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# Tracker Status Priority Subject Assignee Updated
962 Task New High walk through loading of datasources from scratch Aaron Marcuse-Kubitza 10/16/2014 09:38 AM Actions
961 Task New High test that staging tables can be reloaded from scratch Aaron Marcuse-Kubitza 10/26/2014 05:16 PM Actions
957 Task Resolved High add mechanism to customize NULL-equivalent strings used by staging table import Aaron Marcuse-Kubitza 10/14/2014 10:16 AM Actions
952 Task New High refresh GBIF so it can be published Aaron Marcuse-Kubitza 09/16/2014 05:12 PM Actions
951 Task Resolved High test that `make install` is able to fully re-create vegbiendev Aaron Marcuse-Kubitza 10/16/2014 09:28 AM Actions
947 Task New Normal have all scripts that replace DB items rename the existing item out of the way rather than dropping it Aaron Marcuse-Kubitza 10/03/2014 03:17 PM Actions
946 Task New Normal update the column names in the VegBIEN example queries to reflect Brian M's renamings Aaron Marcuse-Kubitza 04/28/2017 04:34 AM Actions
940 Task Resolved High resequence datasources in dependency order Aaron Marcuse-Kubitza 07/14/2014 01:25 PM Actions
938 Task New Normal Enquist's taxon validation Aaron Marcuse-Kubitza 06/25/2014 01:19 PM Actions
937 Task New Normal fix missing date fields Aaron Marcuse-Kubitza 10/03/2014 03:18 PM Actions
936 Task New High in TNRS client, detect Internal Server Errors when they occur instead of after the pauses have timed out Aaron Marcuse-Kubitza 06/05/2014 04:42 AM Actions
935 Task Resolved High TNRS crashes when scrubbing names with two infraspecific epithets Aaron Marcuse-Kubitza 06/17/2014 05:25 PM Actions
934 Task New High Data Dictionary Aaron Marcuse-Kubitza 10/03/2014 03:19 PM Actions
932 Task New Normal Discovering BIEN data through iPlant Brian Enquist 05/22/2014 04:43 PM Actions
931 Task New Normal BIEN db at iPlant Martha Narro 05/22/2014 04:32 PM Actions
929 Task New Normal change TNRS client to store metadata Aaron Marcuse-Kubitza 06/26/2014 05:24 PM Actions
928 Task New High switch to new TNRS setup Aaron Marcuse-Kubitza 08/25/2014 05:19 PM Actions
927 Task Resolved Normal move morphospecies name formation to normalized DB Aaron Marcuse-Kubitza 05/27/2014 09:24 PM Actions
917 Task New Normal TNRS: Instructions for new version with TPL Aaron Marcuse-Kubitza 04/28/2017 04:38 AM Actions
916 Task New High Taxon name validation: VegBank Aaron Marcuse-Kubitza 06/19/2014 11:00 AM Actions
915 Task New Normal Taxon Name Validation Aaron Marcuse-Kubitza 04/28/2017 04:21 AM Actions
909 Task New Normal in aggregating validations pipeline, support using input result sets from CSVs instead of only by querying the staging tables Aaron Marcuse-Kubitza 05/03/2014 05:30 PM Actions
908 Task New Normal generate the source-general derived columns directly on the denormalized staging table Aaron Marcuse-Kubitza 04/28/2017 04:39 AM Actions
907 Task Resolved High troubleshoot rsync verification errors Aaron Marcuse-Kubitza 09/10/2014 05:45 PM Actions
905 Task Resolved High narrow down the cause of the import bug (incorrect join columns and disk space leak) Aaron Marcuse-Kubitza 04/28/2017 04:39 AM Actions
904 Task Resolved Normal add MySQL public user to allow accessing the normalized VegCore data dictionary Aaron Marcuse-Kubitza 04/28/2017 04:40 AM Actions
903 Task Resolved High fix Ubuntu 14.04 upgrade bug that prevents Apache from displaying vegbiendev.nceas.ucsb.edu properly Aaron Marcuse-Kubitza 04/28/2017 04:41 AM Actions
902 Task Resolved Normal fix bug that causes joining on the wrong columns in the import Aaron Marcuse-Kubitza 04/28/2017 04:39 AM Actions
901 Task New Normal schedule regular pg_dump backups of the DB Aaron Marcuse-Kubitza 04/23/2014 03:16 PM Actions
899 Task New Normal remove dependencies on Mac Aaron Marcuse-Kubitza 04/16/2014 10:14 PM Actions
898 Task New Immediate remove dependencies on the development machine Aaron Marcuse-Kubitza 11/17/2014 08:47 AM Actions
887 Task Rejected Normal fix disk space leak that fills the disk and crashes the import Aaron Marcuse-Kubitza 04/28/2017 04:39 AM Actions
886 Task New Immediate move test DB to vegbiendev VM Aaron Marcuse-Kubitza 11/17/2014 08:27 AM Actions
884 Task Rejected High fix Postgres bug that causes query planner to use seq scans and slow sorts instead of index scans in the import Aaron Marcuse-Kubitza 04/23/2014 04:00 PM Actions
