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# Database access
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2 |
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3 |
1869
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import copy
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4 |
2127
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import operator
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5 |
11
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import re
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6 |
865
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import warnings
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7 |
11
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8 |
300
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import exc
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9 |
1909
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import dicts
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1893
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import iters
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11 |
1960
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import lists
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12 |
1889
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from Proxy import Proxy
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13 |
1872
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import rand
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14 |
862
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import strings
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131
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import util
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16 |
11
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832
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##### Exceptions
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18 |
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135
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def get_cur_query(cur):
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20 |
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if hasattr(cur, 'query'): return cur.query
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21 |
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elif hasattr(cur, '_last_executed'): return cur._last_executed
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22 |
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else: return None
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23 |
14
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aaronmk
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300
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def _add_cursor_info(e, cur): exc.add_msg(e, 'query: '+get_cur_query(cur))
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135
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300
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class DbException(exc.ExceptionWithCause):
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14
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def __init__(self, msg, cause=None, cur=None):
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28 |
2145
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exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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29 |
14
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if cur != None: _add_cursor_info(self, cur)
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30 |
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31 |
2143
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class ExceptionWithName(DbException):
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32 |
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def __init__(self, name, cause=None):
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33 |
2145
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DbException.__init__(self, 'for name: '+str(name), cause)
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34 |
2143
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self.name = name
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35 |
360
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36 |
468
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class ExceptionWithColumns(DbException):
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37 |
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def __init__(self, cols, cause=None):
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38 |
2145
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DbException.__init__(self, 'for columns: '+(', '.join(cols)), cause)
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39 |
468
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self.cols = cols
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40 |
11
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2143
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class NameException(DbException): pass
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42 |
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43 |
468
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class DuplicateKeyException(ExceptionWithColumns): pass
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44 |
13
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45 |
468
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class NullValueException(ExceptionWithColumns): pass
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46 |
13
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2143
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class DuplicateTableException(ExceptionWithName): pass
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48 |
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89
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class EmptyRowException(DbException): pass
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50 |
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865
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##### Warnings
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class DbWarning(UserWarning): pass
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54 |
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1930
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aaronmk
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##### Result retrieval
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def col_names(cur): return (col[0] for col in cur.description)
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58 |
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def rows(cur): return iter(lambda: cur.fetchone(), None)
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def consume_rows(cur):
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'''Used to fetch all rows so result will be cached'''
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iters.consume_iter(rows(cur))
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def next_row(cur): return rows(cur).next()
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def row(cur):
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row_ = next_row(cur)
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consume_rows(cur)
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return row_
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def next_value(cur): return next_row(cur)[0]
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def value(cur): return row(cur)[0]
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def values(cur): return iters.func_iter(lambda: next_value(cur))
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def value_or_none(cur):
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try: return value(cur)
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except StopIteration: return None
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2101
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name)
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def check_name(name):
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if re.search(r'\W', name) != None: raise NameException('Name "'+name
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+'" may contain only alphanumeric characters and _')
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89 |
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def esc_name_by_module(module, name, ignore_case=False):
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if module == 'psycopg2':
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if ignore_case:
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# Don't enclose in quotes because this disables case-insensitivity
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check_name(name)
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return name
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else: quote = '"'
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elif module == 'MySQLdb': quote = '`'
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else: raise NotImplementedError("Can't escape name for "+module+' database')
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return quote + name.replace(quote, '') + quote
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def esc_name_by_engine(engine, name, **kw_args):
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return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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def esc_name(db, name, **kw_args):
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return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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def qual_name(db, schema, table):
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def esc_name_(name): return esc_name(db, name)
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table = esc_name_(table)
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if schema != None: return esc_name_(schema)+'.'+table
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else: return table
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1869
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aaronmk
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##### Database connections
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114 |
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aaronmk
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2097
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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116 |
1926
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117 |
1869
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db_engines = {
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'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
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'PostgreSQL': ('psycopg2', {}),
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}
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DatabaseErrors_set = set([DbException])
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DatabaseErrors = tuple(DatabaseErrors_set)
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124 |
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125 |
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def _add_module(module):
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DatabaseErrors_set.add(module.DatabaseError)
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127 |
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global DatabaseErrors
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128 |
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DatabaseErrors = tuple(DatabaseErrors_set)
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129 |
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130 |
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def db_config_str(db_config):
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131 |
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return db_config['engine']+' database '+db_config['database']
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132 |
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133 |
1909
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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134 |
1894
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aaronmk
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135 |
1901
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aaronmk
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log_debug_none = lambda msg: None
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136 |
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137 |
1849
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aaronmk
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class DbConn:
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138 |
2047
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aaronmk
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def __init__(self, db_config, serializable=True, log_debug=log_debug_none,
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139 |
2050
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caching=True):
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140 |
1869
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self.db_config = db_config
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141 |
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self.serializable = serializable
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142 |
1901
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aaronmk
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self.log_debug = log_debug
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143 |
2047
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aaronmk
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self.caching = caching
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144 |
1869
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aaronmk
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145 |
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self.__db = None
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146 |
1889
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self.query_results = {}
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147 |
2139
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self._savepoint = 0
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148 |
1869
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aaronmk
|
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149 |
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def __getattr__(self, name):
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150 |
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if name == '__dict__': raise Exception('getting __dict__')
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151 |
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if name == 'db': return self._db()
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else: raise AttributeError()
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153 |
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154 |
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def __getstate__(self):
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155 |
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state = copy.copy(self.__dict__) # shallow copy
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156 |
1915
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aaronmk
|
state['log_debug'] = None # don't pickle the debug callback
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157 |
1869
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aaronmk
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state['_DbConn__db'] = None # don't pickle the connection
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158 |
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return state
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159 |
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160 |
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def _db(self):
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161 |
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if self.__db == None:
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162 |
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# Process db_config
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163 |
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db_config = self.db_config.copy() # don't modify input!
