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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9530 over 11 years Aaron Marcuse-Kubitza bin/tnrs_db: documented how to estimate total r...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9628 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/raw_occurrence_record/run: tables: ...
  lib 9625 over 11 years Aaron Marcuse-Kubitza lib/runscripts/table.run, table.run: use new db...
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 over 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9619 over 11 years Aaron Marcuse-Kubitza schemas/my.cnf: added innodb_file_per_table so ...
  web 9614 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 22.8 KB 9532 over 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9628 05/29/2013 10:10 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: tables: set ENGINE to MyISAM and DEFAULT CHARSET to utf8 to match the other GBIF tables. (note that MyISAM is not the default, but is needed to avoid row sort order problems and other issues with InnoDB.)

9627 05/29/2013 08:09 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: plant_fraction.table/make(): in remaking mode, drop the table first

9626 05/29/2013 08:04 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: plant_fraction.table/make(): only create and populate the table if it doesn't already exist, to avoid clobbering existing data. the noclobber functionality uses new skip_table(), which is the table analog of require_not_exists().

9625 05/29/2013 08:02 PM Aaron Marcuse-Kubitza

lib/runscripts/table.run, table.run: use new db_make.sh

9624 05/29/2013 08:02 PM Aaron Marcuse-Kubitza

added lib/sh/db_make.sh that includes both db.sh and make.sh, and will eventually contain DB-related make commands

9623 05/29/2013 08:00 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: added skip_table(), which prints an already_exists_msg for tables

9622 05/29/2013 07:56 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: already_exists_msg: undid r9621 because the `|| return 0` should actually always be explicitly specified by the caller, to make it clear that the function will be aborted

9621 05/29/2013 07:47 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: already_exists_msg(): added alias for use as an error handler. note that ..._not_exists() functions should continue to use the "already_exists_msg" function instead to preserve the exit status.

9620 05/29/2013 07:40 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added already_exists_msg() and use it instead of manually generating the die() call

9619 05/29/2013 07:15 PM Aaron Marcuse-Kubitza

schemas/my.cnf: added innodb_file_per_table so each InnoDB table will get its own file. this should also allow databases with InnoDB tables to be manually renamed.

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