Project

General

Profile

Statistics
| Revision:

root @ 9496

Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9455 over 11 years Aaron Marcuse-Kubitza bin/map: by_col: ensure verbosity is at least 2...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9493 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql, data.sql: updated for ...
  lib 9482 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: added mk_drop()
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 over 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9493 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql, data.sql: updated for ...
  web 9389 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 22.4 KB 9494 over 11 years Aaron Marcuse-Kubitza README.TXT: Datasource setup: For MySQL inputs:...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9496 05/21/2013 08:26 PM Aaron Marcuse-Kubitza

added backups/*.md5
9495 05/21/2013 08:22 PM Aaron Marcuse-Kubitza

added backups/TNRS.2013-5-21.backup.md5
9494 05/21/2013 07:42 PM Aaron Marcuse-Kubitza

README.TXT: Datasource setup: For MySQL inputs: For .sql exports: added steps to grant privileges to the bien user. the privileges list excludes UPDATE, DELETE, ALTER, DROP to prevent bugs in the import scripts from accidentally deleting data.
9493 05/21/2013 07:37 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql, data.sql: updated for new TNRS CSV columns (see bug at https://pods.iplantcollaborative.org/jira/browse/TNRS-183). note that these columns may eventually change back (comment by Naim at https://pods.iplantcollaborative.org/jira/browse/TNRS-183#comment-34444).
9492 05/21/2013 07:33 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: added steps to check that TNRS ran successfully, and fix errors (due to column changes in the TNRS CSV) if it didn't
9491 05/21/2013 07:24 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: use sh's -e (errexit) mode so errors in an invoked script cause the script to abort instead of burying the error in more output
9490 05/21/2013 07:19 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: documented that `make schemas/"$public"/uninstall` removes the previous results (since it may be confusing why it's prompting the user to uninstall the schema that is an output of the program)
9489 05/21/2013 07:16 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: don't need to run the import twice anymore because the accepted names are now included in the tnrs_input_name view that TNRS runs on
9488 05/21/2013 07:09 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: updated for current TNRS schema
9487 05/21/2013 06:47 PM Aaron Marcuse-Kubitza

bugfix: inputs/test_taxonomic_names/test_scrub: unset $n so it doesn't limit the # rows. it is set to 2 in the default test environment, so must be unset for n-sensitive programs that should be unlimited.

View all revisions | View revisions

Also available in: Atom