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1
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2
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#PBS -S /bin/bash
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3
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#PBS -l select=1:ncpus=16:model=san
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4
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###PBS -l select=4:ncpus=8:model=neh
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5
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##PBS -l select=1:ncpus=12:model=wes
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6
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####### old: select=48:ncpus=8:mpiprocs=8:model=neh
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7
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#PBS -l walltime=2:00:00
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8
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#PBS -j oe
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9
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#PBS -m e
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10
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#PBS -V
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11
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####PBS -W group_list=s1007
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12
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#PBS -q devel
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13
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#PBS -o log/log_^array_index^
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14
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#PBS -o log/log_DataCompile
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15
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#PBS -M adam.wilson@yale.edu
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16
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#PBS -N MOD06
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17
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18
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#source /usr/share/modules/init/bash
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19
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20
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## cd to working directory
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21
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cd /nobackupp1/awilso10/mod06
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22
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23
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## set some memory limits
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24
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# ulimit -d 1500000 -m 1500000 -v 1500000 #limit memory usage
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25
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source /u/awilso10/.bashrc
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26
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source /usr/local/lib/global.profile
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27
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## export a few important variables
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28
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export NCORES=16 # use to limit mclapply() to set nubmer of cores, should be select*ncpus above
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29
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export R_LIBS="/u/awilso10/R/x86_64-unknown-linux-gnu-library/2.15/"
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30
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## load modules
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31
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module load gcc hdf4 udunits R nco mpi-intel #mpi-sgi/mpt.2.06r6
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32
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## Run the script!
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33
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## current version not parallelizing across nodes!
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34
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TMPDIR=$TMPDIR Rscript --verbose --vanilla /u/awilso10/environmental-layers/climate/procedures/MOD06_L2_process.r
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35
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exit 0
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36
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exit 0
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37
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