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164 |
2097
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aaronmk
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schemas = db_config.pop('schemas', None)
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165 |
1869
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aaronmk
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module_name, mappings = db_engines[db_config.pop('engine')]
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166 |
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module = __import__(module_name)
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167 |
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_add_module(module)
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168 |
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for orig, new in mappings.iteritems():
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169 |
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try: util.rename_key(db_config, orig, new)
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170 |
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except KeyError: pass
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171 |
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172 |
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# Connect
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173 |
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self.__db = module.connect(**db_config)
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174 |
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175 |
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# Configure connection
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176 |
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if self.serializable: run_raw_query(self,
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177 |
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'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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178 |
2101
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aaronmk
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if schemas != None:
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179 |
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schemas_ = ''.join((esc_name(self, s)+', '
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180 |
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for s in schemas.split(',')))
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181 |
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run_raw_query(self, "SELECT set_config('search_path', \
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182 |
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%s || current_setting('search_path'), false)", [schemas_])
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183 |
1869
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aaronmk
|
|
184 |
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return self.__db
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185 |
1889
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aaronmk
|
|
186 |
1891
|
aaronmk
|
class DbCursor(Proxy):
|
187 |
1927
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aaronmk
|
def __init__(self, outer):
|
188 |
1891
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aaronmk
|
Proxy.__init__(self, outer.db.cursor())
|
189 |
1927
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aaronmk
|
self.query_results = outer.query_results
|
190 |
1894
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aaronmk
|
self.query_lookup = None
|
191 |
1891
|
aaronmk
|
self.result = []
|
192 |
1889
|
aaronmk
|
|
193 |
1894
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aaronmk
|
def execute(self, query, params=None):
|
194 |
1930
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aaronmk
|
self._is_insert = query.upper().find('INSERT') >= 0
|
195 |
1894
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aaronmk
|
self.query_lookup = _query_lookup(query, params)
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196 |
2148
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aaronmk
|
try:
|
197 |
|
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try: return_value = self.inner.execute(query, params)
|
198 |
|
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finally: self.query = get_cur_query(self.inner)
|
199 |
1904
|
aaronmk
|
except Exception, e:
|
200 |
2148
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aaronmk
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_add_cursor_info(e, self)
|
201 |
1904
|
aaronmk
|
self.result = e # cache the exception as the result
|
202 |
|
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self._cache_result()
|
203 |
|
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raise
|
204 |
1930
|
aaronmk
|
# Fetch all rows so result will be cached
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205 |
|
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if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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206 |
1894
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aaronmk
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return return_value
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207 |
|
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|
208 |
1891
|
aaronmk
|
def fetchone(self):
|
209 |
|
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row = self.inner.fetchone()
|
210 |
1899
|
aaronmk
|
if row != None: self.result.append(row)
|
211 |
|
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# otherwise, fetched all rows
|
212 |
1904
|
aaronmk
|
else: self._cache_result()
|
213 |
|
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return row
|
214 |
|
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|
215 |
|
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def _cache_result(self):
|
216 |
1906
|
aaronmk
|
# For inserts, only cache exceptions since inserts are not
|
217 |
|
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# idempotent, but an invalid insert will always be invalid
|
218 |
1930
|
aaronmk
|
if self.query_results != None and (not self._is_insert
|
219 |
1906
|
aaronmk
|
or isinstance(self.result, Exception)):
|
220 |
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|
221 |
1894
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aaronmk
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assert self.query_lookup != None
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222 |
1916
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aaronmk
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self.query_results[self.query_lookup] = self.CacheCursor(
|
223 |
|
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util.dict_subset(dicts.AttrsDictView(self),
|
224 |
|
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['query', 'result', 'rowcount', 'description']))
|
225 |
1906
|
aaronmk
|
|
226 |
1916
|
aaronmk
|
class CacheCursor:
|
227 |
|
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def __init__(self, cached_result): self.__dict__ = cached_result
|
228 |
|
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|
229 |
1927
|
aaronmk
|
def execute(self, *args, **kw_args):
|
230 |
1916
|
aaronmk
|
if isinstance(self.result, Exception): raise self.result
|
231 |
|
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# otherwise, result is a rows list
|
232 |
|
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self.iter = iter(self.result)
|
233 |
|
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|
234 |
|
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def fetchone(self):
|
235 |
|
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try: return self.iter.next()
|
236 |
|
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except StopIteration: return None
|
237 |
1891
|
aaronmk
|
|
238 |
1894
|
aaronmk
|
def run_query(self, query, params=None, cacheable=False):
|
239 |
2148
|
aaronmk
|
'''Translates known DB errors to typed exceptions:
|
240 |
|
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See self.DbCursor.execute().'''
