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# Date Author Comment
12407 02/24/2014 08:58 AM Aaron Marcuse-Kubitza

inputs/SALVIAS/validations.sql: added Brad's comments from validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql

12406 02/24/2014 08:53 AM Aaron Marcuse-Kubitza

added inputs/SALVIAS/validations*.sql

12405 02/24/2014 08:50 AM Aaron Marcuse-Kubitza

bugfix: lib/common.Makefile: `svn add`: need to run with --force because the new version of svn in the latest Mac upgrade errors if the file is already under version control

12404 02/24/2014 08:37 AM Aaron Marcuse-Kubitza

fix: validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql: renamed truncated views to match the output queries

12403 02/24/2014 12:30 AM Aaron Marcuse-Kubitza

bugfix: validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql: can't double-JOIN like in MySQL (`JOIN a JOIN b ON a_conds AND b_conds`), so split double-JOIN into two JOINs w/ own ON clauses

12402 02/24/2014 12:28 AM Aaron Marcuse-Kubitza

validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql: removed `LIMIT 10` to match output queries

12401 02/24/2014 12:26 AM Aaron Marcuse-Kubitza

fix: validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql: updated table names to match our renamings

12400 02/24/2014 12:25 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: public_validations.remake_diff_table(): put the type table in the public_validations schema to avoid cluttering up the datasource schema with internal tables

12399 02/24/2014 12:24 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: synced to DB, which changes the sort order (due to system update?)

12398 02/24/2014 12:21 AM Aaron Marcuse-Kubitza

bugfix: validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql: can't double-JOIN like in MySQL (`JOIN a JOIN b ON a_conds AND b_conds`), so split double-JOIN into two JOINs w/ own ON clauses

12397 02/24/2014 12:16 AM Aaron Marcuse-Kubitza

added validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql, modified from bien3_validations_salvias_db_original.sql using the steps at http://wiki.vegpath.org/Aggregating_validations_refactoring

12396 02/23/2014 11:57 PM Aaron Marcuse-Kubitza

fix: /README.TXT: use exact ssh command needed to connect to vegbiendev/jupiter (eg. `ssh -t vegbiendev.nceas.ucsb.edu exec sudo su - aaronmk`) instead of vaguely referring to "on vegbiendev"/"on jupiter"

12395 02/23/2014 11:28 PM Aaron Marcuse-Kubitza

/README.TXT: Full database import: screen: run `unset TMOUT` first because it is most important, now that the remote servers have a TMOUT set for extra security

12394 02/23/2014 08:29 PM Aaron Marcuse-Kubitza

bin/psql_verbose_vegbien: use \\ instead of \ inside '' because this is sh, not bash

12393 02/23/2014 08:26 PM Aaron Marcuse-Kubitza

bin/psql_verbose_vegbien: changed prep-statement order to match lib/sh/db.sh psql()

12392 02/23/2014 08:26 PM Aaron Marcuse-Kubitza

bin/psql_verbose_vegbien: use `\set VERBOSITY terse` to hide stack traces/DETAIL sections of error messages, like in lib/sh/db.sh psql()

12391 02/23/2014 08:11 PM Aaron Marcuse-Kubitza

bin/make_analytical_db: added `public_validations.remake_diff_tables()`

12390 02/23/2014 07:44 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: public_validations.rename_query_view(): fixed usage

12389 02/23/2014 07:43 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added remake_diff_tables() with no args, which remakes all validatable datasources

12388 02/23/2014 07:40 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added validatable_datasources()

12387 02/23/2014 07:36 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added validatable_datasources()

12386 02/23/2014 07:31 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: validation_views(): allow leaving out schema to match all datasources

12385 02/23/2014 07:23 PM Aaron Marcuse-Kubitza

schemas/util.sql: show_views_like(): take a schema regexp like util.show_relations_like(), to allow matching views in all schemas

12384 02/23/2014 07:19 PM Aaron Marcuse-Kubitza

schemas/util.sql: added str_equality_regexp(literal text)

12383 02/23/2014 07:01 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: public_validations.remake_diff_table(): put the type table in the public_validations schema to avoid cluttering up the datasource schema with internal tables

12382 02/23/2014 06:50 PM Aaron Marcuse-Kubitza

schemas/util.sql: util.remake_diff_table(): don't force-re-create type_table. this allows type_table to be shared between multiple diff tables.

