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Revision 972

Added by Aaron Marcuse-Kubitza almost 13 years ago

inputs/SALVIAS/maps/VegX.organisms.csv: Mapped OrigSpecies and OrigGenus combined to new plantlevel Binomial

View differences:

inputs/SALVIAS/test/VegX.organisms.xml.ref
134 134 
            <Name>Arecaceae</Name>
135 135 
        </taxonConcept>
136 136 
        <taxonConcept id="5">
137 
            <Rank code="sp"/>
138 
            <Name>seleri</Name>
137 
            <Rank code="binom"/>
138 
            <Name>Geonoma seleri</Name>
139 139 
        </taxonConcept>
140 140 
        <taxonConcept id="6">
141 141 
            <Rank code="fam"/>
......
158 158 
            <Name>Clusiaceae</Name>
159 159 
        </taxonConcept>
160 160 
        <taxonConcept id="11">
161 
            <Rank code="sp"/>
162 
            <Name>allenii</Name>
161 
            <Rank code="binom"/>
162 
            <Name>Tovomitopsis allenii</Name>
163 163 
        </taxonConcept>
164 164 
    </taxonConcepts>
165 165 
</VegX>
inputs/SALVIAS/test/VegBIEN.organisms.xml.ref
90 90 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
91 91 
            <plantconcept_id>
92 92 
                <plantconcept>
93 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
94 
                    <plantname_id><plantname><plantname>Arecaceae</plantname></plantname></plantname_id>
93 
                    <plantstatus><plantlevel>Binomial</plantlevel></plantstatus>
94 
                    <plantname_id><plantname><plantname>Geonoma seleri</plantname></plantname></plantname_id>
95 95 
                </plantconcept>
96 96 
            </plantconcept_id>
97 97 
            <determinationtype>Author</determinationtype>
......
102 102 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
103 103 
            <plantconcept_id>
104 104 
                <plantconcept>
105 
                    <plantstatus><plantlevel>Species</plantlevel></plantstatus>
106 
                    <plantname_id><plantname><plantname>seleri</plantname></plantname></plantname_id>
105 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
106 
                    <plantname_id><plantname><plantname>Arecaceae</plantname></plantname></plantname_id>
107 107 
                </plantconcept>
108 108 
            </plantconcept_id>
109 109 
            <determinationtype>Author</determinationtype>
......
205 205 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
206 206 
            <plantconcept_id>
207 207 
                <plantconcept>
208 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
209 
                    <plantname_id><plantname><plantname>Clusiaceae</plantname></plantname></plantname_id>
208 
                    <plantstatus><plantlevel>Binomial</plantlevel></plantstatus>
209 
                    <plantname_id><plantname><plantname>Tovomitopsis allenii</plantname></plantname></plantname_id>
210 210 
                </plantconcept>
211 211 
            </plantconcept_id>
212 212 
            <determinationtype>Author</determinationtype>
......
217 217 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
218 218 
            <plantconcept_id>
219 219 
                <plantconcept>
220 
                    <plantstatus><plantlevel>Species</plantlevel></plantstatus>
221 
                    <plantname_id><plantname><plantname>allenii</plantname></plantname></plantname_id>
220 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
221 
                    <plantname_id><plantname><plantname>Clusiaceae</plantname></plantname></plantname_id>
222 222 
                </plantconcept>
223 223 
            </plantconcept_id>
224 224 
            <determinationtype>Author</determinationtype>
inputs/SALVIAS/maps/VegX.organisms.csv
45 45 
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46 46 
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
47 47 
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
48 
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
48 
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
49 49 
"other_annotations",,
50 50 
"morphocf",,
51 51 
"IsMorpho",,
52 52 
"OrigFamily","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","Brad: OMIT"
53 
"OrigGenus",,
54 
"OrigSpecies","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","Brad: OMIT"
53 
"OrigGenus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/first",
54 
"OrigSpecies","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/last","Brad: OMIT"
55 55 
"OrigAuth",,
56 56 
"phenology",,
57 57 
"canopy_position","/simpleUserdefined[name=canopyPosition]/value","Brad: Should also be userDefined for VegBank. "
inputs/SALVIAS/maps/VegBIEN.organisms.csv
28 28 
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
29 29 
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
30 30 
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
31 
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
32 
OrigGenus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/first",
33 
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
31 34 
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
32 
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/taxonFit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
33 
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
34 35 
PlotObsID,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
35 36 
GenAuth,,
36 37 
IsMorpho,,
37 38 
Line,,
38 39 
OrigAuth,,
39 
OrigGenus,,
40 40 
OrigRecordID,,
41 41 
PlotCode,,"Brad: Same as plotCode, above"
42 42 
SourceVoucher,,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
inputs/SALVIAS-CSV/test/VegX.organisms.xml.ref
174 174 
            <Name>Fabaceae</Name>
175 175 
        </taxonConcept>
176 176 
        <taxonConcept id="4">
177 
            <Rank code="sp"/>
177 
            <Rank code="binom"/>
178 178 
            <Name>Inga indet</Name>
179 179 
        </taxonConcept>
180 180 
        <taxonConcept id="5">
......
194 194 
            <Name>Myristicaceae</Name>
195 195 
        </taxonConcept>
196 196 
        <taxonConcept id="9">
197 
            <Rank code="sp"/>
197 
            <Rank code="binom"/>
198 198 
            <Name>Virola pavonis</Name>
199 199 
        </taxonConcept>
200 200 
    </taxonConcepts>
inputs/SALVIAS-CSV/test/VegBIEN.organisms.xml.ref
94 94 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
95 95 
            <plantconcept_id>
96 96 
                <plantconcept>
97 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
98 
                    <plantname_id><plantname><plantname>Fabaceae</plantname></plantname></plantname_id>
97 
                    <plantstatus><plantlevel>Binomial</plantlevel></plantstatus>
98 
                    <plantname_id><plantname><plantname>Inga indet</plantname></plantname></plantname_id>
99 99 
                </plantconcept>
100 100 
            </plantconcept_id>
101 101 
            <determinationtype>Author</determinationtype>
......
106 106 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
107 107 
            <plantconcept_id>
108 108 
                <plantconcept>
109 
                    <plantstatus><plantlevel>Species</plantlevel></plantstatus>
110 
                    <plantname_id><plantname><plantname>Inga indet</plantname></plantname></plantname_id>
