1 |
996
|
aaronmk
|
# XML "function" nodes that transform their contents
|
2 |
86
|
aaronmk
|
|
3 |
111
|
aaronmk
|
import datetime
|
4 |
968
|
aaronmk
|
import re
|
5 |
1219
|
aaronmk
|
import sre_constants
|
6 |
2017
|
aaronmk
|
import warnings
|
7 |
111
|
aaronmk
|
|
8 |
1607
|
aaronmk
|
import angles
|
9 |
818
|
aaronmk
|
import dates
|
10 |
300
|
aaronmk
|
import exc
|
11 |
1580
|
aaronmk
|
import format
|
12 |
917
|
aaronmk
|
import maps
|
13 |
3688
|
aaronmk
|
import sql
|
14 |
3077
|
aaronmk
|
import sql_io
|
15 |
1234
|
aaronmk
|
import strings
|
16 |
827
|
aaronmk
|
import term
|
17 |
1468
|
aaronmk
|
import units
|
18 |
1047
|
aaronmk
|
import util
|
19 |
86
|
aaronmk
|
import xml_dom
|
20 |
1321
|
aaronmk
|
import xpath
|
21 |
86
|
aaronmk
|
|
22 |
995
|
aaronmk
|
##### Exceptions
|
23 |
|
|
|
24 |
1612
|
aaronmk
|
class SyntaxError(exc.ExceptionWithCause):
|
25 |
797
|
aaronmk
|
def __init__(self, cause):
|
26 |
1611
|
aaronmk
|
exc.ExceptionWithCause.__init__(self, 'Invalid XML function syntax',
|
27 |
|
|
cause)
|
28 |
278
|
aaronmk
|
|
29 |
1613
|
aaronmk
|
class FormatException(exc.ExceptionWithCause):
|
30 |
|
|
def __init__(self, cause):
|
31 |
|
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exc.ExceptionWithCause.__init__(self, 'Invalid input value', cause)
|
32 |
843
|
aaronmk
|
|
33 |
1992
|
aaronmk
|
##### Helper functions
|
34 |
995
|
aaronmk
|
|
35 |
1992
|
aaronmk
|
def map_items(func, items):
|
36 |
|
|
return [(name, func(value)) for name, value in items]
|
37 |
|
|
|
38 |
|
|
def cast(type_, val):
|
39 |
|
|
'''Throws FormatException if can't cast'''
|
40 |
|
|
try: return type_(val)
|
41 |
|
|
except ValueError, e: raise FormatException(e)
|
42 |
|
|
|
43 |
|
|
def conv_items(type_, items):
|
44 |
|
|
return map_items(lambda val: cast(type_, val),
|
45 |
|
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xml_dom.TextEntryOnlyIter(items))
|
46 |
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|
47 |
|
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def pop_value(items, name='value'):
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48 |
|
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'''@param name Name of value param, or None to accept any name'''
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49 |
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try: last = items.pop() # last entry contains value
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50 |
|
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except IndexError: return None # input is empty and no actions
|
51 |
|
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if name != None and last[0] != name: return None # input is empty
|
52 |
|
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return last[1]
|
53 |
|
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|
54 |
3335
|
aaronmk
|
def merge_tagged(root):
|
55 |
|
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'''Merges siblings in root that are marked as mergeable.
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56 |
|
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Used to recombine pieces of nodes that were split apart in the mappings.
|
57 |
|
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'''
|
58 |
|
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for name in set((c.tagName for c in xpath.get(root, '*[@merge=1]'))):
|
59 |
|
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xml_dom.merge_by_name(root, name)
|
60 |
|
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|
61 |
|
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# Recurse
|
62 |
|
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for child in xml_dom.NodeElemIter(root): merge_tagged(child)
|
63 |
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|
64 |
995
|
aaronmk
|
funcs = {}
|
65 |
|
|
|
66 |
1992
|
aaronmk
|
##### Public functions
|
67 |
|
|
|
68 |
2112
|
aaronmk
|
def is_func_name(name):
|
69 |
|
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return name.startswith('_') and name != '_' # '_' is default root node name
|
70 |
|
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|
71 |
|
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def is_func(node): return is_func_name(node.tagName)
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72 |
|
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|
73 |
|
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def is_xml_func_name(name): return is_func_name(name) and name in funcs
|
74 |
|
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|
75 |
|
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def is_xml_func(node): return is_xml_func_name(node.tagName)
|
76 |
|
|
|
77 |
3660
|
aaronmk
|
def process(node, on_error=exc.reraise, is_rel_func=None, db=None):
|
78 |
2597
|
aaronmk
|
'''Evaluates the XML functions in an XML tree.
