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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
26
    else: return repr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
35 14 aaronmk
        if cur != None: _add_cursor_info(self, cur)
36
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+strings.ustr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated constraint '+name+ ' on columns: '
52
            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
67
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class EmptyRowException(DbException): pass
69
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##### Warnings
71
72
class DbWarning(UserWarning): pass
73
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##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
91
def next_value(cur): return next_row(cur)[0]
92
93
def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name).lower()
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def check_name(name):
106
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
108
109
def esc_name_by_module(module, name, ignore_case=False):
110
    if module == 'psycopg2':
111
        if ignore_case:
112
            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
115
        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
119
120
def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
122
123
def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
125
126
def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
137
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
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DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
146
    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
158
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
160
        self.serializable = serializable
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        self.autocommit = autocommit
162
        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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170
    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
172
        if name == 'db': return self._db()
173
        else: raise AttributeError()
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    def __getstate__(self):
176
        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
179
        return state
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    def connected(self): return self.__db != None
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    def _db(self):
184
        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
189
            module = __import__(module_name)
190
            _add_module(module)
191
            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
194
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            # Connect
196
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
200
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
202
                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
204
                run_raw_query(self, "SELECT set_config('search_path', \
205
%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
228
                self._cache_result()
229
                raise
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            # Fetch all rows so result will be cached
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            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
235
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
261
                try: return self.iter.next()
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                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': return self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
268
            import _mysql
269
            return _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
275
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
280
        try:
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            # Get cursor
282
            if cacheable:
283
                query_lookup = _query_lookup(query, params)
284
                try:
285
                    cur = self.query_results[query_lookup]
286
                    used_cache = True
287
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
295
                elif cacheable: cache_status = 'Cache miss'
296
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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300
        return cur
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302
    def is_cached(self, query, params=None):
303
        return _query_lookup(query, params) in self.query_results
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305
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
308
        self._savepoint += 1
309
        try:
310
            try: return_val = func()
311
            finally:
312
                self._savepoint -= 1
313
                assert self._savepoint >= 0
314
        except:
315
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
316
            raise
317
        else:
318
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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322
    def do_autocommit(self):
323
        '''Autocommits if outside savepoint'''
324
        assert self._savepoint >= 0
325
        if self.autocommit and self._savepoint == 0:
326
            self.log_debug('Autocommiting')
327
            self.db.commit()
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connect = DbConn
330
331 832 aaronmk
##### Querying
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333 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
335 1894 aaronmk
    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
338
    module = util.root_module(db.db)
339
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
340
    else: raise NotImplementedError("Can't mogrify query for "+module+
341
        ' database')
342
343 832 aaronmk
##### Recoverable querying
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345 2139 aaronmk
def with_savepoint(db, func): return db.with_savepoint(func)
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347 1894 aaronmk
def run_query(db, query, params=None, recover=None, cacheable=False):
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    if recover == None: recover = False
349
350 2148 aaronmk
    try:
351
        def run(): return run_raw_query(db, query, params, cacheable)
352
        if recover and not db.is_cached(query, params):
353
            return with_savepoint(db, run)
354
        else: return run() # don't need savepoint if cached
355
    except Exception, e:
356
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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359 2148 aaronmk
        match = re.search(r'duplicate key value violates unique constraint '
360
            r'"((_?[^\W_]+)_[^"]+)"', msg)
361
        if match:
362
            constraint, table = match.groups()
363
            try: cols = index_cols(db, table, constraint)
364
            except NotImplementedError: raise e
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            else: raise DuplicateKeyException(constraint, cols, e)
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367 2148 aaronmk
        match = re.search(r'null value in column "(\w+)" violates not-null '
368 2239 aaronmk
            r'constraint', msg)
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        if match: raise NullValueException('', [match.group(1)], e)
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        match = re.search(r'invalid input (?:syntax|value)\b.*: "(.+)"\n'
372 2242 aaronmk
            r'(?:(?s).*)\bfunction "(\w+)".*\bat assignment', msg)
373 2240 aaronmk
        if match:
374 2247 aaronmk
            raise FunctionValueException(match.group(2),
375
                strings.to_unicode(match.group(1)), e)
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377 2148 aaronmk
        match = re.search(r'relation "(\w+)" already exists', msg)
378
        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+)" already exists', msg)
381
        if match: raise DuplicateFunctionException(match.group(1), e)
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383 2148 aaronmk
        raise # no specific exception raised
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385 832 aaronmk
##### Basic queries
386
387 2153 aaronmk
def next_version(name):
388
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
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    match = re.match(r'^v(\d+)_(.*)$', name)
391
    if match:
392
        version = int(match.group(1))+1
393
        name = match.group(2)
394
    return 'v'+str(version)+'_'+name
395
396 2151 aaronmk
def run_query_into(db, query, params, into_ref=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
398
    For params, see run_query().