109 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
110 
                    <plantname_id><plantname><plantname>Fabaceae</plantname></plantname></plantname_id>
111 111 
                </plantconcept>
112 112 
            </plantconcept_id>
113 113 
            <determinationtype>Author</determinationtype>
......
209 209 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
210 210 
            <plantconcept_id>
211 211 
                <plantconcept>
212 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
213 
                    <plantname_id><plantname><plantname>Myristicaceae</plantname></plantname></plantname_id>
212 
                    <plantstatus><plantlevel>Binomial</plantlevel></plantstatus>
213 
                    <plantname_id><plantname><plantname>Virola pavonis</plantname></plantname></plantname_id>
214 214 
                </plantconcept>
215 215 
            </plantconcept_id>
216 216 
            <determinationtype>Author</determinationtype>
......
221 221 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
222 222 
            <plantconcept_id>
223 223 
                <plantconcept>
224 
                    <plantstatus><plantlevel>Species</plantlevel></plantstatus>
225 
                    <plantname_id><plantname><plantname>Virola pavonis</plantname></plantname></plantname_id>
224 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
225 
                    <plantname_id><plantname><plantname>Myristicaceae</plantname></plantname></plantname_id>
226 226 
                </plantconcept>
227 227 
            </plantconcept_id>
228 228 
            <determinationtype>Author</determinationtype>
inputs/SALVIAS-CSV/maps/VegX.organisms.csv
26 26 
"specific_authority","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
27 27 
"infra_rank_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank",
28 28 
"infra_ep_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name",
29 
"cf_aff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
29 
"cf_aff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
30 30 
"comments",,"Brad: OMIT"
31 31 
"habit","/simpleUserdefined[name=habit]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
32 32 
"no_of_individuals","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
......
45 45 
"stem_liana_infestation","/simpleUserdefined[name=stemLianaInfestation]/value","Brad: Should also be userDefined for VegBank. "
46 46 
"notes","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text",
47 47 
"orig_family","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","Brad: OMIT"
48 
"orig_species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","Brad: OMIT"
48 
"orig_species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/last","Brad: OMIT"
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv
34 34 
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
35 35 
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
36 36 
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
37 
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
38 
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
37 39 
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
38 
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/taxonFit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
39 
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
40 40 
OBSERVATION_ID,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
41 41 
PLOT_ID,,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
42 42 
collector_code,,Brad: OMIT
mappings/VegX-VegBIEN.organisms.csv
101 101 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first"
102 102 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last"
103 103 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
104 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/fit","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]/taxonFit"
105 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}"
106 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
107 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/first","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/first"
108 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/last","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last"
109 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name/_name/middle","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/middle"
104 110 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
105 111 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
106 112 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
107 113 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
108 114 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
109 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/fit","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/taxonFit"
110 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
111 115 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
112 116 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname"
113 117 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate:[*_id/reference]/sourceaccessioncode}"
mappings/for_review/VegX-VegBIEN.organisms.csv
101 101 
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first"
102 102 
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/last"
103 103 
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname"
104 
//*s/taxonConcept[@code=binom]/fit,"/taxondetermination[rolecode=identifier,plantlevel=Binomial]/taxonFit"
105 
"//*s/taxonConcept[@code=binom]/{fit,Name/_name/middle}","/taxondetermination[rolecode=identifier,plantlevel=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}"
106 
//*s/taxonConcept[@code=binom]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Binomial]/*_id/plantconcept/*_id/*/plantname"
107 
//*s/taxonConcept[@code=binom]/Name/_name/first,"/taxondetermination[rolecode=identifier,plantlevel=Binomial]/*_id/plantconcept/*_id/*/plantname/_name/first"
108 
//*s/taxonConcept[@code=binom]/Name/_name/last,"/taxondetermination[rolecode=identifier,plantlevel=Binomial]/*_id/plantconcept/*_id/*/plantname/_name/last"
109 
//*s/taxonConcept[@code=binom]/Name/_name/middle,"/taxondetermination[rolecode=identifier,plantlevel=Binomial]/*_id/plantconcept/*_id/*/plantname/_name/middle"
104 110 
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname"
105 111 
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname"
106 112 
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname"
107 113 
//*s/taxonConcept[@code=reg]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname"
108 114 
//*s/taxonConcept[@code=ord]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname"
109 
//*s/taxonConcept[@code=sp]/fit,"/taxondetermination[rolecode=identifier,plantlevel=Species]/taxonFit"
110 
//*s/taxonConcept[@code=sp]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname"
111 115 
//*s/taxonConcept[@code=phyl_div]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname"
112 116 
//*s/taxonConcept[@code=ssp]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname"
113 117 
//taxonNameUsageConcept/voucher,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate/sourceaccessioncode}"

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