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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
36
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
67
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class EmptyRowException(DbException): pass
69
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##### Warnings
71
72
class DbWarning(UserWarning): pass
73
74 1930 aaronmk
##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
91
def next_value(cur): return next_row(cur)[0]
92
93
def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
100
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##### Input validation
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103
def check_name(name):
104
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
105
        +'" may contain only alphanumeric characters and _')
106
107
def esc_name_by_module(module, name, ignore_case=False):
108
    if module == 'psycopg2':
109
        if ignore_case:
110
            # Don't enclose in quotes because this disables case-insensitivity
111
            check_name(name)
112
            return name
113
        else: quote = '"'
114
    elif module == 'MySQLdb': quote = '`'
115
    else: raise NotImplementedError("Can't escape name for "+module+' database')
116
    return quote + name.replace(quote, '') + quote
117
118
def esc_name_by_engine(engine, name, **kw_args):
119
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
120
121
def esc_name(db, name, **kw_args):
122
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
123
124
def qual_name(db, schema, table):
125
    def esc_name_(name): return esc_name(db, name)
126
    table = esc_name_(table)
127
    if schema != None: return esc_name_(schema)+'.'+table
128
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
135
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
136
    'PostgreSQL': ('psycopg2', {}),
137
}
138
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DatabaseErrors_set = set([DbException])
140
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
143
    DatabaseErrors_set.add(module.DatabaseError)
144
    global DatabaseErrors
145
    DatabaseErrors = tuple(DatabaseErrors_set)
146
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def db_config_str(db_config):
148
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
156
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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164
        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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168
    def __getattr__(self, name):
169
        if name == '__dict__': raise Exception('getting __dict__')
170
        if name == 'db': return self._db()
171
        else: raise AttributeError()
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    def __getstate__(self):
174
        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
177
        return state
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    def connected(self): return self.__db != None
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    def _db(self):
182
        if self.__db == None:
183
            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
187
            module = __import__(module_name)
188
            _add_module(module)
189
            for orig, new in mappings.iteritems():
190
                try: util.rename_key(db_config, orig, new)
191
                except KeyError: pass
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            # Connect
194
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
198
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
200
                schemas_ = ''.join((esc_name(self, s)+', '
201
                    for s in schemas.split(',')))
202
                run_raw_query(self, "SELECT set_config('search_path', \
203
%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
221
                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
226
                self._cache_result()
227
                raise
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            # Fetch all rows so result will be cached
229
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
233
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
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                try: return self.iter.next()
260
                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
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            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
269
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
276
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
281
        try:
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            # Get cursor
283
            if cacheable:
284
                query_lookup = _query_lookup(query, params)
285
                try:
286
                    cur = self.query_results[query_lookup]
287
                    used_cache = True
288
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
296
                elif cacheable: cache_status = 'Cache miss'
297
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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301
        return cur
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303
    def is_cached(self, query, params=None):
304
        return _query_lookup(query, params) in self.query_results
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306
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
309
        self._savepoint += 1
310
        try:
311
            try: return_val = func()
312
            finally:
313
                self._savepoint -= 1
314
                assert self._savepoint >= 0
315
        except:
316
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
317
            raise
318
        else:
319
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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323
    def do_autocommit(self):
324
        '''Autocommits if outside savepoint'''
325
        assert self._savepoint >= 0
326
        if self.autocommit and self._savepoint == 0:
327
            self.log_debug('Autocommiting')
328
            self.db.commit()
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330 1869 aaronmk
connect = DbConn
331
332 832 aaronmk
##### Querying
333
334 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
339
    module = util.root_module(db.db)
340
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
341
    else: raise NotImplementedError("Can't mogrify query for "+module+
342
        ' database')
343
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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348 1894 aaronmk
def run_query(db, query, params=None, recover=None, cacheable=False):
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    if recover == None: recover = False
350
351 2148 aaronmk
    try:
352
        def run(): return run_raw_query(db, query, params, cacheable)
353
        if recover and not db.is_cached(query, params):
354
            return with_savepoint(db, run)
355
        else: return run() # don't need savepoint if cached
356
    except Exception, e:
357
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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        match = re.search(r'duplicate key value violates unique constraint '
361 2368 aaronmk
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
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        if match:
363
            constraint, table = match.groups()
364
            try: cols = index_cols(db, table, constraint)
365
            except NotImplementedError: raise e
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            else: raise DuplicateKeyException(constraint, cols, e)
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368 2368 aaronmk
        match = re.search(r'null value in column "(\w+?)" violates not-null '
369 2239 aaronmk
            r'constraint', msg)
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        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
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372 2368 aaronmk
        match = re.search(r'invalid input (?:syntax|value)\b.*?: "(.+?)"\n'
373
            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
374 2240 aaronmk
        if match:
375 2373 aaronmk
            value, name = match.groups()
376
            raise FunctionValueException(name, strings.to_unicode(value), e)
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        match = re.search(r'relation "(\w+?)" already exists', msg)
379 2148 aaronmk
        if match: raise DuplicateTableException(match.group(1), e)
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381 2368 aaronmk
        match = re.search(r'function "(\w+?)" already exists', msg)
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        if match: raise DuplicateFunctionException(match.group(1), e)
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        raise # no specific exception raised
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##### Basic queries
387
388 2153 aaronmk
def next_version(name):
389
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
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    match = re.match(r'^v(\d+)_(.*)$', name)
392
    if match:
393
        version = int(match.group(1))+1
394
        name = match.group(2)
395
    return 'v'+str(version)+'_'+name
396
397 2151 aaronmk
def run_query_into(db, query, params, into_ref=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
399
    For params, see run_query().
