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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
36
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
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##### Warnings
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72
class DbWarning(UserWarning): pass
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##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
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def next_value(cur): return next_row(cur)[0]
92
93
def value(cur): return row(cur)[0]
94
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def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def check_name(name):
104
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
105
        +'" may contain only alphanumeric characters and _')
106
107
def esc_name_by_module(module, name, ignore_case=False):
108
    if module == 'psycopg2':
109
        if ignore_case:
110
            # Don't enclose in quotes because this disables case-insensitivity
111
            check_name(name)
112
            return name
113
        else: quote = '"'
114
    elif module == 'MySQLdb': quote = '`'
115
    else: raise NotImplementedError("Can't escape name for "+module+' database')
116
    return quote + name.replace(quote, '') + quote
117
118
def esc_name_by_engine(engine, name, **kw_args):
119
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
120
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def esc_name(db, name, **kw_args):
122
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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def qual_name(db, schema, table):
125
    def esc_name_(name): return esc_name(db, name)
126
    table = esc_name_(table)
127
    if schema != None: return esc_name_(schema)+'.'+table
128
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
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    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
136
    'PostgreSQL': ('psycopg2', {}),
137
}
138
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DatabaseErrors_set = set([DbException])
140
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
143
    DatabaseErrors_set.add(module.DatabaseError)
144
    global DatabaseErrors
145
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
148
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
156
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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168
    def __getattr__(self, name):
169
        if name == '__dict__': raise Exception('getting __dict__')
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        if name == 'db': return self._db()
171
        else: raise AttributeError()
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    def __getstate__(self):
174
        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
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        return state
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    def connected(self): return self.__db != None
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    def _db(self):
182
        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
187
            module = __import__(module_name)
188
            _add_module(module)
189
            for orig, new in mappings.iteritems():
190
                try: util.rename_key(db_config, orig, new)
191
                except KeyError: pass
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            # Connect
194
            self.__db = module.connect(**db_config)
195
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
198
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
200
                schemas_ = ''.join((esc_name(self, s)+', '
201
                    for s in schemas.split(',')))
202
                run_raw_query(self, "SELECT set_config('search_path', \
203
%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
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                self._cache_result()
227
                raise
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            # Fetch all rows so result will be cached
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            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
233
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
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                try: return self.iter.next()
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                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
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            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
269
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
276
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
281
        try:
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            # Get cursor
283
            if cacheable:
284
                query_lookup = _query_lookup(query, params)
285
                try:
286
                    cur = self.query_results[query_lookup]
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                    used_cache = True
288
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
296
                elif cacheable: cache_status = 'Cache miss'
297
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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301
        return cur
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303
    def is_cached(self, query, params=None):
304
        return _query_lookup(query, params) in self.query_results
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306
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
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        self._savepoint += 1
310
        try:
311
            try: return_val = func()
312
            finally:
313
                self._savepoint -= 1
314
                assert self._savepoint >= 0
315
        except:
316
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
317
            raise
318
        else:
319
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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323
    def do_autocommit(self):
324
        '''Autocommits if outside savepoint'''
325
        assert self._savepoint >= 0
326
        if self.autocommit and self._savepoint == 0:
327
            self.log_debug('Autocommiting')
328
            self.db.commit()
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connect = DbConn
331
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##### Querying
333
334 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
339
    module = util.root_module(db.db)
340
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
341
    else: raise NotImplementedError("Can't mogrify query for "+module+
342
        ' database')
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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348 1894 aaronmk
def run_query(db, query, params=None, recover=None, cacheable=False):
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    if recover == None: recover = False
350
351 2148 aaronmk
    try:
352
        def run(): return run_raw_query(db, query, params, cacheable)
353
        if recover and not db.is_cached(query, params):
354
            return with_savepoint(db, run)
355
        else: return run() # don't need savepoint if cached
356
    except Exception, e:
357
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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        match = re.search(r'duplicate key value violates unique constraint '
361 2368 aaronmk
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
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        if match:
363
            constraint, table = match.groups()
364
            try: cols = index_cols(db, table, constraint)
365
            except NotImplementedError: raise e
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            else: raise DuplicateKeyException(constraint, cols, e)
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        match = re.search(r'null value in column "(\w+?)" violates not-null '
369 2239 aaronmk
            r'constraint', msg)
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        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
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        match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
373
            r'|date/time field value out of range): "(.+?)"\n'
374 2368 aaronmk
            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
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        if match:
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            value, name = match.groups()
377
            raise FunctionValueException(name, strings.to_unicode(value), e)
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        match = re.search(r'relation "(\w+?)" already exists', msg)
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        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+?)" already exists', msg)
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        if match: raise DuplicateFunctionException(match.group(1), e)
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        raise # no specific exception raised
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##### Basic queries
388
389 2153 aaronmk
def next_version(name):
390
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
392 2153 aaronmk
    match = re.match(r'^v(\d+)_(.*)$', name)
393
    if match:
394
        version = int(match.group(1))+1
395
        name = match.group(2)
396
    return 'v'+str(version)+'_'+name
397
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def run_query_into(db, query, params, into_ref=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
400
    For params, see run_query().
