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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
26
    else: return repr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
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    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
36
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+strings.ustr(value), cause)
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        self.name = name
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        self.value = value
48
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class ExceptionWithColumns(DbException):
50
    def __init__(self, cols, cause=None):
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        DbException.__init__(self, 'for columns: '+(', '.join(cols)), cause)
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ExceptionWithColumns): pass
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class NullValueException(ExceptionWithColumns): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
67
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##### Warnings
69
70
class DbWarning(UserWarning): pass
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##### Result retrieval
73
74
def col_names(cur): return (col[0] for col in cur.description)
75
76
def rows(cur): return iter(lambda: cur.fetchone(), None)
77
78
def consume_rows(cur):
79
    '''Used to fetch all rows so result will be cached'''
80
    iters.consume_iter(rows(cur))
81
82
def next_row(cur): return rows(cur).next()
83
84
def row(cur):
85
    row_ = next_row(cur)
86
    consume_rows(cur)
87
    return row_
88
89
def next_value(cur): return next_row(cur)[0]
90
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def value(cur): return row(cur)[0]
92
93
def values(cur): return iters.func_iter(lambda: next_value(cur))
94
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def value_or_none(cur):
96
    try: return value(cur)
97
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name).lower()
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def check_name(name):
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    if re.search(r'\W', name) != None: raise NameException('Name "'+name
105
        +'" may contain only alphanumeric characters and _')
106
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def esc_name_by_module(module, name, ignore_case=False):
108
    if module == 'psycopg2':
109
        if ignore_case:
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            # Don't enclose in quotes because this disables case-insensitivity
111
            check_name(name)
112
            return name
113
        else: quote = '"'
114
    elif module == 'MySQLdb': quote = '`'
115
    else: raise NotImplementedError("Can't escape name for "+module+' database')
116
    return quote + name.replace(quote, '') + quote
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def esc_name_by_engine(engine, name, **kw_args):
119
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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def esc_name(db, name, **kw_args):
122
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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def qual_name(db, schema, table):
125
    def esc_name_(name): return esc_name(db, name)
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    table = esc_name_(table)
127
    if schema != None: return esc_name_(schema)+'.'+table
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    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
135
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
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    'PostgreSQL': ('psycopg2', {}),
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}
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DatabaseErrors_set = set([DbException])
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DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
143
    DatabaseErrors_set.add(module.DatabaseError)
144
    global DatabaseErrors
145
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
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    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
156
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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168
    def __getattr__(self, name):
169
        if name == '__dict__': raise Exception('getting __dict__')
170
        if name == 'db': return self._db()
171
        else: raise AttributeError()
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    def __getstate__(self):
174
        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
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        return state
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    def connected(self): return self.__db != None
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    def _db(self):
182
        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
187
            module = __import__(module_name)
188
            _add_module(module)
189
            for orig, new in mappings.iteritems():
190
                try: util.rename_key(db_config, orig, new)
191
                except KeyError: pass
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            # Connect
194
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
198
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
200
                schemas_ = ''.join((esc_name(self, s)+', '
201
                    for s in schemas.split(',')))
202
                run_raw_query(self, "SELECT set_config('search_path', \
203
%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
220
                    return_value = self.inner.execute(query, params)
221
                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
226
                self._cache_result()
227
                raise
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            # Fetch all rows so result will be cached
