1 |
11
|
aaronmk
|
# Database access
|
2 |
|
|
|
3 |
1869
|
aaronmk
|
import copy
|
4 |
2127
|
aaronmk
|
import operator
|
5 |
11
|
aaronmk
|
import re
|
6 |
865
|
aaronmk
|
import warnings
|
7 |
11
|
aaronmk
|
|
8 |
300
|
aaronmk
|
import exc
|
9 |
1909
|
aaronmk
|
import dicts
|
10 |
1893
|
aaronmk
|
import iters
|
11 |
1960
|
aaronmk
|
import lists
|
12 |
1889
|
aaronmk
|
from Proxy import Proxy
|
13 |
1872
|
aaronmk
|
import rand
|
14 |
862
|
aaronmk
|
import strings
|
15 |
131
|
aaronmk
|
import util
|
16 |
11
|
aaronmk
|
|
17 |
832
|
aaronmk
|
##### Exceptions
|
18 |
|
|
|
19 |
2170
|
aaronmk
|
def get_cur_query(cur, input_query=None, input_params=None):
|
20 |
2168
|
aaronmk
|
raw_query = None
|
21 |
|
|
if hasattr(cur, 'query'): raw_query = cur.query
|
22 |
|
|
elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
|
23 |
2170
|
aaronmk
|
|
24 |
|
|
if raw_query != None: return raw_query
|
25 |
|
|
else: return repr(input_query)+' % '+repr(input_params)
|
26 |
14
|
aaronmk
|
|
27 |
2170
|
aaronmk
|
def _add_cursor_info(e, *args, **kw_args):
|
28 |
|
|
'''For params, see get_cur_query()'''
|
29 |
|
|
exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
|
30 |
135
|
aaronmk
|
|
31 |
300
|
aaronmk
|
class DbException(exc.ExceptionWithCause):
|
32 |
14
|
aaronmk
|
def __init__(self, msg, cause=None, cur=None):
|
33 |
2145
|
aaronmk
|
exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
|
34 |
14
|
aaronmk
|
if cur != None: _add_cursor_info(self, cur)
|
35 |
|
|
|
36 |
2143
|
aaronmk
|
class ExceptionWithName(DbException):
|
37 |
|
|
def __init__(self, name, cause=None):
|
38 |
2145
|
aaronmk
|
DbException.__init__(self, 'for name: '+str(name), cause)
|
39 |
2143
|
aaronmk
|
self.name = name
|
40 |
360
|
aaronmk
|
|
41 |
468
|
aaronmk
|
class ExceptionWithColumns(DbException):
|
42 |
|
|
def __init__(self, cols, cause=None):
|
43 |
2145
|
aaronmk
|
DbException.__init__(self, 'for columns: '+(', '.join(cols)), cause)
|
44 |
468
|
aaronmk
|
self.cols = cols
|
45 |
11
|
aaronmk
|
|
46 |
2143
|
aaronmk
|
class NameException(DbException): pass
|
47 |
|
|
|
48 |
468
|
aaronmk
|
class DuplicateKeyException(ExceptionWithColumns): pass
|
49 |
13
|
aaronmk
|
|
50 |
468
|
aaronmk
|
class NullValueException(ExceptionWithColumns): pass
|
51 |
13
|
aaronmk
|
|
52 |
2143
|
aaronmk
|
class DuplicateTableException(ExceptionWithName): pass
|
53 |
|
|
|
54 |
2188
|
aaronmk
|
class DuplicateFunctionException(ExceptionWithName): pass
|
55 |
|
|
|
56 |
89
|
aaronmk
|
class EmptyRowException(DbException): pass
|
57 |
|
|
|
58 |
865
|
aaronmk
|
##### Warnings
|
59 |
|
|
|
60 |
|
|
class DbWarning(UserWarning): pass
|
61 |
|
|
|
62 |
1930
|
aaronmk
|
##### Result retrieval
|
63 |
|
|
|
64 |
|
|
def col_names(cur): return (col[0] for col in cur.description)
|
65 |
|
|
|
66 |
|
|
def rows(cur): return iter(lambda: cur.fetchone(), None)
|
67 |
|
|
|
68 |
|
|
def consume_rows(cur):
|
69 |
|
|
'''Used to fetch all rows so result will be cached'''
|
70 |
|
|
iters.consume_iter(rows(cur))
|
71 |
|
|
|
72 |
|
|
def next_row(cur): return rows(cur).next()
|
73 |
|
|
|
74 |
|
|
def row(cur):
|
75 |
|
|
row_ = next_row(cur)
|
76 |
|
|
consume_rows(cur)
|
77 |
|
|
return row_
|
78 |
|
|
|
79 |
|
|
def next_value(cur): return next_row(cur)[0]
|
80 |
|
|
|
81 |
|
|
def value(cur): return row(cur)[0]
|
82 |
|
|
|
83 |
|
|
def values(cur): return iters.func_iter(lambda: next_value(cur))
|
84 |
|
|
|
85 |
|
|
def value_or_none(cur):
|
86 |
|
|
try: return value(cur)
|
87 |
|
|
except StopIteration: return None
|
88 |
|
|
|
89 |
2101
|
aaronmk
|
##### Input validation
|
90 |
|
|
|
91 |
2198
|
aaronmk
|
def clean_name(name): return re.sub(r'\W', r'', name).lower()
|
92 |
2101
|
aaronmk
|
|
93 |
|
|
def check_name(name):
|
94 |
|
|
if re.search(r'\W', name) != None: raise NameException('Name "'+name
|
95 |
|
|
+'" may contain only alphanumeric characters and _')
|
96 |
|
|
|
97 |
|
|
def esc_name_by_module(module, name, ignore_case=False):
|
98 |
|
|
if module == 'psycopg2':
|
99 |
|
|
if ignore_case:
|
100 |
|
|
# Don't enclose in quotes because this disables case-insensitivity
|
101 |
|
|
check_name(name)
|
102 |
|
|
return name
|
103 |
|
|
else: quote = '"'
|
104 |
|
|
elif module == 'MySQLdb': quote = '`'
|
105 |
|
|
else: raise NotImplementedError("Can't escape name for "+module+' database')
|
106 |
|
|
return quote + name.replace(quote, '') + quote
|
107 |
|
|
|
108 |
|
|
def esc_name_by_engine(engine, name, **kw_args):
|
109 |
|
|
return esc_name_by_module(db_engines[engine][0], name, **kw_args)
|
110 |
|
|
|
111 |
|
|
def esc_name(db, name, **kw_args):
|
112 |
|
|