|
241 |
2047
|
aaronmk
|
if not self.caching: cacheable = False
|
242 |
1903
|
aaronmk
|
used_cache = False
|
243 |
|
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try:
|
244 |
1927
|
aaronmk
|
# Get cursor
|
245 |
|
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if cacheable:
|
246 |
|
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query_lookup = _query_lookup(query, params)
|
247 |
|
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try:
|
248 |
|
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cur = self.query_results[query_lookup]
|
249 |
|
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used_cache = True
|
250 |
|
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except KeyError: cur = self.DbCursor(self)
|
251 |
|
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else: cur = self.db.cursor()
|
252 |
|
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|
253 |
|
|
# Run query
|
254 |
2148
|
aaronmk
|
cur.execute(query, params)
|
255 |
1903
|
aaronmk
|
finally:
|
256 |
|
|
if self.log_debug != log_debug_none: # only compute msg if needed
|
257 |
|
|
if used_cache: cache_status = 'Cache hit'
|
258 |
|
|
elif cacheable: cache_status = 'Cache miss'
|
259 |
|
|
else: cache_status = 'Non-cacheable'
|
260 |
1927
|
aaronmk
|
self.log_debug(cache_status+': '
|
261 |
|
|
+strings.one_line(get_cur_query(cur)))
|
262 |
1903
|
aaronmk
|
|
263 |
|
|
return cur
|
264 |
1914
|
aaronmk
|
|
265 |
|
|
def is_cached(self, query, params=None):
|
266 |
|
|
return _query_lookup(query, params) in self.query_results
|
267 |
2139
|
aaronmk
|
|
268 |
|
|
def with_savepoint(self, func):
|
269 |
|
|
savepoint = 'savepoint_'+str(self._savepoint)
|
270 |
|
|
self.run_query('SAVEPOINT '+savepoint)
|
271 |
|
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self._savepoint += 1
|
272 |
|
|
try:
|
273 |
|
|
try: return_val = func()
|
274 |
|
|
finally:
|
275 |
|
|
self._savepoint -= 1
|
276 |
|
|
assert self._savepoint >= 0
|
277 |
|
|
except:
|
278 |
|
|
self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
|
279 |
|
|
raise
|
280 |
|
|
else:
|
281 |
|
|
self.run_query('RELEASE SAVEPOINT '+savepoint)
|
282 |
|
|
return return_val
|
283 |
1849
|
aaronmk
|
|
284 |
1869
|
aaronmk
|
connect = DbConn
|
285 |
|
|
|
286 |
832
|
aaronmk
|
##### Querying
|
287 |
|
|
|
288 |
1894
|
aaronmk
|
def run_raw_query(db, *args, **kw_args):
|
289 |
2085
|
aaronmk
|
'''For params, see DbConn.run_query()'''
|
290 |
1894
|
aaronmk
|
return db.run_query(*args, **kw_args)
|
291 |
11
|
aaronmk
|
|
292 |
2068
|
aaronmk
|
def mogrify(db, query, params):
|
293 |
|
|
module = util.root_module(db.db)
|
294 |
|
|
if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
|
295 |
|
|
else: raise NotImplementedError("Can't mogrify query for "+module+
|
296 |
|
|
' database')
|
297 |
|
|
|
298 |
832
|
aaronmk
|
##### Recoverable querying
|
299 |
15
|
aaronmk
|
|
300 |
2139
|
aaronmk
|
def with_savepoint(db, func): return db.with_savepoint(func)
|
301 |
11
|
aaronmk
|
|
302 |
1894
|
aaronmk
|
def run_query(db, query, params=None, recover=None, cacheable=False):
|
303 |
830
|
aaronmk
|
if recover == None: recover = False
|
304 |
|
|
|
305 |
2148
|
aaronmk
|
try:
|
306 |
|
|
def run(): return run_raw_query(db, query, params, cacheable)
|
307 |
|
|
if recover and not db.is_cached(query, params):
|
308 |
|
|
return with_savepoint(db, run)
|
309 |
|
|
else: return run() # don't need savepoint if cached
|
310 |
|
|
except Exception, e:
|
311 |
|
|
if not recover: raise # need savepoint to run index_cols()
|
312 |
|
|
msg = str(e)
|
313 |
|
|
match = re.search(r'duplicate key value violates unique constraint '
|
314 |
|
|
r'"((_?[^\W_]+)_[^"]+)"', msg)
|
315 |
|
|
if match:
|
316 |
|
|
constraint, table = match.groups()
|
317 |
|
|
try: cols = index_cols(db, table, constraint)
|
318 |
|
|
except NotImplementedError: raise e
|
319 |
|
|
else: raise DuplicateKeyException(cols, e)
|
320 |
|
|
match = re.search(r'null value in column "(\w+)" violates not-null '
|
321 |
|
|
'constraint', msg)
|
322 |
|
|
if match: raise NullValueException([match.group(1)], e)
|
323 |
|
|
match = re.search(r'relation "(\w+)" already exists', msg)
|
324 |
|
|
if match: raise DuplicateTableException(match.group(1), e)
|
325 |
|
|
raise # no specific exception raised
|
326 |
830
|
aaronmk
|
|
327 |
832
|
aaronmk
|
##### Basic queries
|
328 |
|
|
|
329 |
2085
|
aaronmk
|
def run_query_into(db, query, params, into=None, *args, **kw_args):
|
330 |
|
|
'''Outputs a query to a temp table.
