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6461
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aaronmk
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#!/bin/bash
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4395
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aaronmk
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# Creates analytical DB
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7864
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aaronmk
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# Usage: self [log=]
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4395
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aaronmk
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selfDir="$(dirname -- "$0")"
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6459
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aaronmk
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. "$selfDir/vegbien_dest"
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7864
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aaronmk
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if test -n "${log=1}"; then # $log defaults to 1
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exec >>"$selfDir/../inputs/analytical_db/logs/make_analytical_db.log.sql" 2>&1
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fi
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6047
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aaronmk
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6054
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aaronmk
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(set -x; date)
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| 14 |
6048
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aaronmk
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7620
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aaronmk
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sleep 5 # wait for tnrs.make to acquire the lock if being run right after import
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7618
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aaronmk
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"$selfDir/waitself" "$selfDir/../inputs/.TNRS/tnrs/tnrs.make"
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6460
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aaronmk
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mk_analytical_table ()
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{
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local table="$1"
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6465
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aaronmk
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local public_table="\"$public\".$table" analyt_table="analytical_db.$table"
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6460
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aaronmk
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cat <<EOF
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-- Create $table
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6466
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aaronmk
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TRUNCATE $public_table;
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INSERT INTO $public_table SELECT * FROM ${public_table}_view;
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7061
|
aaronmk
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ANALYZE $public_table;
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| 27 |
6460
|
aaronmk
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6465
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aaronmk
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-- Create $analyt_table view pointing to table in $public
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DROP VIEW IF EXISTS $analyt_table;
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CREATE VIEW $analyt_table AS
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SELECT * FROM $public_table;
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GRANT SELECT ON TABLE $analyt_table TO bien_read;
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6460
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aaronmk
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EOF
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}
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7345
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aaronmk
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((set -x; "$selfDir/psql_verbose_vegbien") <<EOF
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7031
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aaronmk
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GRANT USAGE ON SCHEMA analytical_db TO bien_read;
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GRANT USAGE ON SCHEMA analytical_db TO public_;
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6053
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aaronmk
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TRUNCATE geoscrub_input;
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INSERT INTO geoscrub_input SELECT * FROM geoscrub_input_view;
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6042
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aaronmk
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SELECT make_family_higher_plant_group();
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| 44 |
6085
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aaronmk
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TRUNCATE threatened_taxonlabel;
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INSERT INTO threatened_taxonlabel SELECT * FROM threatened_taxonlabel_view;
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| 46 |
6042
|
aaronmk
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| 47 |
6895
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aaronmk
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$(mk_analytical_table taxon_trait)
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| 48 |
6460
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aaronmk
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$(mk_analytical_table analytical_stem)
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6868
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aaronmk
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$(mk_analytical_table provider_count)
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7043
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aaronmk
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GRANT SELECT ON TABLE analytical_db.provider_count TO public_;
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6042
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aaronmk
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EOF
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| 52 |
7345
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aaronmk
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) || exit
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6981
|
aaronmk
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9915
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aaronmk
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remake=1 "$selfDir"/../run export_
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8320
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aaronmk
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#"$selfDir/export_analytical_db"
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