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# Status Priority Subject Assignee Updated Due date % Done
368 Rejected Normal get TEAM VegX data 09/17/2012 07:02 AM

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365 Rejected Normal retrieve taxonomic hierarchy in analytical layer by using dynamic queries to external sources 11/08/2012 03:27 AM

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357 Rejected Normal make shortlist of 1st-level fields a method should have 02/10/2012 02:43 PM

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339 New Normal have "schema showdown" 01/24/2012 06:32 PM

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326 Rejected Normal generic MOU template to request data 04/10/2014 03:21 AM

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945 New High incorrect synonym being selected in TNRS 10/17/2014 03:40 PM

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350 Resolved Normal implement methods in VegBIEN 02/21/2012 01:08 PM

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347 Resolved Normal revise milestones 02/03/2012 05:33 PM

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345 Resolved Normal integrate GNRS into VegBIEN 04/10/2014 03:24 AM

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343 Resolved Normal integrate TNRS into VegBIEN 11/08/2012 03:32 AM

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340 Resolved Normal put together definitions of abstract BIEN terms 03/05/2013 05:04 AM

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318 Resolved Normal decide whether to switch to VegX 1.5.2 01/19/2012 11:29 AM

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291 Resolved Normal list of milestones 12/15/2011 01:53 PM

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348 Resolved Normal 1st draft of schema Robert Peet 06/01/2012 03:07 PM 02/29/2012

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931 New Normal BIEN db at iPlant Martha Narro 05/22/2014 04:32 PM

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371 Resolved Normal formalize proposed changes to VegX Mark Schildhauer 06/01/2012 03:05 PM

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327 Resolved Normal look into Clio Mark Schildhauer 09/17/2012 07:09 AM

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344 Resolved Normal contact John about GNRS/georeferencing Jim Regetz 10/03/2013 01:07 PM

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932 New Normal Discovering BIEN data through iPlant Brian Enquist 05/22/2014 04:43 PM

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341 New Normal create verbal descriptions of edge cases Brad Boyle 01/27/2012 03:03 PM

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328 New Normal get raw data rather than flat file exports from RAINFOR Brad Boyle 01/12/2012 04:21 PM

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298 New Normal Try to find source of DwCA (DwC Archives) data Brad Boyle 12/14/2011 02:08 PM

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497 Resolved Normal create examples of taxonomic names to test the limits of the new taxonomic schema Brad Boyle 10/17/2012 12:02 PM

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377 Resolved Normal ask NYBG for direct access to server Brad Boyle 10/03/2013 01:06 PM

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367 Resolved Normal get Univ of Arizona DwC data Brad Boyle 02/28/2012 04:43 PM

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358 Resolved Normal make shortlist of 1st-level fields a method should have Brad Boyle 02/21/2012 01:08 PM

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354 Resolved Normal list of deliverables for next week (2/6-2/10) Brad Boyle 02/04/2012 03:25 PM

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351 Resolved Normal list of fields and method attributes needed to know whether can combine data from different plots Brad Boyle 02/21/2012 01:09 PM

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342 Resolved Normal make DwC_BIEN schema Brad Boyle 02/09/2012 05:28 PM

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334 Resolved Normal which DarwinCore attributes do we want to include in the specimen table? Brad Boyle 01/19/2012 11:30 AM

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322 Resolved Normal get access to raw CTFS data Brad Boyle 01/19/2012 11:31 AM

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307 Resolved Normal Acquire additional specimen data sets in both DwC and DwCA format, esp. GBIF Brad Boyle 10/03/2013 01:09 PM

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306 Resolved Normal Acquire additional plot data sets from providers willing to work with Aaron on mappings and validations Brad Boyle 10/03/2013 01:09 PM

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301 Resolved Normal RAINFOR data Brad Boyle 10/03/2013 01:10 PM

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297 Resolved Normal Request new data dump of specimen data from GBIF, this time in DwC format Brad Boyle 10/03/2013 01:10 PM

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295 Resolved Normal provide benchmark queries for NYBG data Brad Boyle 12/13/2011 12:11 PM

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294 Resolved Normal find plot data source provider to work with Aaron Brad Boyle 10/03/2013 01:10 PM

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966 New Normal figure out why some rows are not getting geoscrubbed Aaron Marcuse-Kubitza 10/25/2014 03:29 PM