|
331 |
|
|
For params, see run_query().
|
332 |
|
|
'''
|
333 |
|
|
if into == None: return run_query(db, query, params, *args, **kw_args)
|
334 |
|
|
else: # place rows in temp table
|
335 |
|
|
check_name(into)
|
336 |
|
|
return run_query(db, 'CREATE TEMP TABLE '+into+' AS '+query, params,
|
337 |
|
|
*args, **kw_args) # CREATE TABLE sets rowcount to # rows in query
|
338 |
|
|
|
339 |
2120
|
aaronmk
|
order_by_pkey = object() # tells mk_select() to order by the pkey
|
340 |
|
|
|
341 |
2127
|
aaronmk
|
join_using = object() # tells mk_select() to join the column with USING
|
342 |
|
|
|
343 |
2121
|
aaronmk
|
def mk_select(db, tables, fields=None, conds=None, limit=None, start=None,
|
344 |
2120
|
aaronmk
|
order_by=order_by_pkey, table_is_esc=False):
|
345 |
1981
|
aaronmk
|
'''
|
346 |
2121
|
aaronmk
|
@param tables The single table to select from, or a list of tables to join
|
347 |
2124
|
aaronmk
|
together: [table0, (table1, dict(right_col=left_col, ...)), ...]
|
348 |
1981
|
aaronmk
|
@param fields Use None to select all fields in the table
|
349 |
|
|
@param table_is_esc Whether the table name has already been escaped
|
350 |
2054
|
aaronmk
|
@return tuple(query, params)
|
351 |
1981
|
aaronmk
|
'''
|
352 |
2060
|
aaronmk
|
def esc_name_(name): return esc_name(db, name)
|
353 |
2058
|
aaronmk
|
|
354 |
2121
|
aaronmk
|
if not lists.is_seq(tables): tables = [tables]
|
355 |
2141
|
aaronmk
|
tables = list(tables) # don't modify input! (list() copies input)
|
356 |
2121
|
aaronmk
|
table0 = tables.pop(0) # first table is separate
|
357 |
|
|
|
358 |
1135
|
aaronmk
|
if conds == None: conds = {}
|
359 |
135
|
aaronmk
|
assert limit == None or type(limit) == int
|
360 |
865
|
aaronmk
|
assert start == None or type(start) == int
|
361 |
2120
|
aaronmk
|
if order_by == order_by_pkey:
|
362 |
2121
|
aaronmk
|
order_by = pkey(db, table0, recover=True, table_is_esc=table_is_esc)
|
363 |
|
|
if not table_is_esc: table0 = esc_name_(table0)
|
364 |
865
|
aaronmk
|
|
365 |
2056
|
aaronmk
|
params = []
|
366 |
|
|
|
367 |
|
|
def parse_col(field):
|
368 |
|
|
'''Parses fields'''
|
369 |
2121
|
aaronmk
|
if isinstance(field, tuple): # field is literal value
|
370 |
2056
|
aaronmk
|
value, col = field
|
371 |
|
|
sql_ = '%s'
|
372 |
|
|
params.append(value)
|
373 |
2058
|
aaronmk
|
if col != None: sql_ += ' AS '+esc_name_(col)
|
374 |
|
|
else: sql_ = esc_name_(field) # field is col name
|
375 |
2056
|
aaronmk
|
return sql_
|
376 |
11
|
aaronmk
|
def cond(entry):
|
377 |
2056
|
aaronmk
|
'''Parses conditions'''
|
378 |
13
|
aaronmk
|
col, value = entry
|
379 |
2058
|
aaronmk
|
cond_ = esc_name_(col)+' '
|
380 |
11
|
aaronmk
|
if value == None: cond_ += 'IS'
|
381 |
|
|
else: cond_ += '='
|
382 |
|
|
cond_ += ' %s'
|
383 |
|
|
return cond_
|
384 |
2056
|
aaronmk
|
|
385 |
1135
|
aaronmk
|
query = 'SELECT '
|
386 |
|
|
if fields == None: query += '*'
|
387 |
2056
|
aaronmk
|
else: query += ', '.join(map(parse_col, fields))
|
388 |
2121
|
aaronmk
|
query += ' FROM '+table0
|
389 |
865
|
aaronmk
|
|
390 |
2122
|
aaronmk
|
# Add joins
|
391 |
|
|
left_table = table0
|
392 |
|
|
for table, joins in tables:
|
393 |
|
|
if not table_is_esc: table = esc_name_(table)
|
394 |
2127
|
aaronmk
|
query += ' JOIN '+table
|
395 |
2122
|
aaronmk
|
|
396 |
|
|
def join(entry):
|
397 |
2127
|
aaronmk
|
'''Parses non-USING joins'''
|
398 |
2124
|