return esc_name_by_module(util.root_module(db.db), name, **kw_args)
|
113 |
|
|
|
114 |
|
|
def qual_name(db, schema, table):
|
115 |
|
|
def esc_name_(name): return esc_name(db, name)
|
116 |
|
|
table = esc_name_(table)
|
117 |
|
|
if schema != None: return esc_name_(schema)+'.'+table
|
118 |
|
|
else: return table
|
119 |
|
|
|
120 |
1869
|
aaronmk
|
##### Database connections
|
121 |
1849
|
aaronmk
|
|
122 |
2097
|
aaronmk
|
db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
|
123 |
1926
|
aaronmk
|
|
124 |
1869
|
aaronmk
|
db_engines = {
|
125 |
|
|
'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
|
126 |
|
|
'PostgreSQL': ('psycopg2', {}),
|
127 |
|
|
}
|
128 |
|
|
|
129 |
|
|
DatabaseErrors_set = set([DbException])
|
130 |
|
|
DatabaseErrors = tuple(DatabaseErrors_set)
|
131 |
|
|
|
132 |
|
|
def _add_module(module):
|
133 |
|
|
DatabaseErrors_set.add(module.DatabaseError)
|
134 |
|
|
global DatabaseErrors
|
135 |
|
|
DatabaseErrors = tuple(DatabaseErrors_set)
|
136 |
|
|
|
137 |
|
|
def db_config_str(db_config):
|
138 |
|
|
return db_config['engine']+' database '+db_config['database']
|
139 |
|
|
|
140 |
1909
|
aaronmk
|
def _query_lookup(query, params): return (query, dicts.make_hashable(params))
|
141 |
1894
|
aaronmk
|
|
142 |
1901
|
aaronmk
|
log_debug_none = lambda msg: None
|
143 |
|
|
|
144 |
1849
|
aaronmk
|
class DbConn:
|
145 |
2190
|
aaronmk
|
def __init__(self, db_config, serializable=True, autocommit=False,
|
146 |
|
|
caching=True, log_debug=log_debug_none):
|
147 |
1869
|
aaronmk
|
self.db_config = db_config
|
148 |
|
|
self.serializable = serializable
|
149 |
2190
|
aaronmk
|
self.autocommit = autocommit
|
150 |
|
|
self.caching = caching
|
151 |
1901
|
aaronmk
|
self.log_debug = log_debug
|
152 |
2193
|
aaronmk
|
self.debug = log_debug != log_debug_none
|
153 |
1869
|
aaronmk
|
|
154 |
|
|
self.__db = None
|
155 |
1889
|
aaronmk
|
self.query_results = {}
|
156 |
2139
|
aaronmk
|
self._savepoint = 0
|
157 |
1869
|
aaronmk
|
|
158 |
|
|
def __getattr__(self, name):
|
159 |
|
|
if name == '__dict__': raise Exception('getting __dict__')
|
160 |
|
|
if name == 'db': return self._db()
|
161 |
|
|
else: raise AttributeError()
|
162 |
|
|
|
163 |
|
|
def __getstate__(self):
|
164 |
|
|
state = copy.copy(self.__dict__) # shallow copy
|
165 |
1915
|
aaronmk
|
state['log_debug'] = None # don't pickle the debug callback
|
166 |
1869
|
aaronmk
|
state['_DbConn__db'] = None # don't pickle the connection
|
167 |
|
|
return state
|
168 |
|
|
|
169 |
2165
|
aaronmk
|
def connected(self): return self.__db != None
|
170 |
|
|
|
171 |
1869
|
aaronmk
|
def _db(self):
|
172 |
|
|
if self.__db == None:
|
173 |
|
|
# Process db_config
|
174 |
|
|
db_config = self.db_config.copy() # don't modify input!
|
175 |
2097
|
aaronmk
|
schemas = db_config.pop('schemas', None)
|
176 |
1869
|
aaronmk
|
module_name, mappings = db_engines[db_config.pop('engine')]
|
177 |
|
|
module = __import__(module_name)
|
178 |
|
|
_add_module(module)
|
179 |
|
|
for orig, new in mappings.iteritems():
|
180 |
|
|
try: util.rename_key(db_config, orig, new)
|
181 |
|
|
except KeyError: pass
|
182 |
|
|
|
183 |
|
|
# Connect
|
184 |
|
|
self.__db = module.connect(**db_config)
|
185 |
|
|
|
186 |
|
|
# Configure connection
|
187 |
2190
|
aaronmk
|
if self.serializable and not self.autocommit:
|
188 |
|
|
self.db.set_session(isolation_level='SERIALIZABLE')
|
189 |
2101
|
aaronmk
|
if schemas != None:
|
190 |
|
|
schemas_ = ''.join((esc_name(self, s)+', '
|
191 |
|
|
for s in schemas.split(',')))
|
192 |
|
|
run_raw_query(self, "SELECT set_config('search_path', \
|
193 |
|
|
%s || current_setting('search_path'), false)", [schemas_])
|
194 |
1869
|
aaronmk
|
|
195 |
|
|
return self.__db
|
196 |
1889
|
aaronmk
|
|
197 |
1891
|
aaronmk
|
class DbCursor(Proxy):
|
198 |
1927
|
aaronmk
|
def __init__(self, outer):
|
199 |
1891
|
aaronmk
|
Proxy.__init__(self, outer.db.cursor())
|
200 |
2191
|
aaronmk
|
self.outer = outer
|
201 |
1927
|
aaronmk
|
self.query_results = outer.query_results
|
202 |
1894
|
aaronmk
|
self.query_lookup = None
|
203 |
1891
|
aaronmk
|
self.result = []
|
204 |
1889
|
aaronmk
|
|
205 |
1894
|
aaronmk
|
def execute(self, query, params=None):
|
206 |
1930
|
aaronmk
|
self._is_insert = query.upper().find('INSERT') >= 0
|
207 |
1894
|
aaronmk
|
self.query_lookup = _query_lookup(query, params)
|
208 |
2148
|
aaronmk
|
try:
|
209 |
2191
|
aaronmk
|
try:
|
210 |
|
|
return_value = self.inner.execute(query, params)
|
211 |
|
|
self.outer.do_autocommit()
|
212 |
2148
|
aaronmk
|
finally: self.query = get_cur_query(self.inner)
|
213 |
1904
|
aaronmk
|
except Exception, e:
|
214 |
