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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9869 over 11 years Aaron Marcuse-Kubitza bugfix: bin/make: use verbosity_compat because ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9885 over 11 years Aaron Marcuse-Kubitza added inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-2...
  lib 9889 over 11 years Aaron Marcuse-Kubitza lib/sh/sync.sh: upload(): support passing -- op...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9859 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: added _filter_genus()
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.4 KB 9742 over 11 years Aaron Marcuse-Kubitza /Makefile: new config target (part of install):...
README.TXT 23 KB 9887 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: On local mac...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 390 Bytes 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9889 06/12/2013 12:56 PM Aaron Marcuse-Kubitza

lib/sh/sync.sh: upload(): support passing -- options to put, which will not be run through the path->--include processing
9888 06/12/2013 12:55 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/sync.sh: upload(): added missing `local args=()` initializer
9887 06/12/2013 12:18 PM Aaron Marcuse-Kubitza

/README.TXT: Full database import: On local machine: added step to do steps under Maintenance > "to synchronize vegbiendev, jupiter, and your local machine", which is needed in addition to `make inputs/upload` since that doesn't handle overwrites or deletions
9886 06/12/2013 12:10 PM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: to synchronize vegbiendev, jupiter, and your local machine: added warning that you should pay careful attention to all files that will be deleted or overwritten (as the three machines are often out of sync)
9885 06/12/2013 11:26 AM Aaron Marcuse-Kubitza

added inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.0.preamble.sql
9884 06/12/2013 11:17 AM Aaron Marcuse-Kubitza

/README.TXT: Full database import: make inputs/{upload,download}: run them first with `test=1` to see what the changes will be
9883 06/12/2013 11:12 AM Aaron Marcuse-Kubitza

/README.TXT: Full database import: `svn up`: use --force to avoid errors about existing files
9882 06/12/2013 10:49 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.
9881 06/12/2013 10:48 AM Aaron Marcuse-Kubitza

bugfix: inputs/VegBIEN/: added _no_import to disable import for this folder, since this is actually just an entry in web/datasources/ with VegPath redirection links, rather than an input to the import process. this fixes "schema "VegBIEN" does not exist" errors generated in `make test`.
9880 06/12/2013 10:45 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: $(dontImport): also support putting a _no_import file at the top level in the datasource to exclude the entire datasource

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