|
79 |
3424
|
aaronmk
|
@param is_rel_func None|f(str) Tests if a name is a relational function.
|
80 |
2602
|
aaronmk
|
* If != None: Non-relational functions are removed, or relational
|
81 |
|
|
functions are treated specially, depending on the db param (below).
|
82 |
|
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@param db
|
83 |
|
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* If None: Non-relational functions other than structural functions are
|
84 |
|
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replaced with their last parameter (usually the value), not evaluated.
|
85 |
|
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This is used in column-based mode to remove XML-only functions.
|
86 |
|
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* If != None: Relational functions are evaluated directly. This is used
|
87 |
|
|
in row-based mode to combine relational and XML functions.
|
88 |
2597
|
aaronmk
|
'''
|
89 |
3424
|
aaronmk
|
has_rel_funcs = is_rel_func != None
|
90 |
2602
|
aaronmk
|
assert db == None or has_rel_funcs # rel_funcs required if db set
|
91 |
2597
|
aaronmk
|
|
92 |
3333
|
aaronmk
|
for child in xml_dom.NodeElemIter(node):
|
93 |
3424
|
aaronmk
|
process(child, on_error, is_rel_func, db)
|
94 |
3335
|
aaronmk
|
merge_tagged(node)
|
95 |
3333
|
aaronmk
|
|
96 |
995
|
aaronmk
|
name = node.tagName
|
97 |
3227
|
aaronmk
|
if not is_func_name(name): return node # not any kind of function
|
98 |
2602
|
aaronmk
|
|
99 |
|
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row_mode = has_rel_funcs and db != None
|
100 |
|
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column_mode = has_rel_funcs and db == None
|
101 |
3629
|
aaronmk
|
func = funcs.get(name, None)
|
102 |
3028
|
aaronmk
|
items = list(xml_dom.NodeTextEntryIter(node))
|
103 |
2602
|
aaronmk
|
|
104 |
3029
|
aaronmk
|
# Parse function
|
105 |
|
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if len(items) == 1 and items[0][0].isdigit(): # has single numeric param
|
106 |
|
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# pass-through optimization for aggregating functions with one arg
|
107 |
|
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value = items[0][1] # pass through first arg
|
108 |
3629
|
aaronmk
|
elif row_mode and (is_rel_func(name) or func == None): # row-based mode
|
109 |
3688
|
aaronmk
|
try: value = sql_io.put(db, name, dict(items)) # evaluate using DB
|
110 |
|
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except sql.DoesNotExistException: return # preserve unknown funcs
|
111 |
|
|
# possibly a built-in function of db_xml.put()
|
112 |
4024
|
aaronmk
|
elif column_mode or func == None:
|
113 |
3640
|
aaronmk
|
# local XML function can't be used or does not exist
|
114 |
|
|
if column_mode and is_rel_func(name): return # preserve relational funcs
|
115 |
|
|
# otherwise XML-only in column mode, or DB-only in XML output mode
|
116 |
|
|
value = pop_value(items, None) # just replace with last param
|
117 |
2602
|
aaronmk
|
else: # local XML function
|
118 |
3629
|
aaronmk
|
try: value = func(items, node)
|
119 |
1613
|
aaronmk
|
except Exception, e: # also catch non-wrapped exceptions (XML func bugs)
|
120 |
1371
|
aaronmk
|
# Save in case another exception raised, overwriting sys.exc_info()
|
121 |
|
|
exc.add_traceback(e)
|
122 |
1562