2170
|
aaronmk
|
_add_cursor_info(e, self, query, params)
|
215 |
1904
|
aaronmk
|
self.result = e # cache the exception as the result
|
216 |
|
|
self._cache_result()
|
217 |
|
|
raise
|
218 |
1930
|
aaronmk
|
# Fetch all rows so result will be cached
|
219 |
|
|
if self.rowcount == 0 and not self._is_insert: consume_rows(self)
|
220 |
1894
|
aaronmk
|
return return_value
|
221 |
|
|
|
222 |
1891
|
aaronmk
|
def fetchone(self):
|
223 |
|
|
row = self.inner.fetchone()
|
224 |
1899
|
aaronmk
|
if row != None: self.result.append(row)
|
225 |
|
|
# otherwise, fetched all rows
|
226 |
1904
|
aaronmk
|
else: self._cache_result()
|
227 |
|
|
return row
|
228 |
|
|
|
229 |
|
|
def _cache_result(self):
|
230 |
1906
|
aaronmk
|
# For inserts, only cache exceptions since inserts are not
|
231 |
|
|
# idempotent, but an invalid insert will always be invalid
|
232 |
1930
|
aaronmk
|
if self.query_results != None and (not self._is_insert
|
233 |
1906
|
aaronmk
|
or isinstance(self.result, Exception)):
|
234 |
|
|
|
235 |
1894
|
aaronmk
|
assert self.query_lookup != None
|
236 |
1916
|
aaronmk
|
self.query_results[self.query_lookup] = self.CacheCursor(
|
237 |
|
|
util.dict_subset(dicts.AttrsDictView(self),
|
238 |
|
|
['query', 'result', 'rowcount', 'description']))
|
239 |
1906
|
aaronmk
|
|
240 |
1916
|
aaronmk
|
class CacheCursor:
|
241 |
|
|
def __init__(self, cached_result): self.__dict__ = cached_result
|
242 |
|
|
|
243 |
1927
|
aaronmk
|
def execute(self, *args, **kw_args):
|
244 |
1916
|
aaronmk
|
if isinstance(self.result, Exception): raise self.result
|
245 |
|
|
# otherwise, result is a rows list
|
246 |
|
|
self.iter = iter(self.result)
|
247 |
|
|
|
248 |
|
|
def fetchone(self):
|
249 |
|
|
try: return self.iter.next()
|
250 |
|
|
except StopIteration: return None
|
251 |
1891
|
aaronmk
|
|
252 |
2212
|
aaronmk
|
def esc_value(self, value):
|
253 |
2215
|
aaronmk
|
module = util.root_module(self.db)
|
254 |
|
|
if module == 'psycopg2': return self.db.cursor().mogrify('%s', [value])
|
255 |
2212
|
aaronmk
|
elif module == 'MySQLdb':
|
256 |
|
|
import _mysql
|
257 |
|
|
return _mysql.escape_string(value)
|
258 |
|
|
else: raise NotImplementedError("Can't escape value for "+module
|
259 |
|
|
+' database')
|
260 |
|
|
|
261 |
1894
|
aaronmk
|
def run_query(self, query, params=None, cacheable=False):
|
262 |
2148
|
aaronmk
|
'''Translates known DB errors to typed exceptions:
|
263 |
|
|
See self.DbCursor.execute().'''
|
264 |
2167
|
aaronmk
|
assert query != None
|
265 |
|
|
|
266 |
2047
|
aaronmk
|
if not self.caching: cacheable = False
|
267 |
1903
|
aaronmk
|
used_cache = False
|
268 |
|
|
try:
|
269 |
1927
|
aaronmk
|
# Get cursor
|
270 |
|
|
if cacheable:
|
271 |
|
|
query_lookup = _query_lookup(query, params)
|
272 |
|
|
try:
|
273 |
|
|
cur = self.query_results[query_lookup]
|
274 |
|
|
used_cache = True
|
275 |
|
|
except KeyError: cur = self.DbCursor(self)
|
276 |
|
|
else: cur = self.db.cursor()
|
277 |
|
|
|
278 |
|
|
# Run query
|
279 |
2148
|
aaronmk
|
cur.execute(query, params)
|
280 |
1903
|
aaronmk
|
finally:
|
281 |
2193
|
aaronmk
|
if self.debug: # only compute msg if needed
|
282 |
1903
|
aaronmk
|
if used_cache: cache_status = 'Cache hit'
|
283 |
|
|
elif cacheable: cache_status = 'Cache miss'
|
284 |
|
|
else: cache_status = 'Non-cacheable'
|
285 |
1927
|
aaronmk
|
self.log_debug(cache_status+': '
|
286 |
2170
|
aaronmk
|
+strings.one_line(str(get_cur_query(cur, query, params))))
|
287 |
1903
|
aaronmk
|
|
288 |
|
|
return cur
|
289 |
1914
|
aaronmk
|
|
290 |
|
|
def is_cached(self, query, params=None):
|
291 |
|
|
return _query_lookup(query, params) in self.query_results
|
292 |
2139
|
aaronmk
|
|
293 |
|
|
def with_savepoint(self, func):
|
294 |
2171
|
aaronmk
|
savepoint = 'level_'+str(self._savepoint)
|
295 |
2139
|
aaronmk
|
self.run_query('SAVEPOINT '+savepoint)
|
296 |
|
|
self._savepoint += 1
|
297 |
|
|
try:
|
298 |
|
|
try: return_val = func()
|
299 |
|
|
finally:
|
300 |
|
|
self._savepoint -= 1
|
301 |
|
|
assert self._savepoint >= 0
|
302 |
|
|
except:
|
303 |
|
|
self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
|
304 |
|
|
raise
|
305 |
|
|
else:
|
306 |
|
|
self.run_query('RELEASE SAVEPOINT '+savepoint)
|
307 |
2191
|
aaronmk
|
self.do_autocommit()
|
308 |
2139
|
aaronmk
|
return return_val
|
309 |
2191
|
aaronmk
|
|
310 |
|
|
def do_autocommit(self):
|
311 |
|
|
'''Autocommits if outside savepoint'''
|
312 |
|
|
assert self._savepoint >= 0
|
313 |
|
|
if self.autocommit and self._savepoint == 0:
|
314 |
|
|
self.log_debug('Autocommiting')
|
315 |
|
|
self.db.commit()
|
316 |
1849
|
aaronmk
|
|
317 |
1869