400
    '''
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    if into_ref == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        kw_args['recover'] = True
404
        while True:
405
            try:
406 2194 aaronmk
                create_query = 'CREATE'
407
                if not db.debug: create_query += ' TEMP'
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                into = sql_gen.as_Table(into_ref[0]).to_str(db)
409
                create_query += ' TABLE '+into+' AS '+query
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411
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
413
            except DuplicateTableException, e:
414
                into_ref[0] = next_version(into_ref[0])
415
                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
418
419 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
420
421 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
422 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
423 1981 aaronmk
    '''
424 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
425 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
426 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
428 2379 aaronmk
        * container can be any iterable type
429 2218 aaronmk
        * compare_left_side: Code|str (for col name)
430
        * compare_right_side: ValueCond|literal value
431 2199 aaronmk
    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
432
        use all columns
433 2054 aaronmk
    @return tuple(query, params)
434 1981 aaronmk
    '''
435 2315 aaronmk
    # Parse tables param
436 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
437 2141 aaronmk
    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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440 2315 aaronmk
    # Parse other params
441 2376 aaronmk
    if conds == None: conds = []
442
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
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    assert limit == None or type(limit) == int
445 865 aaronmk
    assert start == None or type(start) == int
446 2315 aaronmk
    if order_by is order_by_pkey:
447
        if distinct_on != []: order_by = None
448
        else: order_by = pkey(db, table0, recover=True)
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450 2315 aaronmk
    query = 'SELECT'
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452 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
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454 2200 aaronmk
    # DISTINCT ON columns
455 2233 aaronmk
    if distinct_on != []:
456 2200 aaronmk
        query += ' DISTINCT'
457 2254 aaronmk
        if distinct_on is not distinct_on_all:
458 2200 aaronmk
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
459
460
    # Columns
461
    query += ' '
462 1135 aaronmk
    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
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465
    # Main table
466 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
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    # Add joins
469 2271 aaronmk
    left_table = table0
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    for join_ in tables:
471
        table = join_.table
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473 2343 aaronmk
        # Parse special values
474
        if join_.type_ is sql_gen.filter_out: # filter no match
475 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
476
                None))
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478 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
479 2122 aaronmk
480
        left_table = table
481
482 865 aaronmk
    missing = True
483 2376 aaronmk
    if conds != []:
484 2284 aaronmk
        query += ' WHERE '+(' AND '.join((sql_gen.as_ValueCond(r).to_str(db, l)
485 2376 aaronmk
            for l, r in conds)))
486 865 aaronmk
        missing = False
487 2227 aaronmk
    if order_by != None:
488 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
489 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
490
    if start != None:
491
        if start != 0: query += ' OFFSET '+str(start)
492
        missing = False
493
    if missing: warnings.warn(DbWarning(
494
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
495
496 2315 aaronmk
    return (query, [])
497 11 aaronmk
498 2054 aaronmk
def select(db, *args, **kw_args):
499
    '''For params, see mk_select() and run_query()'''
500
    recover = kw_args.pop('recover', None)
501
    cacheable = kw_args.pop('cacheable', True)
502
503
    query, params = mk_select(db, *args, **kw_args)
504
    return run_query(db, query, params, recover, cacheable)
505
506 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
507 2292 aaronmk
    returning=None, embeddable=False):
508 1960 aaronmk
    '''
509
    @param returning str|None An inserted column (such as pkey) to return
510 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
511 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
512
        query will be fully cached, not just if it raises an exception.