883 Task Rejected Normal have import scripts regularly check disk space and pause processes if getting close to limit Aaron Marcuse-Kubitza 10/03/2014 03:21 PM Actions
882 Task Rejected High add limit on the # of parallel import processes Aaron Marcuse-Kubitza 04/02/2014 10:10 AM Actions
878 Task New Normal fix crow's foot notation in ERD Aaron Marcuse-Kubitza 04/16/2014 10:16 PM Actions
871 Task New Normal grant bien_read access to validation result tables Aaron Marcuse-Kubitza 02/23/2014 08:03 PM Actions
870 Task New Normal grant bien_read access to publishable staging tables Aaron Marcuse-Kubitza 02/23/2014 08:02 PM Actions
869 Task New Immediate enable schema changes to be made on vegbiendev rather than the development machine Aaron Marcuse-Kubitza 11/17/2014 08:47 AM Actions
859 Task New Normal fix slowness in _taxonlabel_set_parent_id() Aaron Marcuse-Kubitza 01/20/2014 09:14 PM Actions
857 Task New Normal standardize taxon ranks to a common vocabulary Aaron Marcuse-Kubitza 01/16/2014 10:40 AM Actions
856 Task New Normal data provider feedback tables: include the individual records that have errors Aaron Marcuse-Kubitza 01/16/2014 10:42 AM Actions
831 Task New High make tests use their own public schema Aaron Marcuse-Kubitza 07/28/2014 04:50 PM Actions
816 Task New Normal re-run TNRS on mis-scrubbed names Aaron Marcuse-Kubitza 01/09/2014 09:44 AM Actions
815 Task New Normal auto-prepend table name to columns Aaron Marcuse-Kubitza 11/08/2013 10:10 PM Actions
814 Task New High rename columns by name, not position Aaron Marcuse-Kubitza 10/31/2014 03:24 PM Actions
767 Task New High autodetect column mismatches Aaron Marcuse-Kubitza 03/18/2014 03:15 AM Actions
636 Task New Normal support TNRS-matching names in "", insted of encoding them and letting TNRS return no match Aaron Marcuse-Kubitza 04/28/2017 05:13 AM Actions
584 Task Resolved Normal enable running all the import steps from one runscript Aaron Marcuse-Kubitza 03/18/2014 03:07 AM Actions
581 Task New Normal mechanism to dynamically autopopulate NOT NULL values Aaron Marcuse-Kubitza 03/06/2013 10:57 PM Actions
580 Task New Normal automap each word *in* a VegCore term instead of just the whole term Aaron Marcuse-Kubitza 03/06/2013 09:08 PM Actions
579 Task New Normal in sql_gen.EnsureNotNull, use ARRAY[] instead of COALESCE() to wrap values where NULL should be compared literally Aaron Marcuse-Kubitza 03/06/2013 08:45 PM Actions
578 Task New Normal replace all fields of type text with a domain type that ensures the value is non-empty (not '') Aaron Marcuse-Kubitza 03/06/2013 02:08 PM Actions
577 Task Rejected Normal use views instead of map spreadsheets to store the datasource mappings Aaron Marcuse-Kubitza 03/18/2014 03:10 AM Actions
576 Task New Normal merge the datasources' mappings into the VegCore data dictionary Aaron Marcuse-Kubitza 03/05/2013 05:09 AM Actions
575 Task New Normal put all wiki attachments in svn Aaron Marcuse-Kubitza 10/03/2013 12:56 PM Actions
574 Task New Normal mechanism to manually override the CSV dialect, encoding, etc. Aaron Marcuse-Kubitza 02/26/2013 12:48 PM Actions
573 Task New Normal automap the analytical DB columns Aaron Marcuse-Kubitza 03/05/2013 09:41 PM Actions
566 Task New Normal automatically adjust staging tables for easier mapping Aaron Marcuse-Kubitza 02/14/2013 11:04 AM Actions
565 Task Resolved Normal partition the TaxonDetermination table by row into the different types of determinations Aaron Marcuse-Kubitza 04/13/2013 08:56 AM Actions
564 Task New Normal make all VegBIEN column names globally unique Aaron Marcuse-Kubitza 03/09/2013 02:10 AM Actions
563 Task New Normal refactor VegBIEN to use VegCore terms Aaron Marcuse-Kubitza 02/14/2013 06:33 AM Actions
562 Task New Normal flatten the mappings Aaron Marcuse-Kubitza 03/28/2014 03:05 AM Actions
561 Task New Normal make VegBIEN ID fields plain-text instead of numeric Aaron Marcuse-Kubitza 12/03/2013 05:54 AM Actions
560 Task New Normal move VegCore data dictionary to a phpPgAdmin-accessible database Aaron Marcuse-Kubitza 10/03/2013 01:00 PM Actions
549 Task Resolved Normal add covering indexes on fkeys Aaron Marcuse-Kubitza 01/04/2013 09:15 PM Actions
548 Task New Normal remove benign errors from the data provider feedback tables Aaron Marcuse-Kubitza 12/20/2012 02:36 PM Actions