229
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
233
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
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                try: return self.iter.next()
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                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': return self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
266
            import _mysql
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            return _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
269
            +' database')
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
273
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
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        try:
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            # Get cursor
280
            if cacheable:
281
                query_lookup = _query_lookup(query, params)
282
                try:
283
                    cur = self.query_results[query_lookup]
284
                    used_cache = True
285
                except KeyError: cur = self.DbCursor(self)
286
            else: cur = self.db.cursor()
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            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
293
                elif cacheable: cache_status = 'Cache miss'
294
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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298
        return cur
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300
    def is_cached(self, query, params=None):
301
        return _query_lookup(query, params) in self.query_results
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303
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
306
        self._savepoint += 1
307
        try:
308
            try: return_val = func()
309
            finally:
310
                self._savepoint -= 1
311
                assert self._savepoint >= 0
312
        except:
313
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
314
            raise
315
        else:
316
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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320
    def do_autocommit(self):
321
        '''Autocommits if outside savepoint'''
322
        assert self._savepoint >= 0
323
        if self.autocommit and self._savepoint == 0:
324
            self.log_debug('Autocommiting')
325
            self.db.commit()
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connect = DbConn
328
329 832 aaronmk
##### Querying
330
331 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
333 1894 aaronmk
    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
336
    module = util.root_module(db.db)
337
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
338
    else: raise NotImplementedError("Can't mogrify query for "+module+
339
        ' database')
340
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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345 1894 aaronmk
def run_query(db, query, params=None, recover=None, cacheable=False):
346 830 aaronmk
    if recover == None: recover = False
347
348 2148 aaronmk
    try:
349
        def run(): return run_raw_query(db, query, params, cacheable)
350
        if recover and not db.is_cached(query, params):
351
            return with_savepoint(db, run)
352
        else: return run() # don't need savepoint if cached
353
    except Exception, e:
354
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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357 2148 aaronmk
        match = re.search(r'duplicate key value violates unique constraint '
358
            r'"((_?[^\W_]+)_[^"]+)"', msg)
359
        if match:
360
            constraint, table = match.groups()
361
            try: cols = index_cols(db, table, constraint)
362
            except NotImplementedError: raise e
363
            else: raise DuplicateKeyException(cols, e)
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365 2148 aaronmk
        match = re.search(r'null value in column "(\w+)" violates not-null '
366 2239 aaronmk
            r'constraint', msg)
367 2148 aaronmk
        if match: raise NullValueException([match.group(1)], e)
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369 2247 aaronmk
        match = re.search(r'invalid input (?:syntax|value)\b.*: "(.+)"\n'
370 2242 aaronmk
            r'(?:(?s).*)\bfunction "(\w+)".*\bat assignment', msg)
371 2240 aaronmk
        if match:
372 2247 aaronmk
            raise FunctionValueException(match.group(2),
373
                strings.to_unicode(match.group(1)), e)
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375 2148 aaronmk
        match = re.search(r'relation "(\w+)" already exists', msg)
376
        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+)" already exists', msg)
379
        if match: raise DuplicateFunctionException(match.group(1), e)
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381 2148 aaronmk
        raise # no specific exception raised
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##### Basic queries
384
385 2153 aaronmk
def next_version(name):
386
    '''Prepends the version # so it won't be removed if the name is truncated'''
387 2163 aaronmk
    version = 1 # first existing name was version 0
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    match = re.match(r'^v(\d+)_(.*)$', name)
389
    if match:
390
        version = int(match.group(1))+1
391
        name = match.group(2)
392
    return 'v'+str(version)+'_'+name
393
394 2151 aaronmk
def run_query_into(db, query, params, into_ref=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
396
    For params, see run_query().
397
    '''
398 2151 aaronmk
    if into_ref == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        check_name(into_ref[0])
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        kw_args['recover'] = True
