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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
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    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
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##### Warnings
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class DbWarning(UserWarning): pass
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##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
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def next_value(cur): return next_row(cur)[0]
92
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def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
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def check_name(name):
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    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
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def esc_name_by_module(module, name, ignore_case=False):
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    if module == 'psycopg2' or module == None:
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        if ignore_case:
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            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
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        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
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def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
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    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
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DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
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    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
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        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
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        if name == 'db': return self._db()
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        else: raise AttributeError()
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    def __getstate__(self):
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        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
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        return state
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    def connected(self): return self.__db != None
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    def _db(self):
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        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
189
            module = __import__(module_name)
190
            _add_module(module)
191
            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
194
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            # Connect
196
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
200
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
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                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
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                run_raw_query(self, "SELECT set_config('search_path', \
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%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
228
                self._cache_result()
229
                raise
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            # Fetch all rows so result will be cached
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            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
235
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
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                try: return self.iter.next()
262
                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
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            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
278
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
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        try:
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            # Get cursor
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            if cacheable:
286
                query_lookup = _query_lookup(query, params)
287
                try:
288
                    cur = self.query_results[query_lookup]
289
                    used_cache = True
290
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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293
            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
298
                elif cacheable: cache_status = 'Cache miss'
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                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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303
        return cur
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305
    def is_cached(self, query, params=None):
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        return _query_lookup(query, params) in self.query_results
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308
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
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        self._savepoint += 1
312
        try:
313
            try: return_val = func()
314
            finally:
315
                self._savepoint -= 1
316
                assert self._savepoint >= 0
317
        except:
318
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
319
            raise
320
        else:
321
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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325
    def do_autocommit(self):
326
        '''Autocommits if outside savepoint'''
327
        assert self._savepoint >= 0
328
        if self.autocommit and self._savepoint == 0:
329
            self.log_debug('Autocommiting')
330
            self.db.commit()
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connect = DbConn
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##### Querying
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336 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
341
    module = util.root_module(db.db)
342
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
343
    else: raise NotImplementedError("Can't mogrify query for "+module+
344
        ' database')
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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def run_query(db, query, params=None, recover=None, cacheable=False):
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    if recover == None: recover = False
352
353 2148 aaronmk
    try:
354
        def run(): return run_raw_query(db, query, params, cacheable)
355
        if recover and not db.is_cached(query, params):
356
            return with_savepoint(db, run)
357
        else: return run() # don't need savepoint if cached
358
    except Exception, e:
359
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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        match = re.search(r'duplicate key value violates unique constraint '
363 2368 aaronmk
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
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        if match:
365
            constraint, table = match.groups()
366
            try: cols = index_cols(db, table, constraint)
367
            except NotImplementedError: raise e
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            else: raise DuplicateKeyException(constraint, cols, e)
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        match = re.search(r'null value in column "(\w+?)" violates not-null '
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            r'constraint', msg)
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        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
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        match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
375
            r'|date/time field value out of range): "(.+?)"\n'
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            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
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        if match:
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            value, name = match.groups()
379
            raise FunctionValueException(name, strings.to_unicode(value), e)
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        match = re.search(r'relation "(\w+?)" already exists', msg)
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        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+?)" already exists', msg)
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        if match: raise DuplicateFunctionException(match.group(1), e)
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        raise # no specific exception raised
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##### Basic queries
390
391 2153 aaronmk
def next_version(name):
392
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
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    match = re.match(r'^v(\d+)_(.*)$', name)
395
    if match:
396
        version = int(match.group(1))+1
397
        name = match.group(2)
398
    return 'v'+str(version)+'_'+name
399
400 2386 aaronmk
def run_query_into(db, query, params, into=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
402
    For params, see run_query().