544 Task New Normal integrate creation of analytical DB into automated testing Aaron Marcuse-Kubitza 10/03/2013 01:00 PM Actions
539 Task Rejected Normal get analytical_stem_view to use merge joins instead of hash joins Aaron Marcuse-Kubitza 03/28/2014 02:55 AM Actions
522 Task New Normal fix deadlock when multiple testers are running simultaneously Aaron Marcuse-Kubitza 10/12/2012 01:06 AM Actions
521 Task Resolved Normal make place* tables use a structure similar to taxonconcept Aaron Marcuse-Kubitza 11/08/2012 03:07 AM Actions
501 Task Resolved Normal find out which datasources won't allow their data to be publicly accessible Aaron Marcuse-Kubitza 02/23/2014 07:57 PM Actions
500 Task New Normal when lower rank has name concatenated together, use lowest rank as the scientific name Aaron Marcuse-Kubitza 09/24/2012 01:02 PM Actions
499 Task Resolved Normal map example terms into the taxonomic schema Aaron Marcuse-Kubitza 10/08/2012 07:15 PM Actions
498 Task Resolved Normal add definitions to columns in "green tables" Aaron Marcuse-Kubitza 10/12/2012 05:01 AM Actions
497 Task Resolved Normal create examples of taxonomic names to test the limits of the new taxonomic schema Brad Boyle 10/17/2012 12:02 PM Actions
495 Task Resolved Normal add separate datasource table rather than using party for this Aaron Marcuse-Kubitza 11/08/2012 03:11 AM Actions
494 Task Resolved Normal add indexes for the analytical_db_view joins Aaron Marcuse-Kubitza 09/18/2012 05:14 PM Actions
490 Task New Normal change import.stats.xls to use field rather than row count Aaron Marcuse-Kubitza 09/10/2012 06:55 PM Actions
486 Task New Normal add unit-conversion mechanism Aaron Marcuse-Kubitza 10/08/2012 07:16 PM Actions
485 Task New Normal track data provider's citation requirements in VegBIEN Aaron Marcuse-Kubitza 04/10/2014 03:19 AM Actions
484 Task Resolved Normal support installing staging tables directly from a MySQL export Aaron Marcuse-Kubitza 09/05/2012 08:26 AM Actions
483 Task Resolved Normal rename staging table columns according to map.csv Aaron Marcuse-Kubitza 09/10/2014 03:56 PM Actions
482 Task New Normal translate README.TXT to wiki page Aaron Marcuse-Kubitza 10/03/2013 01:01 PM Actions
480 Task Resolved Normal automate adding a new table to an existing datasource Aaron Marcuse-Kubitza 08/27/2012 05:51 PM Actions
477 Task Rejected Normal allow putting specimens data directly in the top level of the datasource directory Aaron Marcuse-Kubitza 12/06/2012 08:13 PM Actions
476 Task New Normal develop map spreadsheet -> header override file translation utility Aaron Marcuse-Kubitza 09/10/2014 03:58 PM Actions
474 Task Rejected Normal use svn to figure out when a map file has changed and needs to be cleaned up Aaron Marcuse-Kubitza 12/06/2012 08:21 PM Actions
473 Task Resolved Normal use _merge instead of _alt to avoid losing source data on import Aaron Marcuse-Kubitza 08/15/2012 07:49 AM Actions
472 Task Rejected Normal replace accessioncodes with datasource_id+sourceaccessioncode Aaron Marcuse-Kubitza 02/14/2013 07:18 AM Actions
471 Task Resolved Normal add make actions so new dependent maps are rebuilt automatically when their source map changes Aaron Marcuse-Kubitza 08/28/2012 06:30 PM Actions
470 Task Resolved Normal source terms from old versions of DwC to the DwC history page Aaron Marcuse-Kubitza 02/14/2013 07:19 AM Actions
469 Task New Normal give everyone their own account on vegbien Aaron Marcuse-Kubitza 08/27/2012 05:52 PM Actions
468 Task Resolved Normal rename/delete and recreate public schema in one transaction Aaron Marcuse-Kubitza 03/05/2013 05:07 AM Actions
467 Task New Normal underline all to do items in meetings notes Aaron Marcuse-Kubitza 10/03/2013 01:02 PM Actions
466 Task Rejected Normal column-based import: avoid most exceptions by introspecting the DB structure instead of waiting for a parseable exception to be raised Aaron Marcuse-Kubitza 10/03/2013 01:03 PM Actions
465 Task New Normal move issue tracker comments to wiki pages to ensure version history Aaron Marcuse-Kubitza 10/03/2013 01:03 PM Actions
464 Task Resolved Normal reverse XPaths so that they start with location instead of plantobservation or specimenreplicate Aaron Marcuse-Kubitza 08/28/2012 06:31 PM Actions
463 Task Resolved Normal allow an input to appear multiple times in the same map spreadsheet Aaron Marcuse-Kubitza 08/03/2012 06:38 PM Actions
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