aaronmk
|
right_col, left_col = entry
|
399 |
|
|
right_col = table+'.'+esc_name_(right_col)
|
400 |
2122
|
aaronmk
|
left_col = left_table+'.'+esc_name_(left_col)
|
401 |
2123
|
aaronmk
|
return (right_col+' = '+left_col
|
402 |
|
|
+' OR ('+right_col+' IS NULL AND '+left_col+' IS NULL)')
|
403 |
2122
|
aaronmk
|
|
404 |
2127
|
aaronmk
|
if reduce(operator.and_, (v == join_using for v in joins.itervalues())):
|
405 |
|
|
# all cols w/ USING
|
406 |
2130
|
aaronmk
|
query += ' USING ('+(', '.join(joins.iterkeys()))+')'
|
407 |
2127
|
aaronmk
|
else: query += ' ON '+(' AND '.join(map(join, joins.iteritems())))
|
408 |
|
|
|
409 |
2122
|
aaronmk
|
left_table = table
|
410 |
|
|
|
411 |
865
|
aaronmk
|
missing = True
|
412 |
89
|
aaronmk
|
if conds != {}:
|
413 |
2122
|
aaronmk
|
query += ' WHERE '+(' AND '.join(map(cond, conds.iteritems())))
|
414 |
2056
|
aaronmk
|
params += conds.values()
|
415 |
865
|
aaronmk
|
missing = False
|
416 |
2120
|
aaronmk
|
if order_by != None: query += ' ORDER BY '+esc_name_(order_by)
|
417 |
865
|
aaronmk
|
if limit != None: query += ' LIMIT '+str(limit); missing = False
|
418 |
|
|
if start != None:
|
419 |
|
|
if start != 0: query += ' OFFSET '+str(start)
|
420 |
|
|
missing = False
|
421 |
|
|
if missing: warnings.warn(DbWarning(
|
422 |
|
|
'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
|
423 |
|
|
|
424 |
2056
|
aaronmk
|
return (query, params)
|
425 |
11
|
aaronmk
|
|
426 |
2054
|
aaronmk
|
def select(db, *args, **kw_args):
|
427 |
|
|
'''For params, see mk_select() and run_query()'''
|
428 |
|
|
recover = kw_args.pop('recover', None)
|
429 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
430 |
|
|
|
431 |
|
|
query, params = mk_select(db, *args, **kw_args)
|
432 |
|
|
return run_query(db, query, params, recover, cacheable)
|
433 |
|
|
|
434 |
2066
|
aaronmk
|
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
|
435 |
2070
|
aaronmk
|
returning=None, embeddable=False, table_is_esc=False):
|
436 |
1960
|
aaronmk
|
'''
|
437 |
|
|
@param returning str|None An inserted column (such as pkey) to return
|
438 |
2070
|
aaronmk
|
@param embeddable Whether the query should be embeddable as a nested SELECT.
|
439 |
2073
|
aaronmk
|
Warning: If you set this and cacheable=True when the query is run, the
|
440 |
|
|
query will be fully cached, not just if it raises an exception.
|
441 |
1960
|
aaronmk
|
@param table_is_esc Whether the table name has already been escaped
|
442 |
|
|
'''
|
443 |
2063
|
aaronmk
|
if select_query == None: select_query = 'DEFAULT VALUES'
|
444 |
|
|
if cols == []: cols = None # no cols (all defaults) = unknown col names
|
445 |
1960
|
aaronmk
|
if not table_is_esc: check_name(table)
|
446 |
2063
|
aaronmk
|
|
447 |
|
|
# Build query
|
448 |
|
|
query = 'INSERT INTO '+table
|
449 |
|
|
if cols != None:
|
450 |
|
|
map(check_name, cols)
|
451 |
|
|
query += ' ('+', '.join(cols)+')'
|
452 |
|
|
query += ' '+select_query
|
453 |
|
|
|
454 |
|
|
if returning != None:
|
455 |
|
|
check_name(returning)
|
456 |
|
|
query += ' RETURNING '+returning
|
457 |
|
|
|
458 |
2070
|
aaronmk
|
if embeddable:
|
459 |
|
|
# Create function
|
460 |
2083
|
aaronmk
|
function = 'pg_temp.'+('_'.join(map(clean_name,
|
461 |
|
|
['insert', table] + cols)))
|
462 |
2070
|
aaronmk
|
return_type = 'SETOF '+table+'.'+returning+'%TYPE'
|
463 |
|
|
function_query = '''\
|
464 |
2083
|