|
aaronmk
|
str_ = strings.ustr(node)
|
123 |
995
|
aaronmk
|
exc.add_msg(e, 'function:\n'+str_)
|
124 |
1810
|
aaronmk
|
xml_dom.replace(node, xml_dom.mk_comment(node.ownerDocument,
|
125 |
|
|
'\n'+term.emph_multiline(str_)))
|
126 |
|
|
|
127 |
995
|
aaronmk
|
on_error(e)
|
128 |
2602
|
aaronmk
|
return # in case on_error() returns
|
129 |
3227
|
aaronmk
|
|
130 |
3333
|
aaronmk
|
xml_dom.replace_with_text(node, value)
|
131 |
995
|
aaronmk
|
|
132 |
1469
|
aaronmk
|
##### XML functions
|
133 |
995
|
aaronmk
|
|
134 |
|
|
# Function names must start with _ to avoid collisions with real tags
|
135 |
|
|
# Functions take arguments (items)
|
136 |
|
|
|
137 |
1469
|
aaronmk
|
#### Conditionals
|
138 |
|
|
|
139 |
2016
|
aaronmk
|
def _eq(items, node):
|
140 |
1234
|
aaronmk
|
items = dict(items)
|
141 |
|
|
try:
|
142 |
|
|
left = items['left']
|
143 |
|
|
right = items['right']
|
144 |
3798
|
aaronmk
|
except KeyError: return '' # a value was not mapped to
|
145 |
1234
|
aaronmk
|
return util.bool2str(left == right)
|
146 |
|
|
funcs['_eq'] = _eq
|
147 |
|
|
|
148 |
2016
|
aaronmk
|
def _if(items, node):
|
149 |
3940
|
aaronmk
|
'''Can add `@name` attr to distinguish separate _if statements'''
|
150 |
1234
|
aaronmk
|
items = dict(items)
|
151 |
3920
|
aaronmk
|
then = items.get('then', None)
|
152 |
3801
|
aaronmk
|
cond = items.get('cond', None)
|
153 |
1234
|
aaronmk
|
else_ = items.get('else', None)
|
154 |
3801
|
aaronmk
|
|
155 |
|
|
cond = cond != None and bool(cast(strings.ustr, cond)) # None == False
|
156 |
1234
|
aaronmk
|
if cond: return then
|
157 |
|
|
else: return else_
|
158 |
|
|
funcs['_if'] = _if
|
159 |
|
|
|
160 |
1469
|
aaronmk
|
#### Transforming values
|
161 |
|
|
|
162 |
2016
|
aaronmk
|
def _collapse(items, node):
|
163 |
2012
|
aaronmk
|
'''Collapses a subtree if the "value" element in it is NULL'''
|
164 |
|
|
items = dict(items)
|
165 |
|
|
try: require = cast(strings.ustr, items['require'])
|
166 |
|
|
except KeyError, e: raise SyntaxError(e)
|
167 |
|
|
value = items.get('value', None)
|
168 |
|
|
|
169 |
2558
|
aaronmk
|
if xpath.get_value(value, require, allow_rooted=False) == None: return None
|
170 |
2012
|
aaronmk
|
else: return value
|
171 |
|
|
funcs['_collapse'] = _collapse
|
172 |
|
|
|
173 |
1602
|
aaronmk
|
def repl(repls, value):
|
174 |
1537
|
aaronmk
|
'''Raises error if value not in map and no special '*' entry
|
175 |
1602
|
aaronmk
|
@param repls dict repl:with
|
176 |
|
|
repl "*" means all other input values
|
177 |
|
|
with "*" means keep input value the same
|
178 |
|
|
with "" means ignore input value
|
179 |
1537
|
aaronmk
|
'''
|
180 |
1602
|
aaronmk
|
try: new_value = repls[value]
|
181 |
1304
|
aaronmk
|
except KeyError, e:
|
182 |
1537
|
aaronmk
|
# Save traceback right away in case another exception raised
|
183 |
2984
|
aaronmk
|
fe = FormatException(e)
|
184 |
1602
|
aaronmk
|
try: new_value = repls['*']
|
185 |
1609
|
aaronmk
|
except KeyError: raise fe
|
186 |
1537
|
aaronmk
|
if new_value == '*': new_value = value # '*' means keep input value the same
|
187 |
1607
|
aaronmk
|
return new_value
|
188 |
1602
|
aaronmk
|
|
189 |
2016
|
aaronmk
|
def _map(items, node):
|
190 |
1602
|
aaronmk
|
'''See repl()
|
191 |
|
|
@param items
|
192 |
|
|
<last_entry> Value
|
193 |
|
|
<other_entries> name=value Mappings. Special values: See repl() repls.