402
        while True:
403
            try:
404 2194 aaronmk
                create_query = 'CREATE'
405
                if not db.debug: create_query += ' TEMP'
406
                create_query += ' TABLE '+into_ref[0]+' AS '+query
407
408
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
410
            except DuplicateTableException, e:
411
                into_ref[0] = next_version(into_ref[0])
412
                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
415
416 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
417
418 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
419 2227 aaronmk
    start=None, order_by=order_by_pkey, table_is_esc=False, default_table=None):
420 1981 aaronmk
    '''
421 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
422 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
423 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: dict(compare_left_side=compare_right_side):
425
        * compare_left_side: Code|str (for col name)
426
        * compare_right_side: ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
428
        use all columns
429 1981 aaronmk
    @param table_is_esc Whether the table name has already been escaped
430 2054 aaronmk
    @return tuple(query, params)
431 1981 aaronmk
    '''
432 2060 aaronmk
    def esc_name_(name): return esc_name(db, name)
433 2058 aaronmk
434 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
435 2141 aaronmk
    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = tables.pop(0) # first table is separate
437
438 1135 aaronmk
    if conds == None: conds = {}
439 135 aaronmk
    assert limit == None or type(limit) == int
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    assert start == None or type(start) == int
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    if order_by is order_by_pkey:
442 2121 aaronmk
        order_by = pkey(db, table0, recover=True, table_is_esc=table_is_esc)
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    table0 = sql_gen.table2sql_gen(table0, table_is_esc)
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445 2056 aaronmk
    params = []
446
447 2227 aaronmk
    def parse_col(field):
448 2056 aaronmk
        '''Parses fields'''
449 2227 aaronmk
        return sql_gen.value2sql_gen(field, default_table, table_is_esc,
450
            assume_col=True).to_str(db)
451 11 aaronmk
    def cond(entry):
452 2056 aaronmk
        '''Parses conditions'''
453 2217 aaronmk
        left, right = entry
454 2282 aaronmk
        return sql_gen.as_ValueCond(right).to_str(db, sql_gen.as_Col(left))
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456 2200 aaronmk
    query = 'SELECT'
457
458
    # DISTINCT ON columns
459 2233 aaronmk
    if distinct_on != []:
460 2200 aaronmk
        query += ' DISTINCT'
461 2254 aaronmk
        if distinct_on is not distinct_on_all:
462 2200 aaronmk
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
463
464
    # Columns
465
    query += ' '
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    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
468 2200 aaronmk
469
    # Main table
470 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
471 865 aaronmk
472 2122 aaronmk
    # Add joins
473 2271 aaronmk
    left_table = table0
474 2263 aaronmk
    for join_ in tables:
475 2277 aaronmk
        # Parse special values
476 2263 aaronmk
        table = join_.table
477 2267 aaronmk
        if join_.type_ is sql_gen.filter_out:
478 2277 aaronmk
            conds[sql_gen.Col(pkey(db, table), table)] = None # filter no match
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480 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
481 2122 aaronmk
482
        left_table = table
483
484 865 aaronmk
    missing = True
485 89 aaronmk
    if conds != {}:
486 2122 aaronmk
        query += ' WHERE '+(' AND '.join(map(cond, conds.iteritems())))
487 2056 aaronmk
        params += conds.values()
488 865 aaronmk
        missing = False
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    if order_by != None:
490
        query += ' ORDER BY '+sql_gen.col2sql_gen(order_by, table0,
491
            table_is_esc).to_str(db)
492 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
493
    if start != None:
494
        if start != 0: query += ' OFFSET '+str(start)
495
        missing = False
496
    if missing: warnings.warn(DbWarning(
497
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
498
499 2056 aaronmk
    return (query, params)
500 11 aaronmk
501 2054 aaronmk
def select(db, *args, **kw_args):
502
    '''For params, see mk_select() and run_query()'''
503
    recover = kw_args.pop('recover', None)
504
    cacheable = kw_args.pop('cacheable', True)
505
506
    query, params = mk_select(db, *args, **kw_args)
507
    return run_query(db, query, params, recover, cacheable)
508
509 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
510 2070 aaronmk
    returning=None, embeddable=False, table_is_esc=False):
511 1960 aaronmk
    '''
512
    @param returning str|None An inserted column (such as pkey) to return
513 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
514 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
515
        query will be fully cached, not just if it raises an exception.
516 1960 aaronmk
    @param table_is_esc Whether the table name has already been escaped
517
    '''
518 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
519
    if cols == []: cols = None # no cols (all defaults) = unknown col names
520 2274 aaronmk
    table = sql_gen.table2sql_gen(table, table_is_esc).to_str(db)
521 2063 aaronmk
522
    # Build query
523
    query = 'INSERT INTO '+table
524
    if cols != None:
525
        map(check_name, cols)
526
        query += ' ('+', '.join(cols)+')'
527
    query += ' '+select_query
528
529
    if returning != None:
530
        check_name(returning)
531
        query += ' RETURNING '+returning
532
533 2070 aaronmk
    if embeddable:
534
