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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10031 over 11 years Aaron Marcuse-Kubitza bugfix: backups/.rsync_filter.download: need to...
  bin 10077 over 11 years Aaron Marcuse-Kubitza bin/src_map: support custom (or no) new_term_pr...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10105 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: keep $(sortFile) up-to-d...
  lib 10097 over 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/datasrc_dir.run, subdir....
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 10079 over 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: added Relo...
  schemas 10071 over 11 years Aaron Marcuse-Kubitza schemas/util.sql: try_create(): also ignore wro...
  web 10099 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23.2 KB 10093 over 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Maintenance: syncing ~/bie...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10105 06/28/2013 01:53 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: keep $(sortFile) up-to-date: use sort_file_updated=1 flag to indicate that import_order.txt has already been checked, so that recursive invocations of make don't need to recheck it. also use this flag instead of an explicit $(MAKECMDGOALS) list to prevent the $(sortFile) check from being infinite-recursively reinvoked when input.Makefile is read as part of the $(sortFile) check itself.
10104 06/28/2013 01:38 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: keep import_order.txt up-to-date by running `make $(sortFile)` each time make is run. this ensures that new datasources always have import_order.txt populated when make is first run. eventually, $(tables) can be always set to $(allTables) so that this auto-updating can also be used to ensure that new subdirs added by the user always make it into import_order.txt (so that they will be included in the subdirs that get remade, etc.). import_order.txt is primarily for specifying the order of the subdirs, but some datasources also use it to filter out subdirs, so it can't yet be always updated to include the full list of subdirs. however, the filter-out usage should no longer be necessary after the switch to new-style import.
10103 06/28/2013 12:58 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: added $(filter_make), used to filter the output of embedded $(shell make ...) invocations
10102 06/28/2013 11:39 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: $(sortFile): use $(filter-out)->then instead of $(filter)->else for clarity
10101 06/28/2013 11:21 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: added $(sortFile) (import_order.txt) target which adds any missing tables to import_order.txt
10100 06/28/2013 11:03 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: added list_tables to print $(tables) for use in populating import_order.txt
10099 06/28/2013 02:50 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. grouped version control systems into new version control folder.
10098 06/27/2013 09:54 PM Aaron Marcuse-Kubitza

inputs/.NCBI/: added new-style import runscripts, which renamed the staging table columns to VegCore
10097 06/27/2013 04:48 PM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/datasrc_dir.run, subdir.run: need to remove leading . from dir name to get installed schema name, using new dir2schema()
10096 06/27/2013 04:47 PM Aaron Marcuse-Kubitza

lib/runscripts/datasrc_dir.run, subdir.run: use new lib/sh/datasrc.sh, which contains code in common to both datasrc-related dir runscripts

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