|
aaronmk
|
connect = DbConn
|
318 |
|
|
|
319 |
832
|
aaronmk
|
##### Querying
|
320 |
|
|
|
321 |
1894
|
aaronmk
|
def run_raw_query(db, *args, **kw_args):
|
322 |
2085
|
aaronmk
|
'''For params, see DbConn.run_query()'''
|
323 |
1894
|
aaronmk
|
return db.run_query(*args, **kw_args)
|
324 |
11
|
aaronmk
|
|
325 |
2068
|
aaronmk
|
def mogrify(db, query, params):
|
326 |
|
|
module = util.root_module(db.db)
|
327 |
|
|
if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
|
328 |
|
|
else: raise NotImplementedError("Can't mogrify query for "+module+
|
329 |
|
|
' database')
|
330 |
|
|
|
331 |
832
|
aaronmk
|
##### Recoverable querying
|
332 |
15
|
aaronmk
|
|
333 |
2139
|
aaronmk
|
def with_savepoint(db, func): return db.with_savepoint(func)
|
334 |
11
|
aaronmk
|
|
335 |
1894
|
aaronmk
|
def run_query(db, query, params=None, recover=None, cacheable=False):
|
336 |
830
|
aaronmk
|
if recover == None: recover = False
|
337 |
|
|
|
338 |
2148
|
aaronmk
|
try:
|
339 |
|
|
def run(): return run_raw_query(db, query, params, cacheable)
|
340 |
|
|
if recover and not db.is_cached(query, params):
|
341 |
|
|
return with_savepoint(db, run)
|
342 |
|
|
else: return run() # don't need savepoint if cached
|
343 |
|
|
except Exception, e:
|
344 |
|
|
if not recover: raise # need savepoint to run index_cols()
|
345 |
|
|
msg = str(e)
|
346 |
|
|
match = re.search(r'duplicate key value violates unique constraint '
|
347 |
|
|
r'"((_?[^\W_]+)_[^"]+)"', msg)
|
348 |
|
|
if match:
|
349 |
|
|
constraint, table = match.groups()
|
350 |
|
|
try: cols = index_cols(db, table, constraint)
|
351 |
|
|
except NotImplementedError: raise e
|
352 |
|
|
else: raise DuplicateKeyException(cols, e)
|
353 |
|
|
match = re.search(r'null value in column "(\w+)" violates not-null '
|
354 |
|
|
'constraint', msg)
|
355 |
|
|
if match: raise NullValueException([match.group(1)], e)
|
356 |
|
|
match = re.search(r'relation "(\w+)" already exists', msg)
|
357 |
|
|
if match: raise DuplicateTableException(match.group(1), e)
|
358 |
2188
|
aaronmk
|
match = re.search(r'function "(\w+)" already exists', msg)
|
359 |
|
|
if match: raise DuplicateFunctionException(match.group(1), e)
|
360 |
2148
|
aaronmk
|
raise # no specific exception raised
|
361 |
830
|
aaronmk
|
|
362 |
832
|
aaronmk
|
##### Basic queries
|
363 |
|
|
|
364 |
2153
|
aaronmk
|
def next_version(name):
|
365 |
|
|
'''Prepends the version # so it won't be removed if the name is truncated'''
|
366 |
2163
|
aaronmk
|
version = 1 # first existing name was version 0
|
367 |
2153
|
aaronmk
|
match = re.match(r'^v(\d+)_(.*)$', name)
|
368 |
|
|
if match:
|
369 |
|
|
version = int(match.group(1))+1
|
370 |
|
|
name = match.group(2)
|
371 |
|
|
return 'v'+str(version)+'_'+name
|
372 |
|
|
|
373 |
2151
|
aaronmk
|
def run_query_into(db, query, params, into_ref=None, *args, **kw_args):
|
374 |
2085
|
aaronmk
|
'''Outputs a query to a temp table.
|
375 |
|
|
For params, see run_query().
|
376 |
|
|
'''
|
377 |
2151
|
aaronmk
|
if into_ref == None: return run_query(db, query, params, *args, **kw_args)
|
378 |
2085
|
aaronmk
|
else: # place rows in temp table
|
379 |
2151
|
aaronmk
|
check_name(into_ref[0])
|
380 |
2153
|
aaronmk
|
kw_args['recover'] = True
|
381 |
|
|
while True:
|
382 |
|
|
try:
|
383 |
2194
|
aaronmk
|
create_query = 'CREATE'
|
384 |
|
|
if not db.debug: create_query += ' TEMP'
|
385 |
|
|
create_query += ' TABLE '+into_ref[0]+' AS '+query
|
386 |
|
|
|
387 |
|
|
return run_query(db, create_query, params, *args, **kw_args)
|
388 |
2153
|
aaronmk
|
# CREATE TABLE AS sets rowcount to # rows in query
|
389 |
|
|
except DuplicateTableException, e:
|
390 |
|
|
into_ref[0] = next_version(into_ref[0])
|
391 |
|
|
# try again with next version of name
|
392 |
2085
|
aaronmk
|
|
393 |
2120
|
aaronmk
|
order_by_pkey = object() # tells mk_select() to order by the pkey
|
394 |
|
|
|
395 |
2127
|
aaronmk
|
join_using = object() # tells mk_select() to join the column with USING
|
396 |
|
|
|
397 |
2187
|
aaronmk
|
filter_out = object() # tells mk_select() to filter out rows that match the join
|
398 |
2180
|
aaronmk
|
|
399 |
2199
|
aaronmk
|
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
|
400 |
|
|
|
401 |
|
|
def mk_select(db, tables, fields=None, conds=None, distinct_on=None, limit=None,
|
402 |
|
|
start=None, order_by=order_by_pkey, table_is_esc=False):
|
403 |
1981
|
aaronmk
|
'''
|
404 |
2121
|
aaronmk
|
@param tables The single table to select from, or a list of tables to join
|
405 |
2187
|
aaronmk
|
together: [table0, (table1, joins), ...]
|
406 |
|
|
|
407 |
|
|
joins has the format: dict(right_col=left_col, ...)