|
194 |
|
|
'''
|
195 |
|
|
items = conv_items(strings.ustr, items) # get *once* from iter, check types
|
196 |
|
|
value = pop_value(items)
|
197 |
|
|
if value == None: return None # input is empty
|
198 |
1607
|
aaronmk
|
return util.none_if(repl(dict(items), value), u'') # empty value means None
|
199 |
1219
|
aaronmk
|
funcs['_map'] = _map
|
200 |
|
|
|
201 |
2016
|
aaronmk
|
def _replace(items, node):
|
202 |
1562
|
aaronmk
|
items = conv_items(strings.ustr, items) # get *once* from iter, check types
|
203 |
1581
|
aaronmk
|
value = pop_value(items)
|
204 |
|
|
if value == None: return None # input is empty
|
205 |
1219
|
aaronmk
|
try:
|
206 |
|
|
for repl, with_ in items:
|
207 |
|
|
if re.match(r'^\w+$', repl):
|
208 |
|
|
repl = r'(?<![^\W_])'+repl+r'(?![^\W_])' # match whole word
|
209 |
|
|
value = re.sub(repl, with_, value)
|
210 |
1612
|
aaronmk
|
except sre_constants.error, e: raise SyntaxError(e)
|
211 |
1624
|
aaronmk
|
return util.none_if(value.strip(), u'') # empty strings always mean None
|
212 |
1219
|
aaronmk
|
funcs['_replace'] = _replace
|
213 |
|
|
|
214 |
1469
|
aaronmk
|
#### Quantities
|
215 |
|
|
|
216 |
2016
|
aaronmk
|
def _units(items, node):
|
217 |
1562
|
aaronmk
|
items = conv_items(strings.ustr, items) # get *once* from iter, check types
|
218 |
1581
|
aaronmk
|
value = pop_value(items)
|
219 |
|
|
if value == None: return None # input is empty
|
220 |
1471
|
aaronmk
|
|
221 |
1581
|
aaronmk
|
quantity = units.str2quantity(value)
|
222 |
1471
|
aaronmk
|
try:
|
223 |
|
|
for action, units_ in items:
|
224 |
|
|
units_ = util.none_if(units_, u'')
|
225 |
|
|
if action == 'default': units.set_default_units(quantity, units_)
|
226 |
1567
|
aaronmk
|
elif action == 'to':
|
227 |
|
|
try: quantity = units.convert(quantity, units_)
|
228 |
1609
|
aaronmk
|
except ValueError, e: raise FormatException(e)
|
229 |
1612
|
aaronmk
|
else: raise SyntaxError(ValueError('Invalid action: '+action))
|
230 |
1609
|
aaronmk
|
except units.MissingUnitsException, e: raise FormatException(e)
|
231 |
1471
|
aaronmk
|
return units.quantity2str(quantity)
|
232 |
1225
|
aaronmk
|
funcs['_units'] = _units
|
233 |
|
|
|
234 |
1399
|
aaronmk
|
def parse_range(str_, range_sep='-'):
|
235 |
|
|
default = (str_, None)
|
236 |
|
|
start, sep, end = str_.partition(range_sep)
|
237 |
|
|
if sep == '': return default # not a range
|
238 |
1427
|
aaronmk
|
if start == '' and range_sep == '-': return default # negative number
|
239 |
1399
|
aaronmk
|
return tuple(d.strip() for d in (start, end))
|
240 |
|
|
|
241 |
2016
|
aaronmk
|
def _rangeStart(items, node):
|
242 |
1562
|
aaronmk
|
items = dict(conv_items(strings.ustr, items))
|
243 |
1399
|
aaronmk
|
try: value = items['value']
|
244 |
1406
|
aaronmk
|
except KeyError: return None # input is empty
|
245 |
1399
|
aaronmk
|
return parse_range(value)[0]
|
246 |
|
|
funcs['_rangeStart'] = _rangeStart
|
247 |
|
|
|
248 |
2016
|
aaronmk
|
def _rangeEnd(items, node):
|
249 |
1562
|
aaronmk
|
items = dict(conv_items(strings.ustr, items))
|
250 |
1399
|
aaronmk
|
try: value = items['value']
|
251 |
1406
|
aaronmk
|
except KeyError: return None # input is empty
|
252 |
1399
|
aaronmk
|
return parse_range(value)[1]
|
253 |
|
|
funcs['_rangeEnd'] = _rangeEnd
|
254 |
|
|
|
255 |
2016
|
aaronmk
|
def _range(items, node):
|
256 |
1472
|
aaronmk
|
items = dict(conv_items(float, items))
|
257 |
|
|
from_ = items.get('from', None)
|
258 |
|
|
to = items.get('to', None)
|
259 |
|
|
if from_ == None or to == None: return None
|
260 |
|
|
return str(to - from_)
|
261 |
|
|
funcs['_range'] = _range
|
262 |
|
|
|
263 |
2016
|
aaronmk
|
def _avg(items, node):
|
264 |
86
|
aaronmk
|
count = 0
|
265 |
|
|
sum_ = 0.