401
    '''
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    if into_ref == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        kw_args['recover'] = True
405
        while True:
406
            try:
407 2194 aaronmk
                create_query = 'CREATE'
408
                if not db.debug: create_query += ' TEMP'
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                into = sql_gen.as_Table(into_ref[0]).to_str(db)
410
                create_query += ' TABLE '+into+' AS '+query
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412
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
414
            except DuplicateTableException, e:
415
                into_ref[0] = next_version(into_ref[0])
416
                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
419
420 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
421
422 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
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    start=None, order_by=order_by_pkey, default_table=None):
424 1981 aaronmk
    '''
425 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
426 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
427 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
429 2379 aaronmk
        * container can be any iterable type
430 2218 aaronmk
        * compare_left_side: Code|str (for col name)
431
        * compare_right_side: ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
433
        use all columns
434 2054 aaronmk
    @return tuple(query, params)
435 1981 aaronmk
    '''
436 2315 aaronmk
    # Parse tables param
437 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
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    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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    # Parse other params
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    if conds == None: conds = []
443
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
445 135 aaronmk
    assert limit == None or type(limit) == int
446 865 aaronmk
    assert start == None or type(start) == int
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    if order_by is order_by_pkey:
448
        if distinct_on != []: order_by = None
449
        else: order_by = pkey(db, table0, recover=True)
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    query = 'SELECT'
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453 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
454 2056 aaronmk
455 2200 aaronmk
    # DISTINCT ON columns
456 2233 aaronmk
    if distinct_on != []:
457 2200 aaronmk
        query += ' DISTINCT'
458 2254 aaronmk
        if distinct_on is not distinct_on_all:
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            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
460
461
    # Columns
462
    query += ' '
463 1135 aaronmk
    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
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466
    # Main table
467 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
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    # Add joins
470 2271 aaronmk
    left_table = table0
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    for join_ in tables:
472
        table = join_.table
473 2238 aaronmk
474 2343 aaronmk
        # Parse special values
475
        if join_.type_ is sql_gen.filter_out: # filter no match
476 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
477
                None))
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479 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
480 2122 aaronmk
481
        left_table = table
482
483 865 aaronmk
    missing = True
484 2376 aaronmk
    if conds != []:
485 2284 aaronmk
        query += ' WHERE '+(' AND '.join((sql_gen.as_ValueCond(r).to_str(db, l)
486 2376 aaronmk
            for l, r in conds)))
487 865 aaronmk
        missing = False
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    if order_by != None:
489 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
490 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
491
    if start != None:
492
        if start != 0: query += ' OFFSET '+str(start)
493
        missing = False
494
    if missing: warnings.warn(DbWarning(
495
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
496
497 2315 aaronmk
    return (query, [])
498 11 aaronmk
499 2054 aaronmk
def select(db, *args, **kw_args):
500
    '''For params, see mk_select() and run_query()'''
501
    recover = kw_args.pop('recover', None)
502
    cacheable = kw_args.pop('cacheable', True)
503
504
    query, params = mk_select(db, *args, **kw_args)
505
    return run_query(db, query, params, recover, cacheable)
506
507 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
508 2292 aaronmk
    returning=None, embeddable=False):
509 1960 aaronmk
    '''
510
    @param returning str|None An inserted column (such as pkey) to return
511 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
512 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
513
        query will be fully cached, not just if it raises an exception.