12381 02/23/2014 06:00 PM Aaron Marcuse-Kubitza

/README.TXT: to back up the version history: added steps to sync git to the local machine

12380 02/23/2014 05:55 PM Aaron Marcuse-Kubitza

added validation/aggregating/traits/BIEN2_traits/_archive/bien3_validations_traits_complete.sql from Brad's e-mail

12379 02/23/2014 05:32 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: public_validations.remake_diff_table(in_view regclass): document how to regenerate the diff table, in a place that's readily available to someone using the table

12378 02/23/2014 05:08 PM Aaron Marcuse-Kubitza

schemas/util.sql: added curr_func(func text, schema_anchor anyelement)

12377 02/23/2014 03:50 PM Aaron Marcuse-Kubitza

schemas/util.sql: removed unneeded regproc(regprocedure), regprocedure(regproc) because these can actually be directly cast to one another, not just via oid

12376 02/23/2014 03:47 PM Aaron Marcuse-Kubitza

schemas/util.sql: added quote_func_call()

12375 02/23/2014 03:22 PM Aaron Marcuse-Kubitza

schemas/util.sql: added regprocedure(text)

12374 02/23/2014 03:11 PM Aaron Marcuse-Kubitza

schemas/util.sql: func2regproc*(): removed func2* so that this has the format of a cast function (which it is)

12373 02/23/2014 03:10 PM Aaron Marcuse-Kubitza

schemas/util.sql: added func2regproc(regprocedure)

12372 02/23/2014 03:08 PM Aaron Marcuse-Kubitza

schemas/util.sql: added func2regprocedure(regproc)

12371 02/23/2014 02:51 PM Aaron Marcuse-Kubitza

schemas/util.sql: added quote_typed()

12370 02/23/2014 01:30 PM Aaron Marcuse-Kubitza

schemas/util.sql: remake_diff_table(): use util.append_comment() instead of util.set_comment() to allow other functions to add comments to the diff table

12369 02/23/2014 01:18 PM Aaron Marcuse-Kubitza

schemas/util.sql: added append_comment(regclass)

12368 02/23/2014 01:00 PM Aaron Marcuse-Kubitza

schemas/util.sql: added comment(oid)

12367 02/23/2014 12:13 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: _traits_08_taxonname_trait_and_value_for_first_5000_records: renamed to _traits_08_taxonname_trait_and_value because this actually includes all the records, not just the first 5000. this uses the new public_validations.rename_query_view() to rename all associated tables and views, including handling truncated names.

12366 02/23/2014 12:08 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: query_relations(), new_query_view_relation_name(): need to take into account the prefix when determining truncation, using the max_prefix_len param

12365 02/23/2014 12:04 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added query_view_relation_max_prefix_len()

12364 02/23/2014 12:03 PM Aaron Marcuse-Kubitza

fix: schemas/util.sql: drop_relation(text), rename_relation(text, text): appended _esc to params that should be passed in escaped, and _name to those that shouldn't

12363 02/23/2014 12:00 PM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: rename_relation(): need quote_ident() around to_

12362 02/23/2014 11:39 AM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: truncated_prefixed_name_regexp(): need to match the entire string, so that the regexp can be used with util.replace_suffix()

12361 02/23/2014 11:37 AM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: truncated_prefixed_name_regexp(): need to pass max_prefix_len to util.name_was_truncated() because although the name itself might not have been truncated, it might become truncated once prefixed

12360 02/23/2014 11:32 AM Aaron Marcuse-Kubitza

schemas/util.sql: name_was_truncated(): support max_prefix_len param to determine truncation of something that will be prefixed

12359 02/23/2014 11:22 AM Aaron Marcuse-Kubitza

fix: name_was_truncated(): should use util.namedatalen() instead of hardcoding the value

12358 02/22/2014 08:35 PM Aaron Marcuse-Kubitza

schemas/util.sql: replace_suffix(): support strings that have been truncated (eg. as a table name) due to the prepending of a prefix

12357 02/22/2014 08:32 PM Aaron Marcuse-Kubitza

schemas/util.sql: added truncated_prefixed_name_regexp()

12356 02/22/2014 08:12 PM Aaron Marcuse-Kubitza

schemas/util.sql: added rtrim_n()

12355 02/22/2014 07:58 PM Aaron Marcuse-Kubitza

schemas/util.sql: added name_was_truncated()

12354 02/22/2014 07:56 PM Aaron Marcuse-Kubitza

schemas/util.sql: added namedatalen()

12353 02/22/2014 07:21 PM Aaron Marcuse-Kubitza

schemas/util.sql: drop_relation(regclass), rename_relation(regclass): use util.qual_name() instead of ::text so that the schema qualifier is always included in the debug SQL

12352 02/22/2014 07:18 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added rename_query_view(), which renames all DB objects related to a particular validations query

12351 02/22/2014 07:13 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added new_query_view_relation_name()

12350 02/22/2014 07:11 PM Aaron Marcuse-Kubitza

schemas/util.sql: added replace_suffix()

12349 02/22/2014 06:47 PM Aaron Marcuse-Kubitza

schemas/util.sql: added rename_relation(regclass/text, text)

12348 02/22/2014 06:23 PM Aaron Marcuse-Kubitza

fix: schemas/util.sql: drop_relation(): documented that it is actually not idempotent, because the regclass will not be valid after the relation is dropped

12347 02/22/2014 06:21 PM Aaron Marcuse-Kubitza

schemas/util.sql: drop_relation(relation text, type text): put type param first because it is usually constant

12346 02/22/2014 06:12 PM Aaron Marcuse-Kubitza

schemas/util.sql: drop_table(), drop_view(): use drop_relation(relation text, type text)