|
266 |
278
|
aaronmk
|
for name, value in conv_items(float, items):
|
267 |
86
|
aaronmk
|
count += 1
|
268 |
|
|
sum_ += value
|
269 |
1472
|
aaronmk
|
if count == 0: return None # input is empty
|
270 |
|
|
else: return str(sum_/count)
|
271 |
995
|
aaronmk
|
funcs['_avg'] = _avg
|
272 |
86
|
aaronmk
|
|
273 |
968
|
aaronmk
|
class CvException(Exception):
|
274 |
|
|
def __init__(self):
|
275 |
|
|
Exception.__init__(self, 'CV (coefficient of variation) values are only'
|
276 |
|
|
' allowed for ratio scale data '
|
277 |
|
|
'(see <http://en.wikipedia.org/wiki/Coefficient_of_variation>)')
|
278 |
|
|
|
279 |
2016
|
aaronmk
|
def _noCV(items, node):
|
280 |
3631
|
aaronmk
|
items = list(conv_items(strings.ustr, items))
|
281 |
3046
|
aaronmk
|
try: name, value = items.pop() # last entry contains value
|
282 |
|
|
except IndexError: return None # input is empty
|
283 |
1609
|
aaronmk
|
if re.match('^(?i)CV *\d+$', value): raise FormatException(CvException())
|
284 |
968
|
aaronmk
|
return value
|
285 |
995
|
aaronmk
|
funcs['_noCV'] = _noCV
|
286 |
968
|
aaronmk
|
|
287 |
1469
|
aaronmk
|
#### Names
|
288 |
|
|
|
289 |
328
|
aaronmk
|
_name_parts_slices_items = [
|
290 |
|
|
('first', slice(None, 1)),
|
291 |
|
|
('middle', slice(1, -1)),
|
292 |
|
|
('last', slice(-1, None)),
|
293 |
|
|
]
|
294 |
|
|
name_parts_slices = dict(_name_parts_slices_items)
|
295 |
|
|
name_parts = [name for name, slice_ in _name_parts_slices_items]
|
296 |
|
|
|
297 |
2016
|
aaronmk
|
def _name(items, node):
|
298 |
3631
|
aaronmk
|
items = dict(list(conv_items(strings.ustr, items)))
|
299 |
102
|
aaronmk
|
parts = []
|
300 |
328
|
aaronmk
|
for part in name_parts:
|
301 |
|
|
if part in items: parts.append(items[part])
|
302 |
102
|
aaronmk
|
return ' '.join(parts)
|
303 |
995
|
aaronmk
|
funcs['_name'] = _name
|
304 |
102
|
aaronmk
|
|
305 |
1607
|
aaronmk
|
#### Angles
|
306 |
|
|
|
307 |
2016
|
aaronmk
|
def _compass(items, node):
|
308 |
1607
|
aaronmk
|
'''Converts a compass direction (N, NE, NNE, etc.) into a degree heading'''
|
309 |
|
|
items = dict(conv_items(strings.ustr, items))
|
310 |
|
|
try: value = items['value']
|
311 |
|
|
except KeyError: return None # input is empty
|
312 |
|
|
|
313 |
|
|
if not value.isupper(): return value # pass through other coordinate formats
|
314 |
|
|
try: return util.cast(str, angles.compass2heading(value)) # ignore None
|
315 |
|
|
except KeyError, e: raise FormatException(e)
|
316 |
|
|
funcs['_compass'] = _compass
|