513 1960 aaronmk
    '''
514 2328 aaronmk
    table = sql_gen.as_Table(table)
515 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
516
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
517 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
518 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
519 2063 aaronmk
520
    # Build query
521 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
522 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
523 2063 aaronmk
    query += ' '+select_query
524
525
    if returning != None:
526 2327 aaronmk
        returning_name = copy.copy(returning)
527
        returning_name.table = None
528
        returning_name = returning_name.to_str(db)
529
        query += ' RETURNING '+returning_name
530 2063 aaronmk
531 2070 aaronmk
    if embeddable:
532 2327 aaronmk
        assert returning != None
533
534 2070 aaronmk
        # Create function
535 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
536 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
537 2189 aaronmk
        while True:
538
            try:
539 2327 aaronmk
                func_schema = None
540
                if not db.debug: func_schema = 'pg_temp'
541
                function = sql_gen.Table(function_name, func_schema).to_str(db)
542 2194 aaronmk
543 2189 aaronmk
                function_query = '''\
544
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
545 2070 aaronmk
    LANGUAGE sql
546
    AS $$'''+mogrify(db, query, params)+''';$$;
547
'''
548 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
549
                break # this version was successful
550
            except DuplicateFunctionException, e:
551
                function_name = next_version(function_name)
552
                # try again with next version of name
553 2070 aaronmk
554 2337 aaronmk
        # Return query that uses function
555
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
556
            [returning_name]) # AS clause requires function alias
557
        return mk_select(db, func_table, start=0, order_by=None)
558 2070 aaronmk
559 2066 aaronmk
    return (query, params)
560
561
def insert_select(db, *args, **kw_args):
562 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
563 2152 aaronmk
    @param into_ref List with name of temp table to place RETURNING values in
564 2072 aaronmk
    '''
565 2151 aaronmk
    into_ref = kw_args.pop('into_ref', None)
566
    if into_ref != None: kw_args['embeddable'] = True
567 2066 aaronmk
    recover = kw_args.pop('recover', None)
568
    cacheable = kw_args.pop('cacheable', True)
569
570
    query, params = mk_insert_select(db, *args, **kw_args)
571 2153 aaronmk
    return run_query_into(db, query, params, into_ref, recover=recover,
572
        cacheable=cacheable)
573 2063 aaronmk
574 2066 aaronmk
default = object() # tells insert() to use the default value for a column
575
576 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
577 2085 aaronmk
    '''For params, see insert_select()'''
578 1960 aaronmk
    if lists.is_seq(row): cols = None
579
    else:
580
        cols = row.keys()
581
        row = row.values()
582
    row = list(row) # ensure that "!= []" works
583
584 1961 aaronmk
    # Check for special values
585
    labels = []
586
    values = []
587
    for value in row:
588 2254 aaronmk
        if value is default: labels.append('DEFAULT')
589 1961 aaronmk
        else:
590
            labels.append('%s')
591
            values.append(value)
592
593
    # Build query
594 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
595
    else: query = None
596 1554 aaronmk
597 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
598 11 aaronmk
599 135 aaronmk
def last_insert_id(db):
600 1849 aaronmk
    module = util.root_module(db.db)
601 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
602
    elif module == 'MySQLdb': return db.insert_id()
603
    else: return None
604 13 aaronmk
605 1968 aaronmk
def truncate(db, table, schema='public'):
606
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
607 832 aaronmk
608
##### Database structure queries
609
610 2339 aaronmk
def table_cols(db, table, recover=None):
611
    return list(col_names(select(db, table, limit=0, order_by=None,
612
        recover=recover)))
613
614 2291 aaronmk
def pkey(db, table, recover=None):
615 832 aaronmk
    '''Assumed to be first column in table'''
616 2339 aaronmk
    return table_cols(db, table, recover)[0]
617 832 aaronmk
618 2340 aaronmk
not_null_col = 'not_null'
619
620
def table_not_null_col(db, table, recover=None):
621
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
622
    if not_null_col in table_cols(db, table, recover): return not_null_col
623
    else: return pkey(db, table, recover)
624
625 853 aaronmk
def index_cols(db, table, index):
626
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
627
    automatically created. When you don't know whether something is a UNIQUE
628
    constraint or a UNIQUE index, use this function.'''
