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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10031 about 11 years Aaron Marcuse-Kubitza bugfix: backups/.rsync_filter.download: need to...
  bin 10049 about 11 years Aaron Marcuse-Kubitza bugfix: bin/make: do not alter the PATH passed ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 about 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10051 about 11 years Aaron Marcuse-Kubitza inputs/GBIF/run: inherit from lib/runscripts/da...
  lib 10048 about 11 years Aaron Marcuse-Kubitza lib/sh/local.sh: added PATH_add= flag to allow ...
  mappings 9882 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9978 about 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture.pptx: stag...
  schemas 9991 about 11 years Aaron Marcuse-Kubitza schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx....
  web 9997 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.5 KB 9917 about 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23 KB 10040 about 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: synchronization: fixe...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 over 11 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 over 11 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10051 06/26/2013 07:55 AM Aaron Marcuse-Kubitza

inputs/GBIF/run: inherit from lib/runscripts/datasrc_dir.run, which uses import_order.txt to forward calls to the subdirs

10050 06/26/2013 07:54 AM Aaron Marcuse-Kubitza

added blank runscripts inputs/GBIF/Source/run, Specimen/run because they are in import_order.txt (used by lib/runscripts/datasrc_dir.run)

10049 06/26/2013 12:34 AM Aaron Marcuse-Kubitza

bugfix: bin/make: do not alter the PATH passed to the invoked make command, since this is a general-purpose wrapper and is not linked to a specific working copy (it could be used to wrap any make invocation, not just for commands in the svn dir). this uses lib/sh/local.sh's new PATH_add= flag.

10048 06/26/2013 12:30 AM Aaron Marcuse-Kubitza

lib/sh/local.sh: added PATH_add= flag to allow turning off the addition of $bin_dir_abs to the PATH. this is useful for wrapper scripts that should not alter the PATH passed to their invoked command.

10047 06/26/2013 12:28 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/make.sh: make(): invoke only the system make command instead of any wrapper for it in the PATH (by using self_sys instead of self), to prevent infinite recursion. single recursion is resolved by nonrecursive=1, but there are cases where mutual recursion occurs due to the presence of two, different bin/makes in the PATH (e.g. if you have two working copies with bin/make, and one is symlinked in your ~/bin/ folder), and these cases can only be resolved by clearing out the PATH completely (since the bin/makes do not know of each other's existence, in order to remove their parent dirs from the PATH).

10046 06/26/2013 12:23 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: self_sys alias: use new sys_cmd() instead of `command -p` so that only the command path resolution is performed with a limited PATH, and the invoked command itself inherits the full PATH

10045 06/26/2013 12:22 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: added sys_cmd(), which runs a system command and allows running a system command of the same name as the script

10044 06/26/2013 12:20 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: added echo_builtin()

10043 06/25/2013 06:37 PM Aaron Marcuse-Kubitza

inputs/.rsync_ignore: test*.xml: turn on syncing again, but always treat the local side of the sync (starscream or vegbiendev) as the authoritative copy since they are the machines the tests can be run on

10042 06/25/2013 05:18 PM Aaron Marcuse-Kubitza

/.rsync_ignore: temp files: hide them on upload so that they are never synced to jupiter. hiding is different than unidirectionally exclude'ing them, because it also causes them to be deleted on the destination if they were uploaded in previous syncs.

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