|
408 |
|
|
* if left_col is join_using, left_col is set to right_col
|
409 |
|
|
* if left_col is filter_out, the tables are LEFT JOINed together and the
|
410 |
|
|
query is filtered by `right_col IS NULL` (indicating no match)
|
411 |
1981
|
aaronmk
|
@param fields Use None to select all fields in the table
|
412 |
2199
|
aaronmk
|
@param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
|
413 |
|
|
use all columns
|
414 |
1981
|
aaronmk
|
@param table_is_esc Whether the table name has already been escaped
|
415 |
2054
|
aaronmk
|
@return tuple(query, params)
|
416 |
1981
|
aaronmk
|
'''
|
417 |
2060
|
aaronmk
|
def esc_name_(name): return esc_name(db, name)
|
418 |
2058
|
aaronmk
|
|
419 |
2121
|
aaronmk
|
if not lists.is_seq(tables): tables = [tables]
|
420 |
2141
|
aaronmk
|
tables = list(tables) # don't modify input! (list() copies input)
|
421 |
2121
|
aaronmk
|
table0 = tables.pop(0) # first table is separate
|
422 |
|
|
|
423 |
1135
|
aaronmk
|
if conds == None: conds = {}
|
424 |
135
|
aaronmk
|
assert limit == None or type(limit) == int
|
425 |
865
|
aaronmk
|
assert start == None or type(start) == int
|
426 |
2120
|
aaronmk
|
if order_by == order_by_pkey:
|
427 |
2121
|
aaronmk
|
order_by = pkey(db, table0, recover=True, table_is_esc=table_is_esc)
|
428 |
|
|
if not table_is_esc: table0 = esc_name_(table0)
|
429 |
865
|
aaronmk
|
|
430 |
2056
|
aaronmk
|
params = []
|
431 |
|
|
|
432 |
2161
|
aaronmk
|
def parse_col(field, default_table=None):
|
433 |
2056
|
aaronmk
|
'''Parses fields'''
|
434 |
2176
|
aaronmk
|
if field == None: field = (field,) # for None values, tuple is optional
|
435 |
2157
|
aaronmk
|
is_tuple = isinstance(field, tuple)
|
436 |
|
|
if is_tuple and len(field) == 1: # field is literal value
|
437 |
|
|
value, = field
|
438 |
2056
|
aaronmk
|
sql_ = '%s'
|
439 |
|
|
params.append(value)
|
440 |
2157
|
aaronmk
|
elif is_tuple and len(field) == 2: # field is col with table
|
441 |
|
|
table, col = field
|
442 |
|
|
if not table_is_esc: table = esc_name_(table)
|
443 |
|
|
sql_ = table+'.'+esc_name_(col)
|
444 |
2161
|
aaronmk
|
else:
|
445 |
|
|
sql_ = esc_name_(field) # field is col name
|
446 |
|
|
if default_table != None: sql_ = default_table+'.'+sql_
|
447 |
2056
|
aaronmk
|
return sql_
|
448 |
11
|
aaronmk
|
def cond(entry):
|
449 |
2056
|
aaronmk
|
'''Parses conditions'''
|
450 |
13
|
aaronmk
|
col, value = entry
|
451 |
2187
|
aaronmk
|
cond_ = parse_col(col)+' '
|
452 |
11
|
aaronmk
|
if value == None: cond_ += 'IS'
|
453 |
|
|
else: cond_ += '='
|
454 |
|
|
cond_ += ' %s'
|
455 |
|
|
return cond_
|
456 |
2056
|
aaronmk
|
|
457 |
2200
|
aaronmk
|
query = 'SELECT'
|
458 |
|
|
|
459 |
|
|
# DISTINCT ON columns
|
460 |
|
|
if distinct_on != None:
|
461 |
|
|
query += ' DISTINCT'
|
462 |
|
|
if distinct_on != distinct_on_all:
|
463 |
|
|
query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
|
464 |
|
|
|
465 |
|
|
# Columns
|
466 |
|
|
query += ' '
|
467 |
1135
|
aaronmk
|
if fields == None: query += '*'
|
468 |
2056
|
aaronmk
|
else: query += ', '.join(map(parse_col, fields))
|
469 |
2200
|
aaronmk
|
|
470 |
|
|
# Main table
|
471 |
2121
|
aaronmk
|
query += ' FROM '+table0
|
472 |
865
|
aaronmk
|
|
473 |
2122
|
aaronmk
|
# Add joins
|
474 |
|
|
left_table = table0
|
475 |
|
|
for table, joins in tables:
|
476 |
|
|
if not table_is_esc: table = esc_name_(table)
|
477 |
|
|
|
478 |
2187
|
aaronmk
|
left_join_ref = [False]
|
479 |
|
|
|
480 |
2122
|
aaronmk
|
def join(entry):
|
481 |
2127
|
aaronmk
|
'''Parses non-USING joins'''
|
482 |
2124
|
aaronmk
|
right_col, left_col = entry
|
483 |
2173
|
aaronmk
|
|
484 |
2179
|
aaronmk
|
# Parse special values
|
485 |
2176
|
aaronmk
|
if left_col == None: left_col = (left_col,)
|
486 |
|
|
# for None values, tuple is optional
|
487 |
2179
|
aaronmk
|
elif left_col == join_using: left_col = right_col
|
488 |
2187
|
aaronmk
|
elif left_col == filter_out:
|
489 |
2180
|
aaronmk
|
left_col = right_col
|
490 |
2187
|
aaronmk
|
left_join_ref[0] = True
|
491 |
|
|
conds[(table, right_col)] = None # filter query by no match
|
492 |
2179
|
aaronmk
|
|
493 |
|
|
# Create SQL
|
494 |
2185
|
aaronmk
|
right_col = table+'.'+esc_name_(right_col)
|
495 |
|
|
sql_ = right_col+' '
|
496 |
2173
|
aaronmk
|
if isinstance(left_col, tuple) and len(left_col) == 1:
|
497 |
|
|
# col is literal value
|
498 |
|
|
value, = left_col
|
499 |
|
|
if value == None: sql_ += 'IS'
|
500 |
|
|
else: sql_ += '='
|
501 |
|
|
sql_ += ' %s'
|
502 |
|
|
params.append(value)
|
503 |
|
|
else: # col is name
|
504 |
|
|
left_col = parse_col(left_col, left_table)
|
505 |
|
|
sql_ += ('= '+left_col+' OR ('+right_col+' IS NULL AND '
|
506 |
|
|
+left_col+' IS NULL)')
|
507 |
|
|
|
508 |
|
|
return sql_
|
509 |
2122
|
aaronmk
|
|
510 |
2187
|
aaronmk
|
# Create join condition and determine join type
|
511 |
2127
|
aaronmk
|
if reduce(operator.and_, (v == join_using for v in joins.itervalues())):
|
512 |
2179
|
aaronmk
|
# all cols w/ USING, so can use simpler USING syntax
|
513 |
2187
|
aaronmk
|
join_cond = 'USING ('+(', '.join(joins.iterkeys()))+')'
|
514 |
|
|
else: join_cond = 'ON '+(' AND '.join(map(join, joins.iteritems())))
|
515 |
2127
|
aaronmk
|
|
516 |
2187
|
aaronmk
|
# Create join
|
517 |
|
|
if left_join_ref[0]: query += ' LEFT'
|
518 |
|
|
query += ' JOIN '+table+' '+join_cond
|
519 |
|
|
|
520 |
2122
|
aaronmk
|
left_table = table
|
521 |
|
|
|
522 |
865
|
aaronmk
|
missing = True
|
523 |
89
|
aaronmk
|
if conds != {}:
|
524 |
2122
|
aaronmk
|
query += ' WHERE '+(' AND '.join(map(cond, conds.iteritems())))
|
525 |
2056
|
aaronmk
|
params += conds.values()
|
526 |
865
|
aaronmk
|
missing = False
|
527 |
2186
|
aaronmk
|
if order_by != None: query += ' ORDER BY '+parse_col(order_by, table0)
|
528 |
865
|
aaronmk
|
if limit != None: query += ' LIMIT '+str(limit); missing = False
|
529 |
|
|
if start != None:
|
530 |
|
|
if start != 0: query += ' OFFSET '+str(start)
|
531 |
|
|
missing = False
|
532 |
|
|
if missing: warnings.warn(DbWarning(
|
533 |
|
|
'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
|
534 |
|
|
|
535 |
2056
|
aaronmk
|
return (query, params)
|
536 |
11
|
aaronmk
|
|
537 |
2054
|
aaronmk
|
def select(db, *args, **kw_args):
|
538 |
|
|
'''For params, see mk_select() and run_query()'''
|
539 |
|
|
recover = kw_args.pop('recover', None)
|
540 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
541 |
|
|
|
542 |
|
|
query, params = mk_select(db, *args, **kw_args)
|
543 |
|
|
return run_query(db, query, params, recover, cacheable)
|
544 |
|
|
|
545 |
2066
|
aaronmk
|
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
|
546 |
2070
|
aaronmk
|
returning=None, embeddable=False, table_is_esc=False):
|
547 |
1960
|
aaronmk
|
'''
|
548 |
|
|
@param returning str|None An inserted column (such as pkey) to return
|
549 |
2070
|
aaronmk
|
@param embeddable Whether the query should be embeddable as a nested SELECT.