        # Create function
535 2189 aaronmk
        function_name = '_'.join(map(clean_name, ['insert', table] + cols))
536 2070 aaronmk
        return_type = 'SETOF '+table+'.'+returning+'%TYPE'
537 2189 aaronmk
        while True:
538
            try:
539 2194 aaronmk
                function = function_name
540
                if not db.debug: function = 'pg_temp.'+function
541
542 2189 aaronmk
                function_query = '''\
543
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
544 2070 aaronmk
    LANGUAGE sql
545
    AS $$'''+mogrify(db, query, params)+''';$$;
546
'''
547 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
548
                break # this version was successful
549
            except DuplicateFunctionException, e:
550
                function_name = next_version(function_name)
551
                # try again with next version of name
552 2070 aaronmk
553
        # Return query that uses function
554 2271 aaronmk
        return mk_select(db, sql_gen.CustomCode(function+'() AS f ('+returning
555
            +')'), start=0, order_by=None) # AS clause requires function alias
556 2070 aaronmk
557 2066 aaronmk
    return (query, params)
558
559
def insert_select(db, *args, **kw_args):
560 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
561 2152 aaronmk
    @param into_ref List with name of temp table to place RETURNING values in
562 2072 aaronmk
    '''
563 2151 aaronmk
    into_ref = kw_args.pop('into_ref', None)
564
    if into_ref != None: kw_args['embeddable'] = True
565 2066 aaronmk
    recover = kw_args.pop('recover', None)
566
    cacheable = kw_args.pop('cacheable', True)
567
568
    query, params = mk_insert_select(db, *args, **kw_args)
569 2153 aaronmk
    return run_query_into(db, query, params, into_ref, recover=recover,
570
        cacheable=cacheable)
571 2063 aaronmk
572 2066 aaronmk
default = object() # tells insert() to use the default value for a column
573
574 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
575 2085 aaronmk
    '''For params, see insert_select()'''
576 1960 aaronmk
    if lists.is_seq(row): cols = None
577
    else:
578
        cols = row.keys()
579
        row = row.values()
580
    row = list(row) # ensure that "!= []" works
581
582 1961 aaronmk
    # Check for special values
583
    labels = []
584
    values = []
585
    for value in row:
586 2254 aaronmk
        if value is default: labels.append('DEFAULT')
587 1961 aaronmk
        else:
588
            labels.append('%s')
589
            values.append(value)
590
591
    # Build query
592 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
593
    else: query = None
594 1554 aaronmk
595 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
596 11 aaronmk
597 135 aaronmk
def last_insert_id(db):
598 1849 aaronmk
    module = util.root_module(db.db)
599 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
600
    elif module == 'MySQLdb': return db.insert_id()
601
    else: return None
602 13 aaronmk
603 1968 aaronmk
def truncate(db, table, schema='public'):
604
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
605 832 aaronmk
606
##### Database structure queries
607
608 2084 aaronmk
def pkey(db, table, recover=None, table_is_esc=False):
609 832 aaronmk
    '''Assumed to be first column in table'''
610 2120 aaronmk
    return col_names(select(db, table, limit=0, order_by=None, recover=recover,
611 2084 aaronmk
        table_is_esc=table_is_esc)).next()
612 832 aaronmk
613 853 aaronmk
def index_cols(db, table, index):
614
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
615
    automatically created. When you don't know whether something is a UNIQUE
616
    constraint or a UNIQUE index, use this function.'''
617
    check_name(table)
618
    check_name(index)
619 1909 aaronmk
    module = util.root_module(db.db)
620
    if module == 'psycopg2':
621
        return list(values(run_query(db, '''\
622 853 aaronmk
SELECT attname
623 866 aaronmk
FROM
624
(
625
        SELECT attnum, attname
626
        FROM pg_index
627
        JOIN pg_class index ON index.oid = indexrelid
628
        JOIN pg_class table_ ON table_.oid = indrelid
629
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
630
        WHERE
631
            table_.relname = %(table)s
632
            AND index.relname = %(index)s
633
    UNION
634
        SELECT attnum, attname
635
        FROM
636
        (
637
            SELECT
638
                indrelid
639
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
640
                    AS indkey
641
            FROM pg_index
642
            JOIN pg_class index ON index.oid = indexrelid
643
            JOIN pg_class table_ ON table_.oid = indrelid
644
            WHERE
645
                table_.relname = %(table)s
646
                AND index.relname = %(index)s
647
        ) s
648
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
649
) s
650 853 aaronmk
ORDER BY attnum
651
''',
652 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
653
    else: raise NotImplementedError("Can't list index columns for "+module+
654
        ' database')
655 853 aaronmk
656 464 aaronmk
def constraint_cols(db, table, constraint):
657
    check_name(table)
658
    check_name(constraint)
659 1849 aaronmk
    module = util.root_module(db.db)
660 464 aaronmk
    if module == 'psycopg2':
661
        return list(values(run_query(db, '''\
662
SELECT attname
663
FROM pg_constraint
664
JOIN pg_class ON pg_class.oid = conrelid
665
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
666
WHERE
667
    relname = %(table)s
668
    AND conname = %(constraint)s
669
ORDER BY attnum
670
''',
671
            {'table': table, 'constraint': constraint})))
672
    else: raise NotImplementedError("Can't list constraint columns for "+module+
673
        ' database')
674
675 2096 aaronmk
row_num_col = '_row_num'
676
677 2086 aaronmk
def add_row_num(db, table):
678 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
679
    be the primary key.'''