12345 02/22/2014 06:10 PM Aaron Marcuse-Kubitza

schemas/util.sql: drop_relation(regclass): use simpler drop_relation(relation text, type text)

12344 02/22/2014 06:06 PM Aaron Marcuse-Kubitza

schemas/util.sql: added relation_type(regclass)

12343 02/22/2014 06:04 PM Aaron Marcuse-Kubitza

schemas/util.sql: added drop_relation(relation text, type text)

12342 02/22/2014 06:01 PM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: drop_relation(): need to pass force param to util.drop_*()

12341 02/22/2014 05:50 PM Aaron Marcuse-Kubitza

schemas/util.sql: added relation_type_char(regclass)

12340 02/22/2014 05:50 PM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: relation_type(character): must use "char" type for single character, as character actually allows multiple characters. corrected return type.

12339 02/22/2014 05:47 PM Aaron Marcuse-Kubitza

schemas/util.sql: added relation_type(character)

12338 02/22/2014 04:04 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added rm_query_view(), which removes all DB objects related to a particular validations query

12337 02/22/2014 03:49 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: remake_diff_tables(): need to set function option search_path in order to limit the effects of `SET LOCAL search_path` (mk_set_search_path()) to the current function

12336 02/22/2014 03:48 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: query_views(): renamed to query_relations() because this also returns non-views

12335 02/22/2014 03:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added public_validations.query_views()

12334 02/22/2014 03:35 PM Aaron Marcuse-Kubitza

schemas/util.sql: schema_matches(): should be IMMUTABLE, not STABLE, because it uses only parameter values

12333 02/22/2014 03:24 PM Aaron Marcuse-Kubitza

schemas/util.sql: added regexp_quote()

12332 02/22/2014 03:18 PM Aaron Marcuse-Kubitza

fix: schemas/util.sql: is_table(), is_view(): should be STABLE, not IMMUTABLE, because they reference tables

12331 02/22/2014 02:50 PM Aaron Marcuse-Kubitza

schemas/util.sql: added drop_relation()

12330 02/22/2014 02:41 PM Aaron Marcuse-Kubitza

schemas/util.sql: added is_table()

12329 02/22/2014 02:39 PM Aaron Marcuse-Kubitza

schemas/util.sql: added is_view()

12328 02/22/2014 02:23 PM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: show_views_like(): need to match the schema exactly, not via regexp like util.show_relations_like() does

12327 02/22/2014 02:14 PM Aaron Marcuse-Kubitza

schemas/util.sql: show_views_like(): use util.show_relations_like()

12326 02/22/2014 02:03 PM Aaron Marcuse-Kubitza

schemas/util.sql: show_views_like(): reversed argument order to match show_relations_like()

12325 02/22/2014 12:32 PM Aaron Marcuse-Kubitza

schemas/util.sql: added show_relations_like()

12324 02/22/2014 12:21 PM Aaron Marcuse-Kubitza

schemas/util.sql: added schema_matches()

12323 02/21/2014 10:19 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: remake_diff_tables(): updated runtime now that row limit has been removed (same, 45 min)

12322 02/20/2014 07:18 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: _traits_07_trait_value_and_units, _traits_08_taxonname_trait_and_value_for_first_5000_records: removed LIMIT to match the input queries

12321 02/20/2014 07:12 PM Aaron Marcuse-Kubitza

schemas/util.sql: materialize_query(): ANALYZE the created table so that it has the correct estimated rowcount

12320 02/20/2014 07:08 PM Aaron Marcuse-Kubitza

schemas/util.sql: added analyze_()

12319 02/20/2014 06:49 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: remake_diff_tables(): updated bien2_traits runtime (45 min) to include the now-properly-renamed views 6-8

12318 02/20/2014 06:14 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: remake_diff_tables(): documented runtime for bien2_traits (30 min)

12317 02/20/2014 05:52 PM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: renamed output views to match input views

12316 02/20/2014 04:52 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: _traits_01_count_records (output side): documented runtime (4 min)

12315 02/20/2014 04:33 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: source_by_shortname(): resolved ambiguous column references by renaming PL/pgSQL vars and adding table qualifiers

12314 02/20/2014 04:28 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: source_by_shortname(): changed from STABLE to VOLATILE because the search_path can only be set in VOLATILE functions

12313 02/20/2014 04:19 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: source_by_shortname(): can't be declared STRICT because it now has a 2nd param (schema_anchor) which is always NULL

12312 02/20/2014 08:42 AM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: remake_diff_tables(): can't raise exception at end if had errors, because this would roll back the transaction. instead use new util.raise_error_notice().

12311 02/20/2014 08:41 AM Aaron Marcuse-Kubitza

schemas/util.sql: added raise_error_notice()

12310 02/19/2014 11:59 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: Unix: moved into OS folder. Windows: added steps to try for fixing Windows Update.

12309 02/18/2014 07:16 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added remake_diff_tables()

12308 02/18/2014 05:37 AM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: diff(text, text): also need to include only different rows when comparing single-row tables