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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 about 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9530 about 11 years Aaron Marcuse-Kubitza bin/tnrs_db: documented how to estimate total r...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 about 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9644 about 11 years Aaron Marcuse-Kubitza added inputs/GBIF/raw_occurrence_record/postpro...
  lib 9656 about 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: echo_redirs_cmd(): log each fil...
  mappings 9459 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 about 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9630 about 11 years Aaron Marcuse-Kubitza lib/sh/local.sh: database connection vars: conn...
  web 9614 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 about 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 22.8 KB 9532 about 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 over 11 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 about 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 over 11 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9656 05/30/2013 06:42 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: echo_redirs_cmd(): log each file redir with a separate log() statement, so each line is indented
9655 05/30/2013 06:38 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added echo_redirs_cmd and use it in command() to print cmd
9654 05/30/2013 06:32 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: command(): print <>file redirects before command, because they introduce it
9653 05/30/2013 06:31 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added starts_with()
9652 05/30/2013 05:49 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: to_file(): use @redirs to echo and set >$stdout instead of setting it manually, which is possible now that the command() @redirs bug has been fixed
9651 05/30/2013 05:43 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: convention of fds to use for command-specific alternate stdin/stdout/stderr: changed to 40/41/42 because 10/11/12 are used by eval (which is used by set_fds()). use of fd 10/11/12 will cause hard-to-find silent bugs because exec will not print an error when these are used. documented why not to use other series of fds for this purpose:...
9650 05/30/2013 02:43 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: psql(): use new psql() from db.sh instead of psql_script_vegbien/psql_verbose_vegbien. this requires setting local_pg_database=vegbien to replace vegbien_dest used by psql_*_vegbien.
9649 05/30/2013 02:38 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: psql(): set $PG* connection env vars from our connection vars ($server, $user, etc.). use use_pg to import $database so it can be different from $database for MySQL
9648 05/30/2013 02:31 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: added use_pg alias
9647 05/30/2013 02:31 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/db.sh: psql(): added missing `--set ON_ERROR_STOP=1 --quiet` opts from psql_script_vegbien

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