514 1960 aaronmk
    '''
515 2328 aaronmk
    table = sql_gen.as_Table(table)
516 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
517
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
518 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
519 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
520 2063 aaronmk
521
    # Build query
522 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
523 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
524 2063 aaronmk
    query += ' '+select_query
525
526
    if returning != None:
527 2327 aaronmk
        returning_name = copy.copy(returning)
528
        returning_name.table = None
529
        returning_name = returning_name.to_str(db)
530
        query += ' RETURNING '+returning_name
531 2063 aaronmk
532 2070 aaronmk
    if embeddable:
533 2327 aaronmk
        assert returning != None
534
535 2070 aaronmk
        # Create function
536 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
537 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
538 2189 aaronmk
        while True:
539
            try:
540 2327 aaronmk
                func_schema = None
541
                if not db.debug: func_schema = 'pg_temp'
542
                function = sql_gen.Table(function_name, func_schema).to_str(db)
543 2194 aaronmk
544 2189 aaronmk
                function_query = '''\
545
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
546 2070 aaronmk
    LANGUAGE sql
547
    AS $$'''+mogrify(db, query, params)+''';$$;
548
'''
549 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
550
                break # this version was successful
551
            except DuplicateFunctionException, e:
552
                function_name = next_version(function_name)
553
                # try again with next version of name
554 2070 aaronmk
555 2337 aaronmk
        # Return query that uses function
556
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
557
            [returning_name]) # AS clause requires function alias
558
        return mk_select(db, func_table, start=0, order_by=None)
559 2070 aaronmk
560 2066 aaronmk
    return (query, params)
561
562
def insert_select(db, *args, **kw_args):
563 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
564 2152 aaronmk
    @param into_ref List with name of temp table to place RETURNING values in
565 2072 aaronmk
    '''
566 2151 aaronmk
    into_ref = kw_args.pop('into_ref', None)
567
    if into_ref != None: kw_args['embeddable'] = True
568 2066 aaronmk
    recover = kw_args.pop('recover', None)
569
    cacheable = kw_args.pop('cacheable', True)
570
571
    query, params = mk_insert_select(db, *args, **kw_args)
572 2153 aaronmk
    return run_query_into(db, query, params, into_ref, recover=recover,
573
        cacheable=cacheable)
574 2063 aaronmk
575 2066 aaronmk
default = object() # tells insert() to use the default value for a column
576
577 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
578 2085 aaronmk
    '''For params, see insert_select()'''
579 1960 aaronmk
    if lists.is_seq(row): cols = None
580
    else:
581
        cols = row.keys()
582
        row = row.values()
583
    row = list(row) # ensure that "!= []" works
584
585 1961 aaronmk
    # Check for special values
586
    labels = []
587
    values = []
588
    for value in row:
589 2254 aaronmk
        if value is default: labels.append('DEFAULT')
590 1961 aaronmk
        else:
591
            labels.append('%s')
592
            values.append(value)
593
594
    # Build query
595 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
596
    else: query = None
597 1554 aaronmk
598 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
599 11 aaronmk
600 135 aaronmk
def last_insert_id(db):
601 1849 aaronmk
    module = util.root_module(db.db)
602 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
603
    elif module == 'MySQLdb': return db.insert_id()
604
    else: return None
605 13 aaronmk
606 1968 aaronmk
def truncate(db, table, schema='public'):
607
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
608 832 aaronmk
609
##### Database structure queries
610
611 2339 aaronmk
def table_cols(db, table, recover=None):
612
    return list(col_names(select(db, table, limit=0, order_by=None,
613
        recover=recover)))
614
615 2383 aaronmk
def mk_flatten_mapping(db, tables, flat_table):
616
    '''Creates a mapping from original column names (which may have collisions)
617
    to names that will be distinct among the given tables.
618
    This is meant to be used for several tables that are being joined together.
619
    @param flat_table The table for the new columns
620
    @return dict(orig_col=new_col, ...)
621
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
622
        * new_col: sql_gen.Col(orig_col_name, flat_table)
623
        * All mappings use the flat_table table so its name can easily be
624
          changed for all columns at once
625
    '''
626
    flatten_mapping = {}
627
    for table in tables:
628
        for col in table_cols(db, table):
629
            col = sql_gen.as_Col(col, table)
630
            flatten_mapping[col] = sql_gen.Col(str(col), flat_table)
631
    return flatten_mapping
632
633 2291 aaronmk
def pkey(db, table, recover=None):
634 832 aaronmk
    '''Assumed to be first column in table'''
635 2339 aaronmk
    return table_cols(db, table, recover)[0]
636 832 aaronmk
637 2340 aaronmk
not_null_col = 'not_null'
638
639
def table_not_null_col(db, table, recover=None):
640
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
641
    if not_null_col in table_cols(db, table, recover): return not_null_col
642
    else: return pkey(db, table, recover)
643
644 853 aaronmk
def index_cols(db, table, index):
645
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
646
    automatically created. When you don't know whether something is a UNIQUE
647
    constraint or a UNIQUE index, use this function.'''
