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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9530 over 11 years Aaron Marcuse-Kubitza bin/tnrs_db: documented how to estimate total r...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9709 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/table.run: table.tsv.md5/make(): on...
  lib 9724 over 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: added $top_dir_abs, $top_dir_orig
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  web 9614 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.3 KB 9703 over 11 years Aaron Marcuse-Kubitza /Makefile: moved %/remake, %-remake to lib/comm...
README.TXT 22.8 KB 9532 over 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9724 06/06/2013 12:03 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: added $top_dir_abs, $top_dir_orig

9723 06/05/2013 11:44 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: command(): use `builtin command` instead of `exec` so that options like -p (reset PATH) work properly. also, the command builtin it overrides is designed to be used with more than just external commands, and command() should not impose additional limitations.

9722 06/05/2013 10:54 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added self_sys alias, which uses only system utilities (`command -p`) instead of the current PATH

9721 06/05/2013 10:37 PM Aaron Marcuse-Kubitza

lib/sh/make.sh: make(): at verbosity < 3, hide messages about making included Makefiles. this makes the make output much more readable when a Makefile contains an include statement, because there won't be a ton of log messages every time a Makefile is included. this filtering is so useful that it probably makes sense to run make for any of our Makefiles using `lib/runscripts/util.run make ...` instead of plain make. compare e.g. `make inputs/ACAD/Specimen/map.csv` (53 lines of output) and `lib/runscripts/util.run make inputs/ACAD/Specimen/map.csv` (17 lines of output, 1/3 as much).

9720 06/05/2013 10:15 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: log++: before cmd: documented that you need to use "log++" instad of log++ to avoid using the log++ alias, which prepends a log_local call. omitting the quotes is generally not a problem, but when there is another command wrapping the log++, you need the "" to avoid the wrapper applying to log_local's declare call instead.

9719 06/05/2013 10:09 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: log++: before cmd: documented how to use it as `log+ #` when incrementing multiple log_levels at once (this is a better method than `"log++" "log++" ...`)

9718 06/05/2013 10:04 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: log++: before cmd: documented that you need to use it as `"log++" "log++"` when repeating it multiple times

9717 06/05/2013 10:02 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added filter_fd(), which encapsulates the use of >() process substitution for filtering an fd other than stdout (yes, this is possible without lots of 3>&1 1>&2 2>&3 redirections!). this can be useful e.g. to filter logging output or highlight errors.

9716 06/05/2013 09:49 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: log+(): documented that with a cmd, assignments are applied just to the cmd, so log_local is not needed

9715 06/05/2013 08:59 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: moved pipe_delay() before fd-related functions so it can be used by them

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