629 1909 aaronmk
    module = util.root_module(db.db)
630
    if module == 'psycopg2':
631
        return list(values(run_query(db, '''\
632 853 aaronmk
SELECT attname
633 866 aaronmk
FROM
634
(
635
        SELECT attnum, attname
636
        FROM pg_index
637
        JOIN pg_class index ON index.oid = indexrelid
638
        JOIN pg_class table_ ON table_.oid = indrelid
639
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
640
        WHERE
641
            table_.relname = %(table)s
642
            AND index.relname = %(index)s
643
    UNION
644
        SELECT attnum, attname
645
        FROM
646
        (
647
            SELECT
648
                indrelid
649
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
650
                    AS indkey
651
            FROM pg_index
652
            JOIN pg_class index ON index.oid = indexrelid
653
            JOIN pg_class table_ ON table_.oid = indrelid
654
            WHERE
655
                table_.relname = %(table)s
656
                AND index.relname = %(index)s
657
        ) s
658
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
659
) s
660 853 aaronmk
ORDER BY attnum
661
''',
662 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
663
    else: raise NotImplementedError("Can't list index columns for "+module+
664
        ' database')
665 853 aaronmk
666 464 aaronmk
def constraint_cols(db, table, constraint):
667 1849 aaronmk
    module = util.root_module(db.db)
668 464 aaronmk
    if module == 'psycopg2':
669
        return list(values(run_query(db, '''\
670
SELECT attname
671
FROM pg_constraint
672
JOIN pg_class ON pg_class.oid = conrelid
673
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
674
WHERE
675
    relname = %(table)s
676
    AND conname = %(constraint)s
677
ORDER BY attnum
678
''',
679
            {'table': table, 'constraint': constraint})))
680
    else: raise NotImplementedError("Can't list constraint columns for "+module+
681
        ' database')
682
683 2096 aaronmk
row_num_col = '_row_num'
684
685 2086 aaronmk
def add_row_num(db, table):
686 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
687
    be the primary key.'''
688 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
689 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
690 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
691 2086 aaronmk
692 1968 aaronmk
def tables(db, schema='public', table_like='%'):
693 1849 aaronmk
    module = util.root_module(db.db)
694 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
695 832 aaronmk
    if module == 'psycopg2':
696 1968 aaronmk
        return values(run_query(db, '''\
697
SELECT tablename
698
FROM pg_tables
699
WHERE
700
    schemaname = %(schema)s
701
    AND tablename LIKE %(table_like)s
702
ORDER BY tablename
703
''',
704
            params, cacheable=True))
705
    elif module == 'MySQLdb':
706
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
707
            cacheable=True))
708 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
709 830 aaronmk
710 833 aaronmk
##### Database management
711
712 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
713
    '''For kw_args, see tables()'''
714
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
715 833 aaronmk
716 832 aaronmk
##### Heuristic queries
717
718 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
719 1554 aaronmk
    '''Recovers from errors.
720 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
721
    '''
722 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
723
724 471 aaronmk
    try:
725 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
726 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
727
            row_ct_ref[0] += cur.rowcount
728
        return value(cur)
729 471 aaronmk
    except DuplicateKeyException, e:
730 2104 aaronmk
        return value(select(db, table, [pkey_],
731 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
732 471 aaronmk
733 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
734 830 aaronmk
    '''Recovers from errors'''
735 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
736 14 aaronmk
    except StopIteration:
737 40 aaronmk
        if not create: raise
738 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
739 2078 aaronmk
740 2134 aaronmk
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
741 2279 aaronmk
    row_ct_ref=None):
742 2078 aaronmk
    '''Recovers from errors.
743
    Only works under PostgreSQL (uses INSERT RETURNING).
744 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
745
        tables to join with it using the main input table's pkey
746 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
747
        * out_table_col: sql_gen.Col|str
748 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
749 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
750 2078 aaronmk
    '''
751 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
752 2312 aaronmk
    for in_table_col in mapping.itervalues():
753
        assert isinstance(in_table_col, sql_gen.Col)
754
755 2329 aaronmk
    temp_prefix = out_table.name
756 2251 aaronmk
    pkeys_ref = [temp_prefix+'_pkeys']
757 2131 aaronmk
758 2132 aaronmk
    # Join together input tables
759 2131 aaronmk
    in_tables = in_tables[:] # don't modify input!