399
    '''
400 2151 aaronmk
    if into_ref == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        kw_args['recover'] = True
403
        while True:
404
            try:
405 2194 aaronmk
                create_query = 'CREATE'
406
                if not db.debug: create_query += ' TEMP'
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                into = sql_gen.as_Table(into_ref[0]).to_str(db)
408
                create_query += ' TABLE '+into+' AS '+query
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410
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
412
            except DuplicateTableException, e:
413
                into_ref[0] = next_version(into_ref[0])
414
                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
417
418 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
419
420 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
421 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
422 1981 aaronmk
    '''
423 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
424 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
425 1981 aaronmk
    @param fields Use None to select all fields in the table
426 2218 aaronmk
    @param conds WHERE conditions: dict(compare_left_side=compare_right_side):
427
        * compare_left_side: Code|str (for col name)
428
        * compare_right_side: ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
430
        use all columns
431 2054 aaronmk
    @return tuple(query, params)
432 1981 aaronmk
    '''
433 2315 aaronmk
    # Parse tables param
434 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
435 2141 aaronmk
    tables = list(tables) # don't modify input! (list() copies input)
436 2315 aaronmk
    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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438 2315 aaronmk
    # Parse other params
439 1135 aaronmk
    if conds == None: conds = {}
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    assert limit == None or type(limit) == int
441 865 aaronmk
    assert start == None or type(start) == int
442 2315 aaronmk
    if order_by is order_by_pkey:
443
        if distinct_on != []: order_by = None
444
        else: order_by = pkey(db, table0, recover=True)
445 865 aaronmk
446 2315 aaronmk
    query = 'SELECT'
447 2056 aaronmk
448 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
449 2056 aaronmk
450 2200 aaronmk
    # DISTINCT ON columns
451 2233 aaronmk
    if distinct_on != []:
452 2200 aaronmk
        query += ' DISTINCT'
453 2254 aaronmk
        if distinct_on is not distinct_on_all:
454 2200 aaronmk
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
455
456
    # Columns
457
    query += ' '
458 1135 aaronmk
    if fields == None: query += '*'
459 2056 aaronmk
    else: query += ', '.join(map(parse_col, fields))
460 2200 aaronmk
461
    # Main table
462 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
463 865 aaronmk
464 2122 aaronmk
    # Add joins
465 2271 aaronmk
    left_table = table0
466 2263 aaronmk
    for join_ in tables:
467 2277 aaronmk
        # Parse special values
468 2263 aaronmk
        table = join_.table
469 2267 aaronmk
        if join_.type_ is sql_gen.filter_out:
470 2277 aaronmk
            conds[sql_gen.Col(pkey(db, table), table)] = None # filter no match
471 2238 aaronmk
472 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
473 2122 aaronmk
474
        left_table = table
475
476 865 aaronmk
    missing = True
477 89 aaronmk
    if conds != {}:
478 2284 aaronmk
        query += ' WHERE '+(' AND '.join((sql_gen.as_ValueCond(r).to_str(db, l)
479
            for l, r in conds.iteritems())))
480 865 aaronmk
        missing = False
481 2227 aaronmk
    if order_by != None:
482 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
483 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
484
    if start != None:
485
        if start != 0: query += ' OFFSET '+str(start)
486
        missing = False
487
    if missing: warnings.warn(DbWarning(
488
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
489
490 2315 aaronmk
    return (query, [])
491 11 aaronmk
492 2054 aaronmk
def select(db, *args, **kw_args):
493
    '''For params, see mk_select() and run_query()'''
494
    recover = kw_args.pop('recover', None)
495
    cacheable = kw_args.pop('cacheable', True)
496
497
    query, params = mk_select(db, *args, **kw_args)
498
    return run_query(db, query, params, recover, cacheable)
499
500 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
501 2292 aaronmk
    returning=None, embeddable=False):
502 1960 aaronmk
    '''
503
    @param returning str|None An inserted column (such as pkey) to return
504 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
505 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
506
        query will be fully cached, not just if it raises an exception.