648 1909 aaronmk
    module = util.root_module(db.db)
649
    if module == 'psycopg2':
650
        return list(values(run_query(db, '''\
651 853 aaronmk
SELECT attname
652 866 aaronmk
FROM
653
(
654
        SELECT attnum, attname
655
        FROM pg_index
656
        JOIN pg_class index ON index.oid = indexrelid
657
        JOIN pg_class table_ ON table_.oid = indrelid
658
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
659
        WHERE
660
            table_.relname = %(table)s
661
            AND index.relname = %(index)s
662
    UNION
663
        SELECT attnum, attname
664
        FROM
665
        (
666
            SELECT
667
                indrelid
668
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
669
                    AS indkey
670
            FROM pg_index
671
            JOIN pg_class index ON index.oid = indexrelid
672
            JOIN pg_class table_ ON table_.oid = indrelid
673
            WHERE
674
                table_.relname = %(table)s
675
                AND index.relname = %(index)s
676
        ) s
677
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
678
) s
679 853 aaronmk
ORDER BY attnum
680
''',
681 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
682
    else: raise NotImplementedError("Can't list index columns for "+module+
683
        ' database')
684 853 aaronmk
685 464 aaronmk
def constraint_cols(db, table, constraint):
686 1849 aaronmk
    module = util.root_module(db.db)
687 464 aaronmk
    if module == 'psycopg2':
688
        return list(values(run_query(db, '''\
689
SELECT attname
690
FROM pg_constraint
691
JOIN pg_class ON pg_class.oid = conrelid
692
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
693
WHERE
694
    relname = %(table)s
695
    AND conname = %(constraint)s
696
ORDER BY attnum
697
''',
698
            {'table': table, 'constraint': constraint})))
699
    else: raise NotImplementedError("Can't list constraint columns for "+module+
700
        ' database')
701
702 2096 aaronmk
row_num_col = '_row_num'
703
704 2086 aaronmk
def add_row_num(db, table):
705 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
706
    be the primary key.'''
707 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
708 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
709 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
710 2086 aaronmk
711 1968 aaronmk
def tables(db, schema='public', table_like='%'):
712 1849 aaronmk
    module = util.root_module(db.db)
713 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
714 832 aaronmk
    if module == 'psycopg2':
715 1968 aaronmk
        return values(run_query(db, '''\
716
SELECT tablename
717
FROM pg_tables
718
WHERE
719
    schemaname = %(schema)s
720
    AND tablename LIKE %(table_like)s
721
ORDER BY tablename
722
''',
723
            params, cacheable=True))
724
    elif module == 'MySQLdb':
725
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
726
            cacheable=True))
727 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
728 830 aaronmk
729 833 aaronmk
##### Database management
730
731 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
732
    '''For kw_args, see tables()'''
733
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
734 833 aaronmk
735 832 aaronmk
##### Heuristic queries
736
737 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
738 1554 aaronmk
    '''Recovers from errors.
739 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
740
    '''
741 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
742
743 471 aaronmk
    try:
744 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
745 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
746
            row_ct_ref[0] += cur.rowcount
747
        return value(cur)
748 471 aaronmk
    except DuplicateKeyException, e:
749 2104 aaronmk
        return value(select(db, table, [pkey_],
750 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
751 471 aaronmk
752 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
753 830 aaronmk
    '''Recovers from errors'''
754 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
755 14 aaronmk
    except StopIteration:
756 40 aaronmk
        if not create: raise
757 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
758 2078 aaronmk
759 2134 aaronmk
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
760 2279 aaronmk
    row_ct_ref=None):
761 2078 aaronmk
    '''Recovers from errors.
762
    Only works under PostgreSQL (uses INSERT RETURNING).
763 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
764
        tables to join with it using the main input table's pkey
765 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
766
        * out_table_col: sql_gen.Col|str
767 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
768 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
769 2078 aaronmk
    '''
770 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
771 2312 aaronmk
    for in_table_col in mapping.itervalues():
772
        assert isinstance(in_table_col, sql_gen.Col)
773
774 2329 aaronmk
    temp_prefix = out_table.name
775 2251 aaronmk
    pkeys_ref = [temp_prefix+'_pkeys']
776 2131 aaronmk
777 2382 aaronmk
    # Create input joins from list of input tables
778
    in_tables_ = in_tables[:] # don't modify input!
