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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 8943 over 11 years Aaron Marcuse-Kubitza bin/my2pg: support $sql_ascii mode, where varbi...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 8961 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/table.run: moved table.tsv creation...
  lib 8960 over 11 years Aaron Marcuse-Kubitza lib/util.sh: echo_stdin (): display the echoed ...
  mappings 8235 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Renamed salvias_plots tab...
  planning 8457 over 11 years Aaron Marcuse-Kubitza Moved validation/ under planning/workflow/
  schemas 8944 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb.run: use my2pg'...
  web 8948 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 21 KB 8945 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: to synchronize vegbie...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 299 Bytes 8893 over 11 years Aaron Marcuse-Kubitza renamed lib/runscripts/local.run to lib/local.s...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
8961 05/09/2013 05:01 PM Aaron Marcuse-Kubitza

inputs/GBIF/table.run: moved table.tsv creation to separate table.tsv/make () function

8960 05/09/2013 04:59 PM Aaron Marcuse-Kubitza

lib/util.sh: echo_stdin (): display the echoed input after leading output of the echoed-to command, by using sleep with a small fractional # of seconds

8959 05/09/2013 04:38 PM Aaron Marcuse-Kubitza

*{.sh,run}: put functions on one line where possible (and where they are not expected to expand)

8958 05/09/2013 04:32 PM Aaron Marcuse-Kubitza

lib/local.sh: root_make (): use make () rather than extern make now that make () does not set its own current dir. using make () also automatically enables \$stdout2stderr, which is needed to redirect the echoed make commands.

8957 05/09/2013 04:26 PM Aaron Marcuse-Kubitza

lib/util.sh: extern (): use exec to ensure that the executed command is in fact external, and not a shell builtin or other type of non-function command. this also simplifies the code because any shell function for the command does not need to be unset.

8956 05/09/2013 04:20 PM Aaron Marcuse-Kubitza

lib/util.sh: make (): don't change the directory to $top_dir, because paths used by the caller will instead be relative to the current dir (note that in runscripts, paths are generally not absolute because of canon_rel_path ()). this requires manually specifying $top_dir when running make on a physical (rather than inlined) makefile.

8955 05/09/2013 04:01 PM Aaron Marcuse-Kubitza

lib/util.sh: log_stderr_cmd (): replaced the `|| exit` after the () with `|| return`, for the same reason that this was a problem for extern () (see r8954)

8954 05/09/2013 03:55 PM Aaron Marcuse-Kubitza

lib/util.sh: extern (): replaced the `|| exit` after the () with `|| return`, because `|| exit` strangely does not use $? as its exit status (even though `|| exit $?` works fine). in a shell function, it is actually sufficient, for errexit purposes, to use `|| return`, because the exit status is checked upon return from the function. it is in fact preferable to use return rather than exit, because then the caller can catch the exception using `|| true`.

8953 05/09/2013 03:51 PM Aaron Marcuse-Kubitza

lib/util.sh: extern (): removed the `|| exit` inside the (), because this strangely prevents the exit status from being propagated to the exit status of the ()

8952 05/09/2013 03:44 PM Aaron Marcuse-Kubitza

lib/util.sh: added explicit `set -o errexit` in case caller did not have -e in #! line

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