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root/trunk @ 12800

Name Size Revision Age Author Comment
  BIEN2 12779 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 12225 almost 11 years Aaron Marcuse-Kubitza _license/non-open-source/applies_to.txt: clarif...
  backups 12176 almost 11 years Aaron Marcuse-Kubitza added backups/vegbien.r12025.backup.md5
  bin 12754 almost 11 years Aaron Marcuse-Kubitza bugfix: bin/repl: only use excluded_prefix_re/e...
  config 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  derived 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  exports 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  inputs 12795 almost 11 years Aaron Marcuse-Kubitza fix: inputs/input.Makefile: removed no longer u...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 12800 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: stderr_matches() wrapper calls: rem...
  mappings 12039 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: verify/%.out: use a *.sq...
  planning 12613 almost 11 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 12789 almost 11 years Aaron Marcuse-Kubitza bugfix: schemas/util.sql: is_constant(util.col_...
  validation 12682 almost 11 years Aaron Marcuse-Kubitza validation/aggregating/plots/bien3_validations_...
  web 12704 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
  wiki 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.4 KB 12548 almost 11 years Aaron Marcuse-Kubitza /Makefile: added separate phppgadmin-Linux targ...
README.TXT 28.5 KB 12752 almost 11 years Aaron Marcuse-Kubitza inputs/run: postprocess(): documented runtime (...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 499 Bytes 12779 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
12800 03/21/2014 03:42 PM Aaron Marcuse-Kubitza

*{.sh,run}: stderr_matches() wrapper calls: removed no longer needed prep_try/rethrow
12799 03/21/2014 03:42 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: stderr_matches(): moved prep_try/rethrow into the function itself so that callers don't have to wrap this function in a complex sequence of prep_try/rethrow statements
12798 03/21/2014 03:25 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added rethrow_exit alias
12797 03/21/2014 03:10 PM Aaron Marcuse-Kubitza

fix: lib/sh/db.sh: pg_table_exists(): use stderr_matches() rather than just the exit status. this also avoids highlighting the benign error.
12796 03/21/2014 03:00 PM Aaron Marcuse-Kubitza

fix: lib/sh/db.sh: pg_table_exists(): use stderr_matches() rather than just the exit status. this also avoids highlighting the benign error.
12795 03/21/2014 02:16 AM Aaron Marcuse-Kubitza

fix: inputs/input.Makefile: removed no longer used special handling of XML inputs, support for which was never added to the Makefile. (bin/map, however, does support importing an XML file into a database.) this fixes a bug in XAL, which used to abort with an error but now just imports an empty table.
12794 03/21/2014 12:34 AM Aaron Marcuse-Kubitza

fix: inputs/input.Makefile: %/install: don't ignore errors if table does not exist, to ensure a proper errexit. this is now possible because every dir that this target is being run on should be a data dir. (Source/ used to be a metadata-only dir.)
12793 03/21/2014 12:31 AM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: $(cleanup): need `set -o pipefail`
12792 03/21/2014 12:02 AM Aaron Marcuse-Kubitza

inputs/VegBank/run: `rm=1 import()`: updated runtime (1 h)
12791 03/20/2014 11:54 PM Aaron Marcuse-Kubitza

inputs/VegBank/taxon_observation.**/test.xml.ref: updated inserted row count

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