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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9869 over 11 years Aaron Marcuse-Kubitza bugfix: bin/make: use verbosity_compat because ...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  lib 9879 over 11 years Aaron Marcuse-Kubitza bugfix: lib/sh/local.sh: removed make() overrid...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9859 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: added _filter_genus()
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.4 KB 9742 over 11 years Aaron Marcuse-Kubitza /Makefile: new config target (part of install):...
README.TXT 22.8 KB 9532 over 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 390 Bytes 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9882 06/12/2013 10:49 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.

9881 06/12/2013 10:48 AM Aaron Marcuse-Kubitza

bugfix: inputs/VegBIEN/: added _no_import to disable import for this folder, since this is actually just an entry in web/datasources/ with VegPath redirection links, rather than an input to the import process. this fixes "schema "VegBIEN" does not exist" errors generated in `make test`.

9880 06/12/2013 10:45 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: $(dontImport): also support putting a _no_import file at the top level in the datasource to exclude the entire datasource

9879 06/12/2013 10:30 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/local.sh: removed make() override, which is no longer needed now that its operations are performed by verbosity_compat(), and which caused errors by setting $verbosity to the invalid value ""

9878 06/12/2013 10:28 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: verbosity_compat(): always use default verbosity (`unset verbosity`) when verbosity == 1, regardless of whether the caller has set $verbosity to the special value "", because $verbosity is supposed to be an integer field and "" is not supported by most functions that use $verbosity. in cases where a util.sh script is invoked, it will set $verbosity back to the default value 1, so this will function as before for util.sh scripts and fix $verbosity for scripts that use a different verbosity system.

9877 06/12/2013 10:05 AM Aaron Marcuse-Kubitza

added inputs/GBIF/raw_occurrence_record_plants/table.tsv.md5

9876 06/12/2013 09:51 AM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record_plants/test.xml.ref: regenerated. updated for new staging table input columns, which are now the same as the output columns.

9875 06/12/2013 09:41 AM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: %/VegBIEN.csv: use header from map.csv instead of the new columns, so that source.shortname is set to GBIF instead of VegCore

9874 06/12/2013 09:24 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: %/VegBIEN.csv: when a runscript is available, instead map the output columns of map.csv to VegBIEN, because the columns have been renamed in the staging table

9873 06/12/2013 08:32 AM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record_plants/VegBIEN.csv: regenerated, which adds row_num input col

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