|
550 |
2073
|
aaronmk
|
Warning: If you set this and cacheable=True when the query is run, the
|
551 |
|
|
query will be fully cached, not just if it raises an exception.
|
552 |
1960
|
aaronmk
|
@param table_is_esc Whether the table name has already been escaped
|
553 |
|
|
'''
|
554 |
2063
|
aaronmk
|
if select_query == None: select_query = 'DEFAULT VALUES'
|
555 |
|
|
if cols == []: cols = None # no cols (all defaults) = unknown col names
|
556 |
1960
|
aaronmk
|
if not table_is_esc: check_name(table)
|
557 |
2063
|
aaronmk
|
|
558 |
|
|
# Build query
|
559 |
|
|
query = 'INSERT INTO '+table
|
560 |
|
|
if cols != None:
|
561 |
|
|
map(check_name, cols)
|
562 |
|
|
query += ' ('+', '.join(cols)+')'
|
563 |
|
|
query += ' '+select_query
|
564 |
|
|
|
565 |
|
|
if returning != None:
|
566 |
|
|
check_name(returning)
|
567 |
|
|
query += ' RETURNING '+returning
|
568 |
|
|
|
569 |
2070
|
aaronmk
|
if embeddable:
|
570 |
|
|
# Create function
|
571 |
2189
|
aaronmk
|
function_name = '_'.join(map(clean_name, ['insert', table] + cols))
|
572 |
2070
|
aaronmk
|
return_type = 'SETOF '+table+'.'+returning+'%TYPE'
|
573 |
2189
|
aaronmk
|
while True:
|
574 |
|
|
try:
|
575 |
2194
|
aaronmk
|
function = function_name
|
576 |
|
|
if not db.debug: function = 'pg_temp.'+function
|
577 |
|
|
|
578 |
2189
|
aaronmk
|
function_query = '''\
|
579 |
|
|
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
|
580 |
2070
|
aaronmk
|
LANGUAGE sql
|
581 |
|
|
AS $$'''+mogrify(db, query, params)+''';$$;
|
582 |
|
|
'''
|
583 |
2189
|
aaronmk
|
run_query(db, function_query, recover=True, cacheable=True)
|
584 |
|
|
break # this version was successful
|
585 |
|
|
except DuplicateFunctionException, e:
|
586 |
|
|
function_name = next_version(function_name)
|
587 |
|
|
# try again with next version of name
|
588 |
2070
|
aaronmk
|
|
589 |
|
|
# Return query that uses function
|
590 |
2134
|
aaronmk
|
return mk_select(db, function+'() AS f ('+returning+')', start=0,
|
591 |
|
|
order_by=None, table_is_esc=True)# AS clause requires function alias
|
592 |
2070
|
aaronmk
|
|
593 |
2066
|
aaronmk
|
return (query, params)
|
594 |
|
|
|
595 |
|
|
def insert_select(db, *args, **kw_args):
|
596 |
2085
|
aaronmk
|
'''For params, see mk_insert_select() and run_query_into()
|
597 |
2152
|
aaronmk
|
@param into_ref List with name of temp table to place RETURNING values in
|
598 |
2072
|
aaronmk
|
'''
|
599 |
2151
|
aaronmk
|
into_ref = kw_args.pop('into_ref', None)
|
600 |
|
|
if into_ref != None: kw_args['embeddable'] = True
|
601 |
2066
|
aaronmk
|
recover = kw_args.pop('recover', None)
|
602 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
603 |
|
|
|
604 |
|
|
query, params = mk_insert_select(db, *args, **kw_args)
|
605 |
2153
|
aaronmk
|
return run_query_into(db, query, params, into_ref, recover=recover,
|
606 |
|
|
cacheable=cacheable)
|
607 |
2063
|
aaronmk
|
|
608 |
2066
|
aaronmk
|
default = object() # tells insert() to use the default value for a column
|
609 |
|
|
|
610 |
2063
|
aaronmk
|
def insert(db, table, row, *args, **kw_args):
|
611 |
2085
|
aaronmk
|
'''For params, see insert_select()'''
|
612 |
1960
|
aaronmk
|
if lists.is_seq(row): cols = None
|
613 |
|
|
else:
|
614 |
|
|
cols = row.keys()
|
615 |
|
|
row = row.values()
|
616 |
|
|
row = list(row) # ensure that "!= []" works
|
617 |
|
|
|
618 |
1961
|
aaronmk
|
# Check for special values
|
619 |
|
|
labels = []
|
620 |
|
|
values = []
|
621 |
|
|
for value in row:
|
622 |
|
|
if value == default: labels.append('DEFAULT')
|
623 |
|
|
else:
|
624 |
|
|
labels.append('%s')
|
625 |
|
|
values.append(value)
|
626 |
|
|
|
627 |
|
|
# Build query
|
628 |
2063
|
aaronmk
|
if values != []: query = ' VALUES ('+(', '.join(labels))+')'
|
629 |
|
|
else: query = None
|
630 |
1554
|
aaronmk
|
|
631 |
2064
|
aaronmk
|
return insert_select(db, table, cols, query, values, *args, **kw_args)
|
632 |
11
|
aaronmk
|
|
633 |
135
|
aaronmk
|
def last_insert_id(db):
|
634 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
635 |
135
|
aaronmk
|
if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
|
636 |
|
|
elif module == 'MySQLdb': return db.insert_id()
|
637 |
|
|
else: return None
|
638 |
13
|
aaronmk
|
|
639 |
1968
|
aaronmk
|
def truncate(db, table, schema='public'):
|
640 |
|
|
return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
|
641 |
832
|
aaronmk
|
|
642 |
|
|
##### Database structure queries
|
643 |
|
|
|
644 |
2084
|
aaronmk
|
def pkey(db, table, recover=None, table_is_esc=False):
|
645 |
832
|
aaronmk
|
'''Assumed to be first column in table'''
|
646 |
2120
|
aaronmk
|
return col_names(select(db, table, limit=0, order_by=None, recover=recover,
|
647 |
2084
|
aaronmk
|
table_is_esc=table_is_esc)).next()
|
648 |
832
|
aaronmk
|
|
649 |
853
|
aaronmk
|
def index_cols(db, table, index):
|
650 |
|
|
'''Can also use this for UNIQUE constraints, because a UNIQUE index is
|
651 |
|
|
automatically created. When you don't know whether something is a UNIQUE
|
652 |
|
|
constraint or a UNIQUE index, use this function.'''