680 2086 aaronmk
    check_name(table)
681 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
682 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
683 2086 aaronmk
684 1968 aaronmk
def tables(db, schema='public', table_like='%'):
685 1849 aaronmk
    module = util.root_module(db.db)
686 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
687 832 aaronmk
    if module == 'psycopg2':
688 1968 aaronmk
        return values(run_query(db, '''\
689
SELECT tablename
690
FROM pg_tables
691
WHERE
692
    schemaname = %(schema)s
693
    AND tablename LIKE %(table_like)s
694
ORDER BY tablename
695
''',
696
            params, cacheable=True))
697
    elif module == 'MySQLdb':
698
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
699
            cacheable=True))
700 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
701 830 aaronmk
702 833 aaronmk
##### Database management
703
704 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
705
    '''For kw_args, see tables()'''
706
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
707 833 aaronmk
708 832 aaronmk
##### Heuristic queries
709
710 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
711 1554 aaronmk
    '''Recovers from errors.
712 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
713
    '''
714 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
715
716 471 aaronmk
    try:
717 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
718 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
719
            row_ct_ref[0] += cur.rowcount
720
        return value(cur)
721 471 aaronmk
    except DuplicateKeyException, e:
722 2104 aaronmk
        return value(select(db, table, [pkey_],
723 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
724 471 aaronmk
725 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
726 830 aaronmk
    '''Recovers from errors'''
727 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
728 14 aaronmk
    except StopIteration:
729 40 aaronmk
        if not create: raise
730 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
731 2078 aaronmk
732 2134 aaronmk
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
733 2279 aaronmk
    row_ct_ref=None):
734 2078 aaronmk
    '''Recovers from errors.
735
    Only works under PostgreSQL (uses INSERT RETURNING).
736 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
737
        tables to join with it using the main input table's pkey
738 2279 aaronmk
    @return sql_gen.Col Where the pkeys (from INSERT RETURNING) are made
739 2078 aaronmk
        available
740
    '''
741 2251 aaronmk
    temp_prefix = clean_name(out_table)
742
    pkeys_ref = [temp_prefix+'_pkeys']
743 2131 aaronmk
744 2132 aaronmk
    # Join together input tables
745 2131 aaronmk
    in_tables = in_tables[:] # don't modify input!
746
    in_tables0 = in_tables.pop(0) # first table is separate
747 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
748
    in_pkey_col = sql_gen.col2sql_gen(in_pkey, in_tables0)
749 2278 aaronmk
    insert_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_using})
750
        for v in in_tables]
751 2131 aaronmk
752 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
753
    out_pkey_col = sql_gen.col2sql_gen(out_pkey, out_table)
754 2142 aaronmk
755 2236 aaronmk
    pkeys = [in_pkey, out_pkey]
756
    pkeys_cols = [in_pkey_col, out_pkey_col]
757
758 2201 aaronmk
    pkeys_table_exists_ref = [False]
759
    def run_query_into_pkeys(query, params):
760
        if pkeys_table_exists_ref[0]:
761 2236 aaronmk
            insert_select(db, pkeys_ref[0], pkeys, query, params)
762 2201 aaronmk
        else:
763
            run_query_into(db, query, params, into_ref=pkeys_ref)
764
            pkeys_table_exists_ref[0] = True
765
766 2208 aaronmk
    conds = {}
767 2233 aaronmk
    distinct_on = []
768 2207 aaronmk
    def mk_main_select(cols):
769 2208 aaronmk
        return mk_select(db, insert_joins, cols, conds, distinct_on,
770 2279 aaronmk
            order_by=None, limit=limit, start=start, default_table=in_tables0)
771 2132 aaronmk
772 2245 aaronmk
    def log_ignore(in_col, value):
773
        db.log_debug('Ignoring rows with '+in_col+' = '+value)
774
775 2206 aaronmk
    # Do inserts and selects
776 2257 aaronmk
    join_cols = {}
777
    filter_join_added = False
778 2251 aaronmk
