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6461
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aaronmk
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#!/bin/bash
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4395
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aaronmk
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# Creates analytical DB
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7864
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aaronmk
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# Usage: self [log=]
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4395
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aaronmk
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selfDir="$(dirname -- "$0")"
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6459
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aaronmk
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. "$selfDir/vegbien_dest"
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7864
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aaronmk
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if test -n "${log=1}"; then # $log defaults to 1
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exec >>"$selfDir/../inputs/analytical_db/logs/make_analytical_db.log.sql" 2>&1
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fi
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6047
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aaronmk
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| 13 |
6054
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aaronmk
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(set -x; date)
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| 14 |
6048
|
aaronmk
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| 15 |
7620
|
aaronmk
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sleep 5 # wait for tnrs.make to acquire the lock if being run right after import
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7618
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aaronmk
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"$selfDir/waitself" "$selfDir/../inputs/.TNRS/tnrs/tnrs.make"
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9924
|
aaronmk
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mk_table()
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| 19 |
6460
|
aaronmk
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{
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local table="$1"
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| 21 |
9924
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aaronmk
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local public_table="\"$public\".$table"
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| 22 |
6460
|
aaronmk
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cat <<EOF
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-- Create $table
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6466
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aaronmk
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TRUNCATE $public_table;
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INSERT INTO $public_table SELECT * FROM ${public_table}_view;
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7061
|
aaronmk
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ANALYZE $public_table;
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| 27 |
9924
|
aaronmk
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EOF
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}
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| 29 |
6460
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aaronmk
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| 30 |
7345
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aaronmk
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((set -x; "$selfDir/psql_verbose_vegbien") <<EOF
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14095
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aaronmk
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SELECT iucn_red_list_view_modify();
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| 32 |
14437
|
aaronmk
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SELECT geoscrub_input_view_modify();
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| 33 |
14095
|
aaronmk
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| 34 |
14437
|
aaronmk
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SELECT taxon_trait_view_modify();
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SELECT analytical_stem_view_modify();
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SELECT provider_count_view_modify();
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| 37 |
6042
|
aaronmk
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EOF
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| 38 |
7345
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aaronmk
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) || exit
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| 39 |
6981
|
aaronmk
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| 40 |
10865
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aaronmk
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remake=1 "$selfDir"/../run export_ </dev/null
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| 41 |
8320
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aaronmk
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#"$selfDir/export_analytical_db"
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