aaronmk
|
CREATE OR REPLACE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
|
465 |
2070
|
aaronmk
|
LANGUAGE sql
|
466 |
|
|
AS $$'''+mogrify(db, query, params)+''';$$;
|
467 |
|
|
'''
|
468 |
|
|
run_query(db, function_query, cacheable=True)
|
469 |
|
|
|
470 |
|
|
# Return query that uses function
|
471 |
2134
|
aaronmk
|
return mk_select(db, function+'() AS f ('+returning+')', start=0,
|
472 |
|
|
order_by=None, table_is_esc=True)# AS clause requires function alias
|
473 |
2070
|
aaronmk
|
|
474 |
2066
|
aaronmk
|
return (query, params)
|
475 |
|
|
|
476 |
|
|
def insert_select(db, *args, **kw_args):
|
477 |
2085
|
aaronmk
|
'''For params, see mk_insert_select() and run_query_into()
|
478 |
2072
|
aaronmk
|
@param into Name of temp table to place RETURNING values in
|
479 |
|
|
'''
|
480 |
|
|
into = kw_args.pop('into', None)
|
481 |
|
|
if into != None: kw_args['embeddable'] = True
|
482 |
2066
|
aaronmk
|
recover = kw_args.pop('recover', None)
|
483 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
484 |
|
|
|
485 |
|
|
query, params = mk_insert_select(db, *args, **kw_args)
|
486 |
2085
|
aaronmk
|
return run_query_into(db, query, params, into, recover, cacheable)
|
487 |
2063
|
aaronmk
|
|
488 |
2066
|
aaronmk
|
default = object() # tells insert() to use the default value for a column
|
489 |
|
|
|
490 |
2063
|
aaronmk
|
def insert(db, table, row, *args, **kw_args):
|
491 |
2085
|
aaronmk
|
'''For params, see insert_select()'''
|
492 |
1960
|
aaronmk
|
if lists.is_seq(row): cols = None
|
493 |
|
|
else:
|
494 |
|
|
cols = row.keys()
|
495 |
|
|
row = row.values()
|
496 |
|
|
row = list(row) # ensure that "!= []" works
|
497 |
|
|
|
498 |
1961
|
aaronmk
|
# Check for special values
|
499 |
|
|
labels = []
|
500 |
|
|
values = []
|
501 |
|
|
for value in row:
|
502 |
|
|
if value == default: labels.append('DEFAULT')
|
503 |
|
|
else:
|
504 |
|
|
labels.append('%s')
|
505 |
|
|
values.append(value)
|
506 |
|
|
|
507 |
|
|
# Build query
|
508 |
2063
|
aaronmk
|
if values != []: query = ' VALUES ('+(', '.join(labels))+')'
|
509 |
|
|
else: query = None
|
510 |
1554
|
aaronmk
|
|
511 |
2064
|
aaronmk
|
return insert_select(db, table, cols, query, values, *args, **kw_args)
|
512 |
11
|
aaronmk
|
|
513 |
135
|
aaronmk
|
def last_insert_id(db):
|
514 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
515 |
135
|
aaronmk
|
if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
|
516 |
|
|
elif module == 'MySQLdb': return db.insert_id()
|
517 |
|
|
else: return None
|
518 |
13
|
aaronmk
|
|
519 |
1968
|
aaronmk
|
def truncate(db, table, schema='public'):
|
520 |
|
|
return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
|
521 |
832
|
aaronmk
|
|
522 |
|
|
##### Database structure queries
|
523 |
|
|
|
524 |
2084
|
aaronmk
|
def pkey(db, table, recover=None, table_is_esc=False):
|
525 |
832
|
aaronmk
|
'''Assumed to be first column in table'''
|
526 |
2120
|
aaronmk
|
return col_names(select(db, table, limit=0, order_by=None, recover=recover,
|
527 |
2084
|
aaronmk
|
table_is_esc=table_is_esc)).next()
|
528 |
832
|
aaronmk
|
|
529 |
853
|
aaronmk
|
def index_cols(db, table, index):
|
530 |
|
|
'''Can also use this for UNIQUE constraints, because a UNIQUE index is
|
531 |
|
|
automatically created. When you don't know whether something is a UNIQUE
|
532 |
|
|
constraint or a UNIQUE index, use this function.'''
