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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10031 about 11 years Aaron Marcuse-Kubitza bugfix: backups/.rsync_filter.download: need to...
  bin 10191 almost 11 years Aaron Marcuse-Kubitza bin/map: removed no longer used support for map...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 about 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10196 almost 11 years Aaron Marcuse-Kubitza bugfix: inputs/VASCAN/Taxon/map.csv: added miss...
  lib 10195 almost 11 years Aaron Marcuse-Kubitza lib/sql_io.py: cleanup_table(): added assertion...
  mappings 10173 almost 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: cultivated, oldGr...
  planning 10142 about 11 years Aaron Marcuse-Kubitza planning/workflow/validation/: archived BIEN2 v...
  schemas 10185 almost 11 years Aaron Marcuse-Kubitza schemas/util.sql: added table_nulls_mapped__get...
  web 10175 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.5 KB 10126 about 11 years Aaron Marcuse-Kubitza bugfix: *Makefile: $(asAdmin) invocations of Po...
README.TXT 23.2 KB 10093 about 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Maintenance: syncing ~/bie...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 over 11 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 over 11 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10196 07/09/2013 02:59 PM Aaron Marcuse-Kubitza

bugfix: inputs/VASCAN/Taxon/map.csv: added missing row_num column added by bin/csv2db
10195 07/09/2013 02:50 PM Aaron Marcuse-Kubitza

lib/sql_io.py: cleanup_table(): added assertion that the table exists, so that if it doesn't, the error will occur as part of an assertion rather than as part of the util.table_nulls_mapped__get() call, which might confusingly lead users to believe that this is a bug in util.table_nulls_mapped__get() when in fact the problem is that the table is not installed
10194 07/09/2013 02:30 AM Aaron Marcuse-Kubitza

fix: inputs/import.stats.xls: removed spurious diff comment on total time, which only applied to the previous import
10193 07/09/2013 02:28 AM Aaron Marcuse-Kubitza

inputs/import.stats.xls: reformatted times longer than one day as a # of days instead of hours, for clarity. the days format is chosen automatically when the # hours exceeds one day.
10192 07/09/2013 01:04 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/: added missing ./run, which creates the new-style staging tables with the metadata fields as part of the table. this is needed now that these subdirs use installed staging tables instead of metadata-only map.csvs.
10191 07/09/2013 12:56 AM Aaron Marcuse-Kubitza

bin/map: removed no longer used support for map.csv input column prefixes (expand out the prefixes instead). this used to be used by SpeciesLink to use just one mapping for a single term with multiple DwC namespaces, but was replaced with an explicit, ordered rather than implicit, unordered /_alt-ing together of the terms.
10190 07/08/2013 11:47 PM Aaron Marcuse-Kubitza

bin/map: removed no longer accurate comment that this is case- and punctuation-insensitive, since the case- and punctuation-insensitivity is now instead handled by map.csv preprocessing scripts before the mappings are even provided to bin/map
10189 07/06/2013 07:29 PM Aaron Marcuse-Kubitza

inputs/.herbaria/: switched to new-style import, which renamed the columns to the VegCore names. this is done using the commands at wiki.vegpath.org/2013-06-27_conference_call#To-do-for-Aaron > "run the following for each datasource".
10188 07/06/2013 07:21 PM Aaron Marcuse-Kubitza

lib/sql_io.py: cleanup_table(): don't run the slow ALTER TABLE statement again if the table has already been cleaned up. documented that it is idempotent (and actually was before this change as well).
10187 07/06/2013 07:19 PM Aaron Marcuse-Kubitza

lib/sql_io.py: added table_nulls_mapped__set(), "__get() wrappers around the corresponding util schema functions

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