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963 New High fix slow loading of pages hosted on vegbiendev Aaron Marcuse-Kubitza 10/16/2014 12:47 PM

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962 New High walk through loading of datasources from scratch Aaron Marcuse-Kubitza 10/16/2014 09:38 AM

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952 New High refresh GBIF so it can be published Aaron Marcuse-Kubitza 09/16/2014 05:12 PM

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949 New Normal fix shortened view_full_occurrence_individual column names that are now ambiguous Aaron Marcuse-Kubitza 10/03/2014 03:22 PM

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946 New Normal update the column names in the VegBIEN example queries to reflect Brian M's renamings Aaron Marcuse-Kubitza 04/28/2017 04:34 AM

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944 New High fix phpPgAdmin bug that crashes the DB when browsing large tables Aaron Marcuse-Kubitza 04/28/2017 04:35 AM

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938 New Normal Enquist's taxon validation Aaron Marcuse-Kubitza 06/25/2014 01:19 PM

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936 New High in TNRS client, detect Internal Server Errors when they occur instead of after the pauses have timed out Aaron Marcuse-Kubitza 06/05/2014 04:42 AM

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929 New Normal change TNRS client to store metadata Aaron Marcuse-Kubitza 06/26/2014 05:24 PM

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915 New Normal Taxon Name Validation Aaron Marcuse-Kubitza 04/28/2017 04:21 AM

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909 New Normal in aggregating validations pipeline, support using input result sets from CSVs instead of only by querying the staging tables Aaron Marcuse-Kubitza 05/03/2014 05:30 PM

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908 New Normal generate the source-general derived columns directly on the denormalized staging table Aaron Marcuse-Kubitza 04/28/2017 04:39 AM

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899 New Normal remove dependencies on Mac Aaron Marcuse-Kubitza 04/16/2014 10:14 PM

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898 New Immediate remove dependencies on the development machine Aaron Marcuse-Kubitza 11/17/2014 08:47 AM

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886 New Immediate move test DB to vegbiendev VM Aaron Marcuse-Kubitza 11/17/2014 08:27 AM

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884 Rejected High fix Postgres bug that causes query planner to use seq scans and slow sorts instead of index scans in the import Aaron Marcuse-Kubitza 04/23/2014 04:00 PM

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883 Rejected Normal have import scripts regularly check disk space and pause processes if getting close to limit Aaron Marcuse-Kubitza 10/03/2014 03:21 PM

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882 Rejected High add limit on the # of parallel import processes Aaron Marcuse-Kubitza 04/02/2014 10:10 AM

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878 New Normal fix crow's foot notation in ERD Aaron Marcuse-Kubitza 04/16/2014 10:16 PM

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871 New Normal grant bien_read access to validation result tables Aaron Marcuse-Kubitza 02/23/2014 08:03 PM

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870 New Normal grant bien_read access to publishable staging tables Aaron Marcuse-Kubitza 02/23/2014 08:02 PM

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869 New Immediate enable schema changes to be made on vegbiendev rather than the development machine Aaron Marcuse-Kubitza 11/17/2014 08:47 AM

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859 New Normal fix slowness in _taxonlabel_set_parent_id() Aaron Marcuse-Kubitza 01/20/2014 09:14 PM

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857 New Normal standardize taxon ranks to a common vocabulary Aaron Marcuse-Kubitza 01/16/2014 10:40 AM

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856 New Normal data provider feedback tables: include the individual records that have errors Aaron Marcuse-Kubitza 01/16/2014 10:42 AM

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831 New High make tests use their own public schema Aaron Marcuse-Kubitza 07/28/2014 04:50 PM

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816 New Normal re-run TNRS on mis-scrubbed names Aaron Marcuse-Kubitza 01/09/2014 09:44 AM

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815 New Normal auto-prepend table name to columns Aaron Marcuse-Kubitza 11/08/2013 10:10 PM

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814 New High rename columns by name, not position Aaron Marcuse-Kubitza 10/31/2014 03:24 PM

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767 New High autodetect column mismatches Aaron Marcuse-Kubitza 03/18/2014 03:15 AM

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636 New Normal support TNRS-matching names in "", insted of encoding them and letting TNRS return no match Aaron Marcuse-Kubitza 04/28/2017 05:13 AM

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581 New Normal mechanism to dynamically autopopulate NOT NULL values Aaron Marcuse-Kubitza 03/06/2013 10:57 PM