|
533 |
|
|
check_name(table)
|
534 |
|
|
check_name(index)
|
535 |
1909
|
aaronmk
|
module = util.root_module(db.db)
|
536 |
|
|
if module == 'psycopg2':
|
537 |
|
|
return list(values(run_query(db, '''\
|
538 |
853
|
aaronmk
|
SELECT attname
|
539 |
866
|
aaronmk
|
FROM
|
540 |
|
|
(
|
541 |
|
|
SELECT attnum, attname
|
542 |
|
|
FROM pg_index
|
543 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
544 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
545 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
|
546 |
|
|
WHERE
|
547 |
|
|
table_.relname = %(table)s
|
548 |
|
|
AND index.relname = %(index)s
|
549 |
|
|
UNION
|
550 |
|
|
SELECT attnum, attname
|
551 |
|
|
FROM
|
552 |
|
|
(
|
553 |
|
|
SELECT
|
554 |
|
|
indrelid
|
555 |
|
|
, (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
|
556 |
|
|
AS indkey
|
557 |
|
|
FROM pg_index
|
558 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
559 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
560 |
|
|
WHERE
|
561 |
|
|
table_.relname = %(table)s
|
562 |
|
|
AND index.relname = %(index)s
|
563 |
|
|
) s
|
564 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
|
565 |
|
|
) s
|
566 |
853
|
aaronmk
|
ORDER BY attnum
|
567 |
|
|
''',
|
568 |
1909
|
aaronmk
|
{'table': table, 'index': index}, cacheable=True)))
|
569 |
|
|
else: raise NotImplementedError("Can't list index columns for "+module+
|
570 |
|
|
' database')
|
571 |
853
|
aaronmk
|
|
572 |
464
|
aaronmk
|
def constraint_cols(db, table, constraint):
|
573 |
|
|
check_name(table)
|
574 |
|
|
check_name(constraint)
|
575 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
576 |
464
|
aaronmk
|
if module == 'psycopg2':
|
577 |
|
|
return list(values(run_query(db, '''\
|
578 |
|
|
SELECT attname
|
579 |
|
|
FROM pg_constraint
|
580 |
|
|
JOIN pg_class ON pg_class.oid = conrelid
|
581 |
|
|
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
|
582 |
|
|
WHERE
|
583 |
|
|
relname = %(table)s
|
584 |
|
|
AND conname = %(constraint)s
|
585 |
|
|
ORDER BY attnum
|
586 |
|
|
''',
|
587 |
|
|
{'table': table, 'constraint': constraint})))
|
588 |
|
|
else: raise NotImplementedError("Can't list constraint columns for "+module+
|
589 |
|
|
' database')
|
590 |
|
|
|
591 |
2096
|
aaronmk
|
row_num_col = '_row_num'
|
592 |
|
|
|
593 |
2086
|
aaronmk
|
def add_row_num(db, table):
|
594 |
2117
|
aaronmk
|
'''Adds a row number column to a table. Its name is in row_num_col. It will
|
595 |
|
|
be the primary key.'''
|
596 |
2086
|
aaronmk
|
check_name(table)
|
597 |
2096
|
aaronmk
|
run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
|
598 |
2117
|
aaronmk
|
+' serial NOT NULL PRIMARY KEY')
|
599 |
2086
|
aaronmk
|
|
600 |
1968
|
aaronmk
|
def tables(db, schema='public', table_like='%'):
|
601 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
602 |
1968
|
aaronmk
|
params = {'schema': schema, 'table_like': table_like}
|
603 |
832
|
aaronmk
|
if module == 'psycopg2':
|
604 |
1968
|
aaronmk
|
return values(run_query(db, '''\
|
605 |
|
|
SELECT tablename
|
606 |
|
|
FROM pg_tables
|
607 |
|
|
WHERE
|
608 |
|
|
schemaname = %(schema)s
|
609 |
|
|
AND tablename LIKE %(table_like)s
|
610 |
|
|
ORDER BY tablename
|
611 |
|
|
''',
|
612 |
|
|
params, cacheable=True))
|
613 |
|
|
elif module == 'MySQLdb':
|
614 |
|
|
return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
|
615 |
|
|
cacheable=True))
|
616 |
832
|
aaronmk
|
else: raise NotImplementedError("Can't list tables for "+module+' database')
|
617 |
830
|
aaronmk
|
|
618 |
833
|
aaronmk
|
##### Database management
|
619 |
|
|
|
620 |
1968
|
aaronmk
|
def empty_db(db, schema='public', **kw_args):
|
621 |
|
|
'''For kw_args, see tables()'''
|
622 |
|
|
for table in tables(db, schema, **kw_args): truncate(db, table, schema)
|
623 |
833
|
aaronmk
|
|
624 |
832
|
aaronmk
|
##### Heuristic queries
|
625 |
|
|
|
626 |
2104
|
aaronmk
|
def put(db, table, row, pkey_=None, row_ct_ref=None):
|
627 |
1554
|
aaronmk
|
'''Recovers from errors.
|
628 |
2077
|
aaronmk
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
629 |
|
|
'''
|
630 |
2104
|
aaronmk
|
if pkey_ == None: pkey_ = pkey(db, table, recover=True)
|
631 |
|
|
|
632 |
471
|
aaronmk
|
try:
|
633 |
2149
|
aaronmk
|
cur = insert(db, table, row, pkey_, recover=True)
|
634 |
1554
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
635 |
|
|
row_ct_ref[0] += cur.rowcount
|
636 |
|
|
return value(cur)
|
637 |
471
|
aaronmk
|
except DuplicateKeyException, e:
|
638 |
2104
|
aaronmk
|
return value(select(db, table, [pkey_],
|
639 |
1069
|
aaronmk
|
util.dict_subset_right_join(row, e.cols), recover=True))
|
640 |
471
|
aaronmk
|
|
641 |
473
|
aaronmk
|
def get(db, table, row, pkey, row_ct_ref=None, create=False):
|
642 |
830
|
aaronmk
|
'''Recovers from errors'''
|
643 |
|
|
try: return value(select(db, table, [pkey], row, 1, recover=True))
|
644 |
14
|
aaronmk
|
except StopIteration:
|
645 |
40
|
aaronmk
|
if not create: raise
|
646 |
471
|
aaronmk
|
return put(db, table, row, pkey, row_ct_ref) # insert new row
|
647 |
2078
|
aaronmk
|
|
648 |
2134
|
aaronmk
|
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
|
649 |
|
|
row_ct_ref=None, table_is_esc=False):
|
650 |
2078
|
aaronmk
|
'''Recovers from errors.