507 1960 aaronmk
    '''
508 2318 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
509
    if cols == []: cols = None # no cols (all defaults) = unknown col names
510
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
511 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
512
513
    # Build query
514
    query = 'INSERT INTO '+table
515 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
516 2063 aaronmk
    query += ' '+select_query
517
518
    if returning != None:
519 2321 aaronmk
        query += ' RETURNING '+sql_gen.as_Col(returning).to_str(db)
520 2063 aaronmk
521 2070 aaronmk
    if embeddable:
522
        # Create function
523 2189 aaronmk
        function_name = '_'.join(map(clean_name, ['insert', table] + cols))
524 2070 aaronmk
        return_type = 'SETOF '+table+'.'+returning+'%TYPE'
525 2189 aaronmk
        while True:
526
            try:
527 2194 aaronmk
                function = function_name
528
                if not db.debug: function = 'pg_temp.'+function
529
530 2189 aaronmk
                function_query = '''\
531
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
532 2070 aaronmk
    LANGUAGE sql
533
    AS $$'''+mogrify(db, query, params)+''';$$;
534
'''
535 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
536
                break # this version was successful
537
            except DuplicateFunctionException, e:
538
                function_name = next_version(function_name)
539
                # try again with next version of name
540 2070 aaronmk
541
        # Return query that uses function
542 2271 aaronmk
        return mk_select(db, sql_gen.CustomCode(function+'() AS f ('+returning
543
            +')'), start=0, order_by=None) # AS clause requires function alias
544 2070 aaronmk
545 2066 aaronmk
    return (query, params)
546
547
def insert_select(db, *args, **kw_args):
548 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
549 2152 aaronmk
    @param into_ref List with name of temp table to place RETURNING values in
550 2072 aaronmk
    '''
551 2151 aaronmk
    into_ref = kw_args.pop('into_ref', None)
552
    if into_ref != None: kw_args['embeddable'] = True
553 2066 aaronmk
    recover = kw_args.pop('recover', None)
554
    cacheable = kw_args.pop('cacheable', True)
555
556
    query, params = mk_insert_select(db, *args, **kw_args)
557 2153 aaronmk
    return run_query_into(db, query, params, into_ref, recover=recover,
558
        cacheable=cacheable)
559 2063 aaronmk
560 2066 aaronmk
default = object() # tells insert() to use the default value for a column
561
562 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
563 2085 aaronmk
    '''For params, see insert_select()'''
564 1960 aaronmk
    if lists.is_seq(row): cols = None
565
    else:
566
        cols = row.keys()
567
        row = row.values()
568
    row = list(row) # ensure that "!= []" works
569
570 1961 aaronmk
    # Check for special values
571
    labels = []
572
    values = []
573
    for value in row:
574 2254 aaronmk
        if value is default: labels.append('DEFAULT')
575 1961 aaronmk
        else:
576
            labels.append('%s')
577
            values.append(value)
578
579
    # Build query
580 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
581
    else: query = None
582 1554 aaronmk
583 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
584 11 aaronmk
585 135 aaronmk
def last_insert_id(db):
586 1849 aaronmk
    module = util.root_module(db.db)
587 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
588
    elif module == 'MySQLdb': return db.insert_id()
589
    else: return None
590 13 aaronmk
591 1968 aaronmk
def truncate(db, table, schema='public'):
592
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
593 832 aaronmk
594
##### Database structure queries
595
596 2291 aaronmk
def pkey(db, table, recover=None):
597 832 aaronmk
    '''Assumed to be first column in table'''
598 2291 aaronmk
    return col_names(select(db, table, limit=0, order_by=None,
599
        recover=recover)).next()
600 832 aaronmk
601 853 aaronmk
def index_cols(db, table, index):
602
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
603
    automatically created. When you don't know whether something is a UNIQUE
604
    constraint or a UNIQUE index, use this function.'''
605 1909 aaronmk
    module = util.root_module(db.db)
606
    if module == 'psycopg2':
607
        return list(values(run_query(db, '''\
608 853 aaronmk
SELECT attname
609 866 aaronmk
FROM
610
(
611
        SELECT attnum, attname
612
        FROM pg_index
613
        JOIN pg_class index ON index.oid = indexrelid
614
        JOIN pg_class table_ ON table_.oid = indrelid
615
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
616
        WHERE
617
            table_.relname = %(table)s
618
            AND index.relname = %(index)s
619
    UNION
620
        SELECT attnum, attname
621
        FROM
622
        (
623
            SELECT
624
                indrelid
625
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
626
                    AS indkey
627
            FROM pg_index
628
            JOIN pg_class index ON index.oid = indexrelid
629
            JOIN pg_class table_ ON table_.oid = indrelid
630
            WHERE
631
                table_.relname = %(table)s
632
                AND index.relname = %(index)s
633
        ) s
634
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
635
) s
636 853 aaronmk
ORDER BY attnum
637
''',
638 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
639
    else: raise NotImplementedError("Can't list index columns for "+module+
640
        ' database')
641 853 aaronmk
642 464 aaronmk
def constraint_cols(db, table, constraint):
643 1849 aaronmk
    module = util.root_module(db.db)
644 464 aaronmk
    if module == 'psycopg2':
645
        return list(values(run_query(db, '''\
646
SELECT attname
647
FROM pg_constraint
648
JOIN pg_class ON pg_class.oid = conrelid
649
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
650
WHERE
651
    relname = %(table)s
652
    AND conname = %(constraint)s
653
ORDER BY attnum
654
''',
655
            {'table': table, 'constraint': constraint})))
656
    else: raise NotImplementedError("Can't list constraint columns for "+module+
657
        ' database')
658
659 2096 aaronmk
row_num_col = '_row_num'
660
661 2086 aaronmk
def add_row_num(db, table):
662 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
663
    be the primary key.'''