|
653 |
|
|
check_name(table)
|
654 |
|
|
check_name(index)
|
655 |
1909
|
aaronmk
|
module = util.root_module(db.db)
|
656 |
|
|
if module == 'psycopg2':
|
657 |
|
|
return list(values(run_query(db, '''\
|
658 |
853
|
aaronmk
|
SELECT attname
|
659 |
866
|
aaronmk
|
FROM
|
660 |
|
|
(
|
661 |
|
|
SELECT attnum, attname
|
662 |
|
|
FROM pg_index
|
663 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
664 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
665 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
|
666 |
|
|
WHERE
|
667 |
|
|
table_.relname = %(table)s
|
668 |
|
|
AND index.relname = %(index)s
|
669 |
|
|
UNION
|
670 |
|
|
SELECT attnum, attname
|
671 |
|
|
FROM
|
672 |
|
|
(
|
673 |
|
|
SELECT
|
674 |
|
|
indrelid
|
675 |
|
|
, (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
|
676 |
|
|
AS indkey
|
677 |
|
|
FROM pg_index
|
678 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
679 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
680 |
|
|
WHERE
|
681 |
|
|
table_.relname = %(table)s
|
682 |
|
|
AND index.relname = %(index)s
|
683 |
|
|
) s
|
684 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
|
685 |
|
|
) s
|
686 |
853
|
aaronmk
|
ORDER BY attnum
|
687 |
|
|
''',
|
688 |
1909
|
aaronmk
|
{'table': table, 'index': index}, cacheable=True)))
|
689 |
|
|
else: raise NotImplementedError("Can't list index columns for "+module+
|
690 |
|
|
' database')
|
691 |
853
|
aaronmk
|
|
692 |
464
|
aaronmk
|
def constraint_cols(db, table, constraint):
|
693 |
|
|
check_name(table)
|
694 |
|
|
check_name(constraint)
|
695 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
696 |
464
|
aaronmk
|
if module == 'psycopg2':
|
697 |
|
|
return list(values(run_query(db, '''\
|
698 |
|
|
SELECT attname
|
699 |
|
|
FROM pg_constraint
|
700 |
|
|
JOIN pg_class ON pg_class.oid = conrelid
|
701 |
|
|
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
|
702 |
|
|
WHERE
|
703 |
|
|
relname = %(table)s
|
704 |
|
|
AND conname = %(constraint)s
|
705 |
|
|
ORDER BY attnum
|
706 |
|
|
''',
|
707 |
|
|
{'table': table, 'constraint': constraint})))
|
708 |
|
|
else: raise NotImplementedError("Can't list constraint columns for "+module+
|
709 |
|
|
' database')
|
710 |
|
|
|
711 |
2096
|
aaronmk
|
row_num_col = '_row_num'
|
712 |
|
|
|
713 |
2086
|
aaronmk
|
def add_row_num(db, table):
|
714 |
2117
|
aaronmk
|
'''Adds a row number column to a table. Its name is in row_num_col. It will
|
715 |
|
|
be the primary key.'''
|
716 |
2086
|
aaronmk
|
check_name(table)
|
717 |
2096
|
aaronmk
|
run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
|
718 |
2117
|
aaronmk
|
+' serial NOT NULL PRIMARY KEY')
|
719 |
2086
|
aaronmk
|
|
720 |
1968
|
aaronmk
|
def tables(db, schema='public', table_like='%'):
|
721 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
722 |
1968
|
aaronmk
|
params = {'schema': schema, 'table_like': table_like}
|
723 |
832
|
aaronmk
|
if module == 'psycopg2':
|
724 |
1968
|
aaronmk
|
return values(run_query(db, '''\
|
725 |
|
|
SELECT tablename
|
726 |
|
|
FROM pg_tables
|
727 |
|
|
WHERE
|
728 |
|
|
schemaname = %(schema)s
|
729 |
|
|
AND tablename LIKE %(table_like)s
|
730 |
|
|
ORDER BY tablename
|
731 |
|
|
''',
|
732 |
|
|
params, cacheable=True))
|
733 |
|
|
elif module == 'MySQLdb':
|
734 |
|
|
return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
|
735 |
|
|
cacheable=True))
|
736 |
832
|
aaronmk
|
else: raise NotImplementedError("Can't list tables for "+module+' database')
|
737 |
830
|
aaronmk
|
|
738 |
833
|
aaronmk
|
##### Database management
|
739 |
|
|
|
740 |
1968
|
aaronmk
|
def empty_db(db, schema='public', **kw_args):
|
741 |
|
|
'''For kw_args, see tables()'''
|
742 |
|
|
for table in tables(db, schema, **kw_args): truncate(db, table, schema)
|
743 |
833
|
aaronmk
|
|
744 |
832
|
aaronmk
|
##### Heuristic queries
|
745 |
|
|
|
746 |
2104
|
aaronmk
|
def put(db, table, row, pkey_=None, row_ct_ref=None):
|
747 |
1554
|
aaronmk
|
'''Recovers from errors.
|
748 |
2077
|
aaronmk
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
749 |
|
|
'''
|
750 |
2104
|
aaronmk
|
if pkey_ == None: pkey_ = pkey(db, table, recover=True)
|
751 |
|
|
|
752 |
471
|
aaronmk
|
try:
|
753 |
2149
|
aaronmk
|
cur = insert(db, table, row, pkey_, recover=True)
|
754 |
1554
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
755 |
|
|
row_ct_ref[0] += cur.rowcount
|
756 |
|
|
return value(cur)
|
757 |
471
|
aaronmk
|
except DuplicateKeyException, e:
|
758 |
2104
|
aaronmk
|
return value(select(db, table, [pkey_],
|
759 |
1069
|
aaronmk
|
util.dict_subset_right_join(row, e.cols), recover=True))
|
760 |
471
|
aaronmk
|
|
761 |
473
|
aaronmk
|
def get(db, table, row, pkey, row_ct_ref=None, create=False):
|
762 |
830
|
aaronmk
|
'''Recovers from errors'''
|
763 |
2209
|
aaronmk
|
try: return value(select(db, table, [pkey], row, limit=1, recover=True))
|
764 |
14
|
aaronmk
|
except StopIteration:
|
765 |
40
|
aaronmk
|
if not create: raise
|
766 |
471
|
aaronmk
|
return put(db, table, row, pkey, row_ct_ref) # insert new row
|
767 |
2078
|
aaronmk
|
|
768 |
2134
|
aaronmk
|
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
|
769 |
|
|
row_ct_ref=None, table_is_esc=False):
|
770 |
2078
|
aaronmk
|
'''Recovers from errors.