760
    in_tables0 = in_tables.pop(0) # first table is separate
761 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
762 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
763 2352 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
764 2278 aaronmk
        for v in in_tables]
765 2131 aaronmk
766 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
767 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
768 2142 aaronmk
769 2236 aaronmk
    pkeys = [in_pkey, out_pkey]
770
    pkeys_cols = [in_pkey_col, out_pkey_col]
771
772 2201 aaronmk
    pkeys_table_exists_ref = [False]
773
    def run_query_into_pkeys(query, params):
774
        if pkeys_table_exists_ref[0]:
775 2236 aaronmk
            insert_select(db, pkeys_ref[0], pkeys, query, params)
776 2201 aaronmk
        else:
777
            run_query_into(db, query, params, into_ref=pkeys_ref)
778
            pkeys_table_exists_ref[0] = True
779
780 2378 aaronmk
    conds = []
781 2233 aaronmk
    distinct_on = []
782 2325 aaronmk
    def mk_main_select(joins, cols):
783
        return mk_select(db, joins, cols, conds, distinct_on, limit=limit,
784
            start=start, default_table=in_tables0)
785 2132 aaronmk
786 2309 aaronmk
    def log_exc(e):
787
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
788 2358 aaronmk
    def ignore(in_col, value):
789 2365 aaronmk
        db.log_debug('Ignoring rows with '+str(in_col)+' = '+repr(value))
790 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
791
        assert cond not in conds # avoid infinite loops
792
        conds.append(cond)
793 2245 aaronmk
794 2206 aaronmk
    # Do inserts and selects
795 2257 aaronmk
    join_cols = {}
796 2251 aaronmk
    out_pkeys_ref = [temp_prefix+'_out_pkeys']
797 2252 aaronmk
    in_pkeys_ref = [temp_prefix+'_in_pkeys']
798 2206 aaronmk
    while True:
799 2303 aaronmk
        has_joins = join_cols != {}
800
801 2305 aaronmk
        # Prepare to insert new rows
802 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
803
        insert_args = dict(recover=True)
804 2303 aaronmk
        if has_joins:
805 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
806 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
807
                sql_gen.filter_out))
808
        else:
809
            insert_args.update(dict(returning=out_pkey, into_ref=out_pkeys_ref))
810 2303 aaronmk
811 2305 aaronmk
        db.log_debug('Inserting new rows')
812 2206 aaronmk
        try:
813
            cur = insert_select(db, out_table, mapping.keys(),
814 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
815 2357 aaronmk
            break # insert successful
816 2206 aaronmk
        except DuplicateKeyException, e:
817 2309 aaronmk
            log_exc(e)
818
819 2258 aaronmk
            old_join_cols = join_cols.copy()
820 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
821 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
822 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
823 2230 aaronmk
        except NullValueException, e:
824 2309 aaronmk
            log_exc(e)
825
826 2230 aaronmk
            out_col, = e.cols
827
            try: in_col = mapping[out_col]
828 2356 aaronmk
            except KeyError:
829
                db.log_debug('Missing mapping for NOT NULL '+out_col)
830
                limit = 0 # just create an empty pkeys table
831 2365 aaronmk
            else: ignore(in_col, None)
832 2243 aaronmk
        except FunctionValueException, e:
833 2309 aaronmk
            log_exc(e)
834
835 2344 aaronmk
            assert e.name == out_table.name
836 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
837 2358 aaronmk
            ignore(mapping[out_col], e.value)
838
        # after exception handled, rerun loop with additional constraints
839 2132 aaronmk
840 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
841
        row_ct_ref[0] += cur.rowcount
842
843
    if has_joins:
844
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
845
        db.log_debug('Getting output pkeys of existing/inserted rows')
846
        run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols,
847
            start=0))
848
    else:
849
        add_row_num(db, out_pkeys_ref[0]) # for joining with input pkeys
850
851
        db.log_debug('Getting input pkeys for rows in insert')
852
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
853
            into_ref=in_pkeys_ref)
854
        add_row_num(db, in_pkeys_ref[0]) # for joining with output pkeys
855
856
        db.log_debug('Joining together output and input pkeys')
857
        pkey_joins = [in_pkeys_ref[0], sql_gen.Join(out_pkeys_ref[0],
858
            {row_num_col: sql_gen.join_same_not_null})]
859
        run_query_into_pkeys(*mk_select(db, pkey_joins, pkeys, start=0))
860
861
    db.log_debug("Setting missing rows' pkeys to NULL")
862
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys_ref[0],
863
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
864
        # must use join_same_not_null or query will take forever
865
    run_query_into_pkeys(*mk_select(db, missing_rows_joins,
866
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)], start=0))
867
868 2268 aaronmk
    return sql_gen.Col(out_pkey, pkeys_ref[0])
869 2115 aaronmk
870
##### Data cleanup
871
872 2290 aaronmk
def cleanup_table(db, table, cols):
873 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
874
875 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
876 2115 aaronmk
    cols = map(esc_name_, cols)
877
878
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
879
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
880
            for col in cols))),
881
        dict(null0='', null1=r'\N'))