664 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
665 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
666 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
667 2086 aaronmk
668 1968 aaronmk
def tables(db, schema='public', table_like='%'):
669 1849 aaronmk
    module = util.root_module(db.db)
670 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
671 832 aaronmk
    if module == 'psycopg2':
672 1968 aaronmk
        return values(run_query(db, '''\
673
SELECT tablename
674
FROM pg_tables
675
WHERE
676
    schemaname = %(schema)s
677
    AND tablename LIKE %(table_like)s
678
ORDER BY tablename
679
''',
680
            params, cacheable=True))
681
    elif module == 'MySQLdb':
682
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
683
            cacheable=True))
684 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
685 830 aaronmk
686 833 aaronmk
##### Database management
687
688 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
689
    '''For kw_args, see tables()'''
690
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
691 833 aaronmk
692 832 aaronmk
##### Heuristic queries
693
694 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
695 1554 aaronmk
    '''Recovers from errors.
696 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
697
    '''
698 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
699
700 471 aaronmk
    try:
701 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
702 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
703
            row_ct_ref[0] += cur.rowcount
704
        return value(cur)
705 471 aaronmk
    except DuplicateKeyException, e:
706 2104 aaronmk
        return value(select(db, table, [pkey_],
707 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
708 471 aaronmk
709 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
710 830 aaronmk
    '''Recovers from errors'''
711 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
712 14 aaronmk
    except StopIteration:
713 40 aaronmk
        if not create: raise
714 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
715 2078 aaronmk
716 2134 aaronmk
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
717 2279 aaronmk
    row_ct_ref=None):
718 2078 aaronmk
    '''Recovers from errors.
719
    Only works under PostgreSQL (uses INSERT RETURNING).
720 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
721
        tables to join with it using the main input table's pkey
722 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
723
        * out_table_col: sql_gen.Col|str
724
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCode
725
    @return sql_gen.Col Where the output pkeys are made available
726 2078 aaronmk
    '''
727 2312 aaronmk
    for in_table_col in mapping.itervalues():
728
        assert isinstance(in_table_col, sql_gen.Col)
729
730 2251 aaronmk
    temp_prefix = clean_name(out_table)
731
    pkeys_ref = [temp_prefix+'_pkeys']
732 2131 aaronmk
733 2132 aaronmk
    # Join together input tables
734 2131 aaronmk
    in_tables = in_tables[:] # don't modify input!
