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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 8740 over 11 years Aaron Marcuse-Kubitza bin/repl: skip header instead of parsing it, si...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  inputs 8772 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/MySQL_export: use lib/util.sh inste...
  lib 8767 over 11 years Aaron Marcuse-Kubitza bugfix: lib/common.Makefile: Compression: %.gz ...
  mappings 8235 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Renamed salvias_plots tab...
  planning 8457 over 11 years Aaron Marcuse-Kubitza Moved validation/ under planning/workflow/
  schemas 8769 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb: TNRS taxonomic...
  web 8766 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.2 KB 8627 over 11 years Aaron Marcuse-Kubitza bugfix: root Makefile: $(postgresReload-Linux):...
README.TXT 20.3 KB 8724 over 11 years Aaron Marcuse-Kubitza README.TXT: Maintenance: to synchronize a Mac's...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
8772 05/02/2013 03:48 AM Aaron Marcuse-Kubitza

inputs/GBIF/MySQL_export: use lib/util.sh instead of util.run now that the non-runscript-specific functions have been separated out into it. this ensures that MySQL_export is not unintentionally treated as a runscript (which functions differently from a normal shell script).

8771 05/02/2013 02:46 AM Aaron Marcuse-Kubitza

/.htaccess: use canonical URL without symlinks

8770 05/02/2013 02:44 AM Aaron Marcuse-Kubitza

added /.htaccess to create the right self-referential URL since / is outside the document root (linked from /vegbiendev/fs/)

8769 05/02/2013 02:14 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: TNRS taxonomic scrubbing steps: moved labels to the start of the arrow they label, so that the user can more easily follow the arrows from step to step by looking for an outward-pointing arrow with a label

8768 05/02/2013 01:48 AM Aaron Marcuse-Kubitza

added inputs/GBIF/_MySQL/MySQL.data.sql.gz.md5

8767 05/02/2013 12:46 AM Aaron Marcuse-Kubitza

bugfix: lib/common.Makefile: Compression: %.gz <-> %: only run command if target does not exist, to avoid overwriting the target when the compressed or uncompressed version is newer than it. the difference in mtimes can arise when one file is created after the other, and should not cause the opposite operation to be performed to try to make the other file up-to-date (leading to an infinite back-and-forth of creating one file from the other).

8766 04/30/2013 11:13 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. the VegPath link now includes the new favicon.

8765 04/30/2013 11:12 PM Aaron Marcuse-Kubitza

added web/favicon.ico generated from schemas/BIEN_logo.png

8764 04/30/2013 11:01 PM Aaron Marcuse-Kubitza

web/main.conf: added SSL-protected site for use with password-protected areas of the site, so that the user's password is not transmitted in plaintext. (because the SSL certificate is self-signed, it will unfortunately display the Confirm Security Exception message in Firefox.) note that digest authentication cannot be used to avoid plaintext passwords, because it requires knowing the user's original password to generate the digest, but we have only the MD5 sums in /etc/shadow.

8763 04/30/2013 09:26 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks

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