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580 New Normal automap each word *in* a VegCore term instead of just the whole term Aaron Marcuse-Kubitza 03/06/2013 09:08 PM

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579 New Normal in sql_gen.EnsureNotNull, use ARRAY[] instead of COALESCE() to wrap values where NULL should be compared literally Aaron Marcuse-Kubitza 03/06/2013 08:45 PM

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578 New Normal replace all fields of type text with a domain type that ensures the value is non-empty (not '') Aaron Marcuse-Kubitza 03/06/2013 02:08 PM

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576 New Normal merge the datasources' mappings into the VegCore data dictionary Aaron Marcuse-Kubitza 03/05/2013 05:09 AM

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574 New Normal mechanism to manually override the CSV dialect, encoding, etc. Aaron Marcuse-Kubitza 02/26/2013 12:48 PM

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573 New Normal automap the analytical DB columns Aaron Marcuse-Kubitza 03/05/2013 09:41 PM

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566 New Normal automatically adjust staging tables for easier mapping Aaron Marcuse-Kubitza 02/14/2013 11:04 AM

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564 New Normal make all VegBIEN column names globally unique Aaron Marcuse-Kubitza 03/09/2013 02:10 AM

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563 New Normal refactor VegBIEN to use VegCore terms Aaron Marcuse-Kubitza 02/14/2013 06:33 AM

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562 New Normal flatten the mappings Aaron Marcuse-Kubitza 03/28/2014 03:05 AM

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561 New Normal make VegBIEN ID fields plain-text instead of numeric Aaron Marcuse-Kubitza 12/03/2013 05:54 AM

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548 New Normal remove benign errors from the data provider feedback tables Aaron Marcuse-Kubitza 12/20/2012 02:36 PM

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539 Rejected Normal get analytical_stem_view to use merge joins instead of hash joins Aaron Marcuse-Kubitza 03/28/2014 02:55 AM

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522 New Normal fix deadlock when multiple testers are running simultaneously Aaron Marcuse-Kubitza 10/12/2012 01:06 AM

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500 New Normal when lower rank has name concatenated together, use lowest rank as the scientific name Aaron Marcuse-Kubitza 09/24/2012 01:02 PM

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490 New Normal change import.stats.xls to use field rather than row count Aaron Marcuse-Kubitza 09/10/2012 06:55 PM

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477 Rejected Normal allow putting specimens data directly in the top level of the datasource directory Aaron Marcuse-Kubitza 12/06/2012 08:13 PM

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476 New Normal develop map spreadsheet -> header override file translation utility Aaron Marcuse-Kubitza 09/10/2014 03:58 PM

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474 Rejected Normal use svn to figure out when a map file has changed and needs to be cleaned up Aaron Marcuse-Kubitza 12/06/2012 08:21 PM

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472 Rejected Normal replace accessioncodes with datasource_id+sourceaccessioncode Aaron Marcuse-Kubitza 02/14/2013 07:18 AM

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469 New Normal give everyone their own account on vegbien Aaron Marcuse-Kubitza 08/27/2012 05:52 PM

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466 Rejected Normal column-based import: avoid most exceptions by introspecting the DB structure instead of waiting for a parseable exception to be raised Aaron Marcuse-Kubitza 10/03/2013 01:03 PM

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461 New Normal don't display warning when nullable boolean columns are handled without using COALESCE() Aaron Marcuse-Kubitza 08/01/2012 06:57 AM

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459 New Normal data provider feedback: propagate srcs (input columns for an intermediate column) for all tables, not just SQL functions? Aaron Marcuse-Kubitza 07/30/2012 07:49 PM

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457 New Normal use driver-native autocommit mode instead of our custom autocommit implementation Aaron Marcuse-Kubitza 07/30/2012 07:19 PM

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456 New Normal test that querying the DB uses the unique indexes instead of a seq scan Aaron Marcuse-Kubitza 07/30/2012 07:07 PM

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453 New Normal cluster vegbien tables periodically Aaron Marcuse-Kubitza 07/30/2012 06:50 PM

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451 New Normal verify database contents as part of automated testing Aaron Marcuse-Kubitza 07/30/2012 06:25 PM

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450 New Normal cast all untyped literals as text using cast_literal() Aaron Marcuse-Kubitza 07/30/2012 04:24 PM

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449 New Normal optimize JOINs on existing rows Aaron Marcuse-Kubitza 07/30/2012 04:15 PM

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