|
771 |
|
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
772 |
2131
|
aaronmk
|
@param in_tables The main input table to select from, followed by a list of
|
773 |
|
|
tables to join with it using the main input table's pkey
|
774 |
2133
|
aaronmk
|
@return (table, col) Where the pkeys (from INSERT RETURNING) are made
|
775 |
2078
|
aaronmk
|
available
|
776 |
|
|
'''
|
777 |
2162
|
aaronmk
|
temp_suffix = clean_name(out_table)
|
778 |
2158
|
aaronmk
|
# suffix, not prefix, so main name won't be removed if name is truncated
|
779 |
|
|
pkeys_ref = ['pkeys_'+temp_suffix]
|
780 |
2131
|
aaronmk
|
|
781 |
2132
|
aaronmk
|
# Join together input tables
|
782 |
2131
|
aaronmk
|
in_tables = in_tables[:] # don't modify input!
|
783 |
|
|
in_tables0 = in_tables.pop(0) # first table is separate
|
784 |
|
|
in_pkey = pkey(db, in_tables0, recover=True, table_is_esc=table_is_esc)
|
785 |
2178
|
aaronmk
|
insert_joins = [in_tables0]+[(t, {in_pkey: join_using}) for t in in_tables]
|
786 |
2131
|
aaronmk
|
|
787 |
2142
|
aaronmk
|
out_pkey = pkey(db, out_table, recover=True, table_is_esc=table_is_esc)
|
788 |
|
|
pkeys_cols = [in_pkey, out_pkey]
|
789 |
|
|
|
790 |
2201
|
aaronmk
|
pkeys_table_exists_ref = [False]
|
791 |
|
|
def run_query_into_pkeys(query, params):
|
792 |
|
|
if pkeys_table_exists_ref[0]:
|
793 |
|
|
insert_select(db, pkeys_ref[0], pkeys_cols, query, params)
|
794 |
|
|
else:
|
795 |
|
|
run_query_into(db, query, params, into_ref=pkeys_ref)
|
796 |
|
|
pkeys_table_exists_ref[0] = True
|
797 |
|
|
|
798 |
2208
|
aaronmk
|
conds = {}
|
799 |
2207
|
aaronmk
|
distinct_on = None
|
800 |
|
|
def mk_main_select(cols):
|
801 |
2208
|
aaronmk
|
return mk_select(db, insert_joins, cols, conds, distinct_on,
|
802 |
2205
|
aaronmk
|
order_by=None, limit=limit, start=start, table_is_esc=table_is_esc)
|
803 |
2132
|
aaronmk
|
|
804 |
2206
|
aaronmk
|
# Do inserts and selects
|
805 |
2158
|
aaronmk
|
out_pkeys_ref = ['out_pkeys_'+temp_suffix]
|
806 |
2206
|
aaronmk
|
while True:
|
807 |
|
|
try:
|
808 |
|
|
cur = insert_select(db, out_table, mapping.keys(),
|
809 |
2207
|
aaronmk
|
*mk_main_select(mapping.values()), returning=out_pkey,
|
810 |
2206
|
aaronmk
|
into_ref=out_pkeys_ref, recover=True, table_is_esc=table_is_esc)
|
811 |
|
|
if row_ct_ref != None and cur.rowcount >= 0:
|
812 |
|
|
row_ct_ref[0] += cur.rowcount
|
813 |
|
|
add_row_num(db, out_pkeys_ref[0]) # for joining with input pkeys
|
814 |
|
|
|
815 |
|
|
# Get input pkeys corresponding to rows in insert
|
816 |
|
|
in_pkeys_ref = ['in_pkeys_'+temp_suffix]
|
817 |
2207
|
aaronmk
|
run_query_into(db, *mk_main_select([in_pkey]),
|
818 |
|
|
into_ref=in_pkeys_ref)
|
819 |
2206
|
aaronmk
|
add_row_num(db, in_pkeys_ref[0]) # for joining with output pkeys
|
820 |
|
|
|
821 |
|
|
# Join together output and input pkeys
|
822 |
|
|
run_query_into_pkeys(*mk_select(db, [in_pkeys_ref[0],
|
823 |
|
|
(out_pkeys_ref[0], {row_num_col: join_using})], pkeys_cols,
|
824 |
|
|
start=0))
|
825 |
|
|
|
826 |
|
|
break # insert successful
|
827 |
|
|
except DuplicateKeyException, e:
|
828 |
|
|
join_cols = util.dict_subset_right_join(mapping, e.cols)
|
829 |
|
|
select_joins = insert_joins + [(out_table, join_cols)]
|
830 |
|
|
|
831 |
|
|
# Get pkeys of already existing rows
|
832 |
|
|
run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols,
|
833 |
|
|
order_by=None, start=0, table_is_esc=table_is_esc))
|
834 |
|
|
|
835 |
|
|
# Save existing pkeys in temp table for joining on
|
836 |
|
|
existing_pkeys_ref = ['existing_pkeys_'+temp_suffix]
|
837 |
|
|
run_query_into(db, *mk_select(db, pkeys_ref[0], [in_pkey],
|
838 |
|
|
order_by=None, start=0, table_is_esc=True),
|
839 |
|
|
into_ref=existing_pkeys_ref)
|
840 |
|
|
# need table_is_esc=True to make table name case-insensitive
|
841 |
|
|
|
842 |
|
|
# rerun loop with additional constraints
|
843 |
|
|
break # but until NullValueExceptions are handled, end loop here
|
844 |
2132
|
aaronmk
|
|
845 |
2154
|
aaronmk
|
return (pkeys_ref[0], out_pkey)
|
846 |
2115
|
aaronmk
|
|
847 |
|
|
##### Data cleanup
|
848 |
|
|
|
849 |
|
|
def cleanup_table(db, table, cols, table_is_esc=False):
|
850 |
|
|
def esc_name_(name): return esc_name(db, name)
|
851 |
|
|
|
852 |
|
|
if not table_is_esc: check_name(table)
|
853 |
|
|
cols = map(esc_name_, cols)
|
854 |
|
|
|
855 |
|
|
run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
|
856 |
|
|
+' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
|
857 |
|
|
for col in cols))),
|
858 |
|
|
dict(null0='', null1=r'\N'))
|