779
    in_tables0 = in_tables_.pop(0) # first table is separate
780 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
781 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
782 2352 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
783 2382 aaronmk
        for v in in_tables_]
784 2131 aaronmk
785 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
786 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
787 2142 aaronmk
788 2236 aaronmk
    pkeys = [in_pkey, out_pkey]
789
    pkeys_cols = [in_pkey_col, out_pkey_col]
790
791 2201 aaronmk
    pkeys_table_exists_ref = [False]
792
    def run_query_into_pkeys(query, params):
793
        if pkeys_table_exists_ref[0]:
794 2236 aaronmk
            insert_select(db, pkeys_ref[0], pkeys, query, params)
795 2201 aaronmk
        else:
796
            run_query_into(db, query, params, into_ref=pkeys_ref)
797
            pkeys_table_exists_ref[0] = True
798
799 2380 aaronmk
    conds = set()
800 2233 aaronmk
    distinct_on = []
801 2325 aaronmk
    def mk_main_select(joins, cols):
802
        return mk_select(db, joins, cols, conds, distinct_on, limit=limit,
803
            start=start, default_table=in_tables0)
804 2132 aaronmk
805 2309 aaronmk
    def log_exc(e):
806
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
807 2358 aaronmk
    def ignore(in_col, value):
808 2365 aaronmk
        db.log_debug('Ignoring rows with '+str(in_col)+' = '+repr(value))
809 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
810
        assert cond not in conds # avoid infinite loops
811 2380 aaronmk
        conds.add(cond)
812 2245 aaronmk
813 2206 aaronmk
    # Do inserts and selects
814 2257 aaronmk
    join_cols = {}
815 2251 aaronmk
    out_pkeys_ref = [temp_prefix+'_out_pkeys']
816 2252 aaronmk
    in_pkeys_ref = [temp_prefix+'_in_pkeys']
817 2206 aaronmk
    while True:
818 2303 aaronmk
        has_joins = join_cols != {}
819
820 2305 aaronmk
        # Prepare to insert new rows
821 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
822
        insert_args = dict(recover=True)
823 2303 aaronmk
        if has_joins:
824 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
825 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
826
                sql_gen.filter_out))
827
        else:
828
            insert_args.update(dict(returning=out_pkey, into_ref=out_pkeys_ref))
829 2303 aaronmk
830 2305 aaronmk
        db.log_debug('Inserting new rows')
831 2206 aaronmk
        try:
832
            cur = insert_select(db, out_table, mapping.keys(),
833 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
834 2357 aaronmk
            break # insert successful
835 2206 aaronmk
        except DuplicateKeyException, e:
836 2309 aaronmk
            log_exc(e)
837
838 2258 aaronmk
            old_join_cols = join_cols.copy()
839 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
840 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
841 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
842 2230 aaronmk
        except NullValueException, e:
843 2309 aaronmk
            log_exc(e)
844
845 2230 aaronmk
            out_col, = e.cols
846
            try: in_col = mapping[out_col]
847 2356 aaronmk
            except KeyError:
848
                db.log_debug('Missing mapping for NOT NULL '+out_col)
849
                limit = 0 # just create an empty pkeys table
850 2365 aaronmk
            else: ignore(in_col, None)
851 2243 aaronmk
        except FunctionValueException, e:
852 2309 aaronmk
            log_exc(e)
853
854 2344 aaronmk
            assert e.name == out_table.name
855 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
856 2358 aaronmk
            ignore(mapping[out_col], e.value)
857
        # after exception handled, rerun loop with additional constraints
858 2132 aaronmk
859 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
860
        row_ct_ref[0] += cur.rowcount
861
862
    if has_joins:
863
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
864
        db.log_debug('Getting output pkeys of existing/inserted rows')
865
        run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols,
866
            start=0))
867
    else:
868
        add_row_num(db, out_pkeys_ref[0]) # for joining with input pkeys
869
870
        db.log_debug('Getting input pkeys for rows in insert')
871
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
872
            into_ref=in_pkeys_ref)
873
        add_row_num(db, in_pkeys_ref[0]) # for joining with output pkeys
874
875
        db.log_debug('Joining together output and input pkeys')
876
        pkey_joins = [in_pkeys_ref[0], sql_gen.Join(out_pkeys_ref[0],
877
            {row_num_col: sql_gen.join_same_not_null})]
878
        run_query_into_pkeys(*mk_select(db, pkey_joins, pkeys, start=0))
879
880
    db.log_debug("Setting missing rows' pkeys to NULL")
881
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys_ref[0],
882
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
883
        # must use join_same_not_null or query will take forever
884
    run_query_into_pkeys(*mk_select(db, missing_rows_joins,
885
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)], start=0))
886
887 2268 aaronmk
    return sql_gen.Col(out_pkey, pkeys_ref[0])
888 2115 aaronmk
889
##### Data cleanup
890
891 2290 aaronmk
def cleanup_table(db, table, cols):
892 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
893
894 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
895 2115 aaronmk
    cols = map(esc_name_, cols)
896
897
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
898
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
899
            for col in cols))),
900
        dict(null0='', null1=r'\N'))