    out_pkeys_ref = [temp_prefix+'_out_pkeys']
779 2252 aaronmk
    in_pkeys_ref = [temp_prefix+'_in_pkeys']
780 2206 aaronmk
    while True:
781
        try:
782 2257 aaronmk
            if join_cols != {}:
783 2278 aaronmk
                select_joins = insert_joins+[sql_gen.Join(out_table, join_cols)]
784 2257 aaronmk
                db.log_debug('Getting pkeys of already existing rows')
785
                run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols,
786 2279 aaronmk
                    order_by=None, start=0))
787 2257 aaronmk
788
                # Prepare to insert new rows
789
                input_join_cols = join_cols.values()
790
                distinct_on = filter(util.is_str, input_join_cols)
791
                if not filter_join_added:
792 2267 aaronmk
                    insert_joins.append(sql_gen.Join(pkeys_ref[0],
793
                        {in_pkey: in_pkey}, sql_gen.filter_out))
794 2257 aaronmk
                    filter_join_added = True
795
796 2253 aaronmk
            db.log_debug('Inserting new rows')
797 2206 aaronmk
            cur = insert_select(db, out_table, mapping.keys(),
798 2207 aaronmk
                *mk_main_select(mapping.values()), returning=out_pkey,
799 2279 aaronmk
                into_ref=out_pkeys_ref, recover=True)
800 2206 aaronmk
            if row_ct_ref != None and cur.rowcount >= 0:
801
                row_ct_ref[0] += cur.rowcount
802
                add_row_num(db, out_pkeys_ref[0]) # for joining with input pkeys
803
804 2253 aaronmk
            db.log_debug('Getting input pkeys corresponding to rows in insert')
805 2207 aaronmk
            run_query_into(db, *mk_main_select([in_pkey]),
806
                into_ref=in_pkeys_ref)
807 2206 aaronmk
            add_row_num(db, in_pkeys_ref[0]) # for joining with output pkeys
808
809 2253 aaronmk
            db.log_debug('Joining together output and input pkeys')
810 2206 aaronmk
            run_query_into_pkeys(*mk_select(db, [in_pkeys_ref[0],
811 2280 aaronmk
                sql_gen.Join(out_pkeys_ref[0],
812
                {row_num_col: sql_gen.join_using})], pkeys, start=0))
813 2206 aaronmk
814
            break # insert successful
815
        except DuplicateKeyException, e:
816 2258 aaronmk
            old_join_cols = join_cols.copy()
817 2257 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
818 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
819 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
820 2206 aaronmk
            # rerun loop with additional constraints
821 2230 aaronmk
        except NullValueException, e:
822
            out_col, = e.cols
823
            try: in_col = mapping[out_col]
824
            except KeyError: # no mapping for missing col, so every row invalid
825 2245 aaronmk
                db.log_debug('Missing mapping for '+out_col)
826 2230 aaronmk
                run_query_into_pkeys(*mk_select(db, insert_joins,
827 2236 aaronmk
                    [in_pkey_col, sql_gen.NamedCode(out_pkey, None)],
828 2279 aaronmk
                    order_by=None, start=0))
829 2230 aaronmk
                break
830
            else:
831 2245 aaronmk
                log_ignore(in_col, 'NULL')
832 2230 aaronmk
                conds[in_col] = sql_gen.CompareCond(None, '!=')
833
                # rerun loop with additional constraints
834 2243 aaronmk
        except FunctionValueException, e:
835
            assert e.name == sql_gen.unescape_table(out_table)
836
            out_col = 'value' # assume function param was named "value"
837
            in_col = mapping[out_col]
838 2245 aaronmk
            value = e.value
839
            log_ignore(in_col, value)
840
            conds[in_col] = sql_gen.CompareCond(value, '!=')
841 2243 aaronmk
            # rerun loop with additional constraints
842 2132 aaronmk
843 2268 aaronmk
    return sql_gen.Col(out_pkey, pkeys_ref[0])
844 2115 aaronmk
845
##### Data cleanup
846
847
def cleanup_table(db, table, cols, table_is_esc=False):
848
    def esc_name_(name): return esc_name(db, name)
849
850
    if not table_is_esc: check_name(table)
851
    cols = map(esc_name_, cols)
852
853
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
854
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
855
            for col in cols))),
856
        dict(null0='', null1=r'\N'))