| 1 |
6461
|
aaronmk
|
#!/bin/bash
|
| 2 |
4395
|
aaronmk
|
# Creates analytical DB
|
| 3 |
7864
|
aaronmk
|
# Usage: self [log=]
|
| 4 |
4395
|
aaronmk
|
|
| 5 |
|
|
selfDir="$(dirname -- "$0")"
|
| 6 |
|
|
|
| 7 |
6459
|
aaronmk
|
. "$selfDir/vegbien_dest"
|
| 8 |
|
|
|
| 9 |
7864
|
aaronmk
|
if test -n "${log=1}"; then # $log defaults to 1
|
| 10 |
|
|
exec >>"$selfDir/../inputs/analytical_db/logs/make_analytical_db.log.sql" 2>&1
|
| 11 |
|
|
fi
|
| 12 |
6047
|
aaronmk
|
|
| 13 |
6054
|
aaronmk
|
(set -x; date)
|
| 14 |
6048
|
aaronmk
|
|
| 15 |
7620
|
aaronmk
|
sleep 5 # wait for tnrs.make to acquire the lock if being run right after import
|
| 16 |
7618
|
aaronmk
|
"$selfDir/waitself" "$selfDir/../inputs/.TNRS/tnrs/tnrs.make"
|
| 17 |
|
|
|
| 18 |
6460
|
aaronmk
|
mk_analytical_table ()
|
| 19 |
|
|
{
|
| 20 |
|
|
local table="$1"
|
| 21 |
6465
|
aaronmk
|
local public_table="\"$public\".$table" analyt_table="analytical_db.$table"
|
| 22 |
6460
|
aaronmk
|
cat <<EOF
|
| 23 |
|
|
-- Create $table
|
| 24 |
6466
|
aaronmk
|
TRUNCATE $public_table;
|
| 25 |
|
|
INSERT INTO $public_table SELECT * FROM ${public_table}_view;
|
| 26 |
7061
|
aaronmk
|
ANALYZE $public_table;
|
| 27 |
6460
|
aaronmk
|
|
| 28 |
6465
|
aaronmk
|
-- Create $analyt_table view pointing to table in $public
|
| 29 |
|
|
DROP VIEW IF EXISTS $analyt_table;
|
| 30 |
|
|
CREATE VIEW $analyt_table AS
|
| 31 |
|
|
SELECT * FROM $public_table;
|
| 32 |
|
|
GRANT SELECT ON TABLE $analyt_table TO bien_read;
|
| 33 |
6460
|
aaronmk
|
EOF
|
| 34 |
|
|
}
|
| 35 |
|
|
|
| 36 |
7345
|
aaronmk
|
((set -x; "$selfDir/psql_verbose_vegbien") <<EOF
|
| 37 |
7031
|
aaronmk
|
GRANT USAGE ON SCHEMA analytical_db TO bien_read;
|
| 38 |
|
|
GRANT USAGE ON SCHEMA analytical_db TO public_;
|
| 39 |
|
|
|
| 40 |
6053
|
aaronmk
|
TRUNCATE geoscrub_input;
|
| 41 |
|
|
INSERT INTO geoscrub_input SELECT * FROM geoscrub_input_view;
|
| 42 |
|
|
|
| 43 |
6042
|
aaronmk
|
SELECT make_family_higher_plant_group();
|
| 44 |
6085
|
aaronmk
|
TRUNCATE threatened_taxonlabel;
|
| 45 |
|
|
INSERT INTO threatened_taxonlabel SELECT * FROM threatened_taxonlabel_view;
|
| 46 |
6042
|
aaronmk
|
|
| 47 |
6895
|
aaronmk
|
$(mk_analytical_table taxon_trait)
|
| 48 |
6460
|
aaronmk
|
$(mk_analytical_table analytical_stem)
|
| 49 |
6868
|
aaronmk
|
$(mk_analytical_table provider_count)
|
| 50 |
7043
|
aaronmk
|
GRANT SELECT ON TABLE analytical_db.provider_count TO public_;
|
| 51 |
6042
|
aaronmk
|
EOF
|
| 52 |
7345
|
aaronmk
|
) || exit
|
| 53 |
6981
|
aaronmk
|
|
| 54 |
8320
|
aaronmk
|
#"$selfDir/export_analytical_db"
|
