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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9897 over 11 years Aaron Marcuse-Kubitza added backups/TNRS.backup.md5, vegbien.r9459.ba...
  bin 9892 over 11 years Aaron Marcuse-Kubitza added bin/sync_upload, a wrapper around sync_up...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9908 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: Name_number: cha...
  lib 9909 over 11 years Aaron Marcuse-Kubitza lib/tnrs.py: retrieval_request_template: turned...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9898 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: allow public_ to view look...
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.4 KB 9742 over 11 years Aaron Marcuse-Kubitza /Makefile: new config target (part of install):...
README.TXT 23.2 KB 9899 over 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: adde...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 390 Bytes 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9909 06/18/2013 05:29 PM Aaron Marcuse-Kubitza

lib/tnrs.py: retrieval_request_template: turned source_sorting back off, because it causes any match from the first source to always be used, even if it has a lower match score than the match from the other source. (Brad confirms that this should be off.) I think we had this on originally to ensure that only Tropicos results were used when available, rather than USDA when it was a better match. * note that due to a bug in the web app, this change will not actually be effective, because the source_sorting option is only applied to the GUI results, not the downloaded TSV. *
9908 06/18/2013 04:27 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: Name_number: changed type to integer so it would sort numerically
9907 06/18/2013 04:24 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added pkey on Time_submitted, Name_number
9906 06/18/2013 04:21 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: changed Name_submitted pkey to a unique constraint to allow adding a pkey on Time_submitted, Name_number instead
9905 06/18/2013 04:14 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: Time_submitted, Name_number: added NOT NULL constraints so that they can be used in a unique constraint
9904 06/18/2013 02:21 PM Aaron Marcuse-Kubitza

lib/tnrs.py: submission_request_template: include GCC in addition to Tropicos, because it provides more synonyms than Tropicos for Asteraceae, and the accepted names still match the Tropicos backbone (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/2013-06-13_conference_call#include-GCC-when-running-TNRS)
9903 06/17/2013 08:18 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/tnrs.make: removed no longer needed end time, now that the total runtime is printed
9902 06/17/2013 08:17 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/tnrs.make: print the total runtime using `time`
9901 06/17/2013 08:14 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/tnrs.make: include the end time in addition to the start time so that the total runtime can be calculated
9900 06/17/2013 07:59 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: command-specific alternate stdin/stdout/stderr: choice of 40/41/42: added mnemonic that 4 looks like A for Alternate

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