1 |
6406
|
aaronmk
|
UNCC,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
2 |
7817
|
aaronmk
|
accession,"/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
3 |
7811
|
aaronmk
|
|
4 |
|
|
[1] Using the following query:
|
5 |
|
|
-----
|
6 |
|
|
SELECT herbarium, accession, count(*)
|
7 |
|
|
FROM ""UNCC"".""Specimen""
|
8 |
|
|
GROUP BY herbarium, accession
|
9 |
|
|
HAVING count(*) > 1
|
10 |
6409
|
aaronmk
|
-----"
|
11 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
12 |
7811
|
aaronmk
|
|
13 |
|
|
[1] Using the following query:
|
14 |
|
|
-----
|
15 |
|
|
SELECT herbarium, accession, count(*)
|
16 |
|
|
FROM ""UNCC"".""Specimen""
|
17 |
|
|
GROUP BY herbarium, accession
|
18 |
|
|
HAVING count(*) > 1
|
19 |
4951
|
aaronmk
|
-----"
|
20 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
21 |
7811
|
aaronmk
|
|
22 |
|
|
[1] Using the following query:
|
23 |
|
|
-----
|
24 |
|
|
SELECT herbarium, accession, count(*)
|
25 |
|
|
FROM ""UNCC"".""Specimen""
|
26 |
|
|
GROUP BY herbarium, accession
|
27 |
|
|
HAVING count(*) > 1
|
28 |
6375
|
aaronmk
|
-----"
|
29 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1]
|
30 |
7811
|
aaronmk
|
|
31 |
|
|
[1] Using the following query:
|
32 |
|
|
-----
|
33 |
|
|
SELECT herbarium, accession, count(*)
|
34 |
|
|
FROM ""UNCC"".""Specimen""
|
35 |
|
|
GROUP BY herbarium, accession
|
36 |
|
|
HAVING count(*) > 1
|
37 |
6313
|
aaronmk
|
-----"
|
38 |
6432
|
aaronmk
|
collectno,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
39 |
7859
|
aaronmk
|
cultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_alt/2/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"
|
40 |
7819
|
aaronmk
|
campus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_alt/2/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"
|
41 |
6432
|
aaronmk
|
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
42 |
|
|
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
43 |
4566
|
aaronmk
|
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
44 |
|
|
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
45 |
|
|
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
46 |
7716
|
aaronmk
|
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
|
47 |
|
|
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2,
|
48 |
|
|
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/3,
|
49 |
|
|
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/4,
|
50 |
|
|
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/6/_label[label=""loaned to""]/value",
|
51 |
|
|
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/7/_label[label=""in or out""]/value",
|
52 |
7195
|
aaronmk
|
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
53 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1]
|
54 |
7811
|
aaronmk
|
|
55 |
|
|
[1] Using the following query:
|
56 |
|
|
-----
|
57 |
|
|
SELECT herbarium, accession, count(*)
|
58 |
|
|
FROM ""UNCC"".""Specimen""
|
59 |
|
|
GROUP BY herbarium, accession
|
60 |
|
|
HAVING count(*) > 1
|
61 |
6375
|
aaronmk
|
-----"
|
62 |
7350
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
63 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
64 |
7811
|
aaronmk
|
|
65 |
|
|
[1] Using the following query:
|
66 |
|
|
-----
|
67 |
|
|
SELECT herbarium, accession, count(*)
|
68 |
|
|
FROM ""UNCC"".""Specimen""
|
69 |
|
|
GROUP BY herbarium, accession
|
70 |
|
|
HAVING count(*) > 1
|
71 |
4951
|
aaronmk
|
-----"
|
72 |
7195
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
73 |
6992
|
aaronmk
|
SciName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
|
74 |
6171
|
aaronmk
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1,
|
75 |
|
|
collector1,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2,
|
76 |
|
|
collector2,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3,
|
77 |
|
|
collector3,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4,
|
78 |
6314
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
79 |
7859
|
aaronmk
|
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"
|
80 |
7819
|
aaronmk
|
campus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"
|
81 |
5657
|
aaronmk
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1",
|
82 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2",
|
83 |
|
|
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
84 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
85 |
|
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
86 |
|
|
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
87 |
|
|
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank/_alt/1,
|
88 |
|
|
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank/_alt/2,
|
89 |
5733
|
aaronmk
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank/_alt/1",
|
90 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank/_alt/2",
|
91 |
7142
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
92 |
|
|
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
|
93 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
94 |
|
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
95 |
|
|
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
96 |
|
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1",
|
97 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2",
|
98 |
|
|
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
99 |
|
|
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
100 |
5657
|
aaronmk
|
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
101 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
102 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
103 |
5783
|
aaronmk
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
104 |
5948
|
aaronmk
|
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
|
105 |
5657
|
aaronmk
|
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/1,
|
106 |
|
|
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/2,
|
107 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Globally unique, although occasionally duplicated. [1]
|
108 |
7811
|
aaronmk
|
|
109 |
|
|
[1] Using the following query:
|
110 |
|
|
-----
|
111 |
|
|
SELECT herbarium, accession, count(*)
|
112 |
|
|
FROM ""UNCC"".""Specimen""
|
113 |
|
|
GROUP BY herbarium, accession
|
114 |
|
|
HAVING count(*) > 1
|
115 |
7350
|
aaronmk
|
-----"
|
116 |
7198
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
117 |
3969
|
aaronmk
|
locality,/location/locationnarrative/_merge/1,
|
118 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
119 |
5855
|
aaronmk
|
country,/location/locationplace/*_id/place/country,
|
120 |
|
|
county,/location/locationplace/*_id/place/county,
|
121 |
6179
|
aaronmk
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
122 |
6294
|
aaronmk
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
123 |
6179
|
aaronmk
|
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
124 |
5855
|
aaronmk
|
state,/location/locationplace/*_id/place/stateprovince,
|
125 |
4979
|
aaronmk
|
filler,,"** No join mapping for *filler ** Where used, same as family"
|
126 |
7812
|
aaronmk
|
flower,,** No join mapping for *flower **
|
127 |
|
|
fruit,,** No join mapping for *fruit **
|
128 |
7816
|
aaronmk
|
herbarium,,"** No join mapping for specimenDonor/_map:[UNCCD=UNCC,*=*]/value ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
|
129 |
7812
|
aaronmk
|
leaves,,** No join mapping for *leaves **
|
130 |
|
|
root,,** No join mapping for *root **
|
131 |
4164
|
aaronmk
|
sheetno,,** No join mapping for associatedMedia ** ?
|