735
    in_tables0 = in_tables.pop(0) # first table is separate
736 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
737 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
738 2278 aaronmk
    insert_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_using})
739
        for v in in_tables]
740 2131 aaronmk
741 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
742 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
743 2142 aaronmk
744 2236 aaronmk
    pkeys = [in_pkey, out_pkey]
745
    pkeys_cols = [in_pkey_col, out_pkey_col]
746
747 2201 aaronmk
    pkeys_table_exists_ref = [False]
748
    def run_query_into_pkeys(query, params):
749
        if pkeys_table_exists_ref[0]:
750 2236 aaronmk
            insert_select(db, pkeys_ref[0], pkeys, query, params)
751 2201 aaronmk
        else:
752
            run_query_into(db, query, params, into_ref=pkeys_ref)
753
            pkeys_table_exists_ref[0] = True
754
755 2208 aaronmk
    conds = {}
756 2233 aaronmk
    distinct_on = []
757 2207 aaronmk
    def mk_main_select(cols):
758 2208 aaronmk
        return mk_select(db, insert_joins, cols, conds, distinct_on,
759 2297 aaronmk
            limit=limit, start=start, default_table=in_tables0)
760 2132 aaronmk
761 2309 aaronmk
    def log_exc(e):
762
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
763 2245 aaronmk
    def log_ignore(in_col, value):
764
        db.log_debug('Ignoring rows with '+in_col+' = '+value)
765
766 2206 aaronmk
    # Do inserts and selects
767 2257 aaronmk
    join_cols = {}
768
    filter_join_added = False
769 2251 aaronmk
    out_pkeys_ref = [temp_prefix+'_out_pkeys']
770 2252 aaronmk
    in_pkeys_ref = [temp_prefix+'_in_pkeys']
771 2206 aaronmk
    while True:
772 2303 aaronmk
        has_joins = join_cols != {}
773
774 2305 aaronmk
        # Prepare to insert new rows
775 2303 aaronmk
        if has_joins:
776 2316 aaronmk
            insert_args = dict()
777 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
778 2303 aaronmk
            if not filter_join_added:
779 2305 aaronmk
                insert_joins.append(sql_gen.Join(out_table, join_cols,
780
                    sql_gen.filter_out))
781 2303 aaronmk
                filter_join_added = True
782 2316 aaronmk
        else: insert_args = dict(returning=out_pkey, into_ref=out_pkeys_ref)
783 2303 aaronmk
784 2305 aaronmk
        db.log_debug('Inserting new rows')
785 2206 aaronmk
        try:
786
            cur = insert_select(db, out_table, mapping.keys(),
787 2316 aaronmk
                *mk_main_select(mapping.values()), recover=True, **insert_args)
788 2206 aaronmk
        except DuplicateKeyException, e:
789 2309 aaronmk
            log_exc(e)
790
791 2258 aaronmk
            old_join_cols = join_cols.copy()
792 2257 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
793 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
794 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
795 2309 aaronmk
796 2206 aaronmk
            # rerun loop with additional constraints
797 2230 aaronmk
        except NullValueException, e:
798 2309 aaronmk
            log_exc(e)
799
800 2230 aaronmk
            out_col, = e.cols
801
            try: in_col = mapping[out_col]
802
            except KeyError: # no mapping for missing col, so every row invalid
803 2245 aaronmk
                db.log_debug('Missing mapping for '+out_col)
804 2230 aaronmk
                run_query_into_pkeys(*mk_select(db, insert_joins,
805 2297 aaronmk
                    [in_pkey_col, sql_gen.NamedCode(out_pkey, None)], start=0))
806 2230 aaronmk
                break
807
            else:
808 2245 aaronmk
                log_ignore(in_col, 'NULL')
809 2230 aaronmk
                conds[in_col] = sql_gen.CompareCond(None, '!=')
810
                # rerun loop with additional constraints
811 2243 aaronmk
        except FunctionValueException, e:
812 2309 aaronmk
            log_exc(e)
813
814 2243 aaronmk
            assert e.name == sql_gen.unescape_table(out_table)
815
            out_col = 'value' # assume function param was named "value"
816
            in_col = mapping[out_col]
817 2245 aaronmk
            value = e.value
818
            log_ignore(in_col, value)
819
            conds[in_col] = sql_gen.CompareCond(value, '!=')
820 2243 aaronmk
            # rerun loop with additional constraints
821 2303 aaronmk
        else:
822
            if row_ct_ref != None and cur.rowcount >= 0:
823
                row_ct_ref[0] += cur.rowcount
824
                add_row_num(db, out_pkeys_ref[0]) # for joining with input pkeys
825
826 2305 aaronmk
            if has_joins:
827
                select_joins = insert_joins+[sql_gen.Join(out_table, join_cols)]
828
                db.log_debug('Getting output pkeys of existing/inserted rows')
829
                run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols,
830
                    start=0))
831
            else:
832
                db.log_debug('Getting input pkeys for rows in insert')
833
                run_query_into(db, *mk_main_select([in_pkey]),
834
                    into_ref=in_pkeys_ref)
835
                add_row_num(db, in_pkeys_ref[0]) # for joining with output pkeys
836
837
                db.log_debug('Joining together output and input pkeys')
838
                run_query_into_pkeys(*mk_select(db, [in_pkeys_ref[0],
839
                    sql_gen.Join(out_pkeys_ref[0],
840
                    {row_num_col: sql_gen.join_using})], pkeys, start=0))
841 2303 aaronmk
842
            break # insert successful
843 2132 aaronmk
844 2268 aaronmk
    return sql_gen.Col(out_pkey, pkeys_ref[0])
845 2115 aaronmk
846
##### Data cleanup
847
848 2290 aaronmk
def cleanup_table(db, table, cols):
849 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
850
851 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
852 2115 aaronmk
    cols = map(esc_name_, cols)
853
854
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
855
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
856
            for col in cols))),
857
        dict(null0='', null1=r'\N'))