|
651 |
|
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
652 |
2131
|
aaronmk
|
@param in_tables The main input table to select from, followed by a list of
|
653 |
|
|
tables to join with it using the main input table's pkey
|
654 |
2133
|
aaronmk
|
@return (table, col) Where the pkeys (from INSERT RETURNING) are made
|
655 |
2078
|
aaronmk
|
available
|
656 |
|
|
'''
|
657 |
2142
|
aaronmk
|
temp_prefix = '_'.join(map(clean_name,
|
658 |
|
|
[out_table] + list(iters.flatten(mapping.items()))))
|
659 |
|
|
pkeys = temp_prefix+'_pkeys'
|
660 |
2131
|
aaronmk
|
|
661 |
2132
|
aaronmk
|
# Join together input tables
|
662 |
2131
|
aaronmk
|
in_tables = in_tables[:] # don't modify input!
|
663 |
|
|
in_tables0 = in_tables.pop(0) # first table is separate
|
664 |
|
|
in_pkey = pkey(db, in_tables0, recover=True, table_is_esc=table_is_esc)
|
665 |
2142
|
aaronmk
|
in_joins = [in_tables0] + [(t, {in_pkey: join_using}) for t in in_tables]
|
666 |
2131
|
aaronmk
|
|
667 |
2142
|
aaronmk
|
out_pkey = pkey(db, out_table, recover=True, table_is_esc=table_is_esc)
|
668 |
|
|
pkeys_cols = [in_pkey, out_pkey]
|
669 |
|
|
|
670 |
2132
|
aaronmk
|
def mk_select_(cols):
|
671 |
2142
|
aaronmk
|
return mk_select(db, in_joins, cols, limit=limit, start=start,
|
672 |
2134
|
aaronmk
|
table_is_esc=table_is_esc)
|
673 |
2132
|
aaronmk
|
|
674 |
2142
|
aaronmk
|
out_pkeys = temp_prefix+'_out_pkeys'
|
675 |
2078
|
aaronmk
|
def insert_():
|
676 |
2148
|
aaronmk
|
'''Inserts and capture output pkeys.'''
|
677 |
2132
|
aaronmk
|
cur = insert_select(db, out_table, mapping.keys(),
|
678 |
2133
|
aaronmk
|
*mk_select_(mapping.values()), returning=out_pkey,
|
679 |
2132
|
aaronmk
|
into=out_pkeys, recover=True, table_is_esc=table_is_esc)
|
680 |
2078
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
681 |
|
|
row_ct_ref[0] += cur.rowcount
|
682 |
2132
|
aaronmk
|
add_row_num(db, out_pkeys) # for joining it with in_pkeys
|
683 |
2086
|
aaronmk
|
|
684 |
2132
|
aaronmk
|
# Get input pkeys corresponding to rows in insert
|
685 |
2142
|
aaronmk
|
in_pkeys = temp_prefix+'_in_pkeys'
|
686 |
2132
|
aaronmk
|
run_query_into(db, *mk_select_([in_pkey]), into=in_pkeys)
|
687 |
|
|
add_row_num(db, in_pkeys) # for joining it with out_pkeys
|
688 |
2086
|
aaronmk
|
|
689 |
2132
|
aaronmk
|
# Join together out_pkeys and in_pkeys
|
690 |
|
|
run_query_into(db, *mk_select(db,
|
691 |
|
|
[in_pkeys, (out_pkeys, {row_num_col: join_using})],
|
692 |
2142
|
aaronmk
|
pkeys_cols, start=0), into=pkeys)
|
693 |
2132
|
aaronmk
|
|
694 |
2142
|
aaronmk
|
# Do inserts and selects
|
695 |
2148
|
aaronmk
|
try: insert_()
|
696 |
2142
|
aaronmk
|
except DuplicateKeyException, e:
|
697 |
|
|
join_cols = util.dict_subset_right_join(mapping, e.cols)
|
698 |
|
|
joins = in_joins + [(out_table, join_cols)]
|
699 |
|
|
run_query_into(db, *mk_select(db, joins, pkeys_cols,
|
700 |
|
|
table_is_esc=table_is_esc), into=pkeys)
|
701 |
|
|
|
702 |
|
|
return (pkeys, out_pkey)
|
703 |
2115
|
aaronmk
|
|
704 |
|
|
##### Data cleanup
|
705 |
|
|
|
706 |
|
|
def cleanup_table(db, table, cols, table_is_esc=False):
|
707 |
|
|
def esc_name_(name): return esc_name(db, name)
|
708 |
|
|
|
709 |
|
|
if not table_is_esc: check_name(table)
|
710 |
|
|
cols = map(esc_name_, cols)
|
711 |
|
|
|
712 |
|
|
run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
|
713 |
|
|
+' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
|
714 |
|
|
for col in cols))),
|
715 |
|
|
dict(null0='', null1=r'\N'))
|