403
    '''
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    if into == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        assert isinstance(into, sql_gen.Table)
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        kw_args['recover'] = True
409
        while True:
410
            try:
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                create_query = 'CREATE'
412
                if not db.debug: create_query += ' TEMP'
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                create_query += ' TABLE '+into.to_str(db)+' AS '+query
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415
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
417
            except DuplicateTableException, e:
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                into.name = next_version(into.name)
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                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
422
423 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
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425 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
426 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
427 1981 aaronmk
    '''
428 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
429 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
430 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
432 2379 aaronmk
        * container can be any iterable type
433 2399 aaronmk
        * compare_left_side: sql_gen.Code|str (for col name)
434
        * compare_right_side: sql_gen.ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
436
        use all columns
437 2054 aaronmk
    @return tuple(query, params)
438 1981 aaronmk
    '''
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    # Parse tables param
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    if not lists.is_seq(tables): tables = [tables]
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    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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    # Parse other params
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    if conds == None: conds = []
446
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
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    assert limit == None or type(limit) == int
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    assert start == None or type(start) == int
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    if order_by is order_by_pkey:
451
        if distinct_on != []: order_by = None
452
        else: order_by = pkey(db, table0, recover=True)
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    query = 'SELECT'
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456 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
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    # DISTINCT ON columns
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    if distinct_on != []:
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        query += ' DISTINCT'
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        if distinct_on is not distinct_on_all:
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            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
463
464
    # Columns
465
    query += ' '
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    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
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469
    # Main table
470 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
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    # Add joins
473 2271 aaronmk
    left_table = table0
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    for join_ in tables:
475
        table = join_.table
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477 2343 aaronmk
        # Parse special values
478
        if join_.type_ is sql_gen.filter_out: # filter no match
479 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
480
                None))
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482 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
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484
        left_table = table
485
486 865 aaronmk
    missing = True
487 2376 aaronmk
    if conds != []:
488 2399 aaronmk
        query += ' WHERE '+(' AND '.join((sql_gen.ColValueCond(l, r).to_str(db)
489 2376 aaronmk
            for l, r in conds)))
490 865 aaronmk
        missing = False
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    if order_by != None:
492 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
493 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
494
    if start != None:
495
        if start != 0: query += ' OFFSET '+str(start)
496
        missing = False
497
    if missing: warnings.warn(DbWarning(
498
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
499
500 2315 aaronmk
    return (query, [])
501 11 aaronmk
502 2054 aaronmk
def select(db, *args, **kw_args):
503
    '''For params, see mk_select() and run_query()'''
504
    recover = kw_args.pop('recover', None)
505
    cacheable = kw_args.pop('cacheable', True)
506
507
    query, params = mk_select(db, *args, **kw_args)
508
    return run_query(db, query, params, recover, cacheable)
509
510 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
511 2292 aaronmk
    returning=None, embeddable=False):
512 1960 aaronmk
    '''
513
    @param returning str|None An inserted column (such as pkey) to return
514 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
515 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
516
        query will be fully cached, not just if it raises an exception.
517 1960 aaronmk
    '''
518 2328 aaronmk
    table = sql_gen.as_Table(table)
519 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
520
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
521 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
522 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
523 2063 aaronmk
524
    # Build query
525 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
526 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
527 2063 aaronmk
    query += ' '+select_query
528
529
    if returning != None:
530 2327 aaronmk
        returning_name = copy.copy(returning)
531
        returning_name.table = None
532
        returning_name = returning_name.to_str(db)
533
        query += ' RETURNING '+returning_name
534 2063 aaronmk
535 2070 aaronmk
    if embeddable:
536 2327 aaronmk
        assert returning != None
537
538 2070 aaronmk
        # Create function
539 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
540 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
541 2189 aaronmk
        while True:
542
            try:
543 2327 aaronmk
                func_schema = None
544
                if not db.debug: func_schema = 'pg_temp'
545
                function = sql_gen.Table(function_name, func_schema).to_str(db)
546 2194 aaronmk
547 2189 aaronmk
                function_query = '''\
548
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
549 2070 aaronmk
    LANGUAGE sql
550
    AS $$'''+mogrify(db, query, params)+''';$$;
551
'''
552 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
553
                break # this version was successful
554
            except DuplicateFunctionException, e:
555
                function_name = next_version(function_name)
556
                # try again with next version of name
557 2070 aaronmk
558 2337 aaronmk
        # Return query that uses function
559
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
560
            [returning_name]) # AS clause requires function alias
561
        return mk_select(db, func_table, start=0, order_by=None)
562 2070 aaronmk
563 2066 aaronmk
    return (query, params)
564
565
def insert_select(db, *args, **kw_args):
566 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
567 2386 aaronmk
    @param into sql_gen.Table with suggested name of temp table to put RETURNING
568
        values in
569 2072 aaronmk
    '''
570 2386 aaronmk
    into = kw_args.pop('into', None)
571
    if into != None: kw_args['embeddable'] = True
572 2066 aaronmk
    recover = kw_args.pop('recover', None)
573
    cacheable = kw_args.pop('cacheable', True)
574
575
    query, params = mk_insert_select(db, *args, **kw_args)
576 2386 aaronmk
    return run_query_into(db, query, params, into, recover=recover,
577 2153 aaronmk
        cacheable=cacheable)
578 2063 aaronmk
579 2066 aaronmk
default = object() # tells insert() to use the default value for a column
580
581 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
582 2085 aaronmk
    '''For params, see insert_select()'''
583 1960 aaronmk
    if lists.is_seq(row): cols = None
584
    else:
585
        cols = row.keys()
586
        row = row.values()
587
    row = list(row) # ensure that "!= []" works
588
589 1961 aaronmk
    # Check for special values
590
    labels = []
591
    values = []
592
    for value in row:
593 2254 aaronmk
        if value is default: labels.append('DEFAULT')
594 1961 aaronmk
        else:
595
            labels.append('%s')
596
            values.append(value)
597
598
    # Build query
599 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
600
    else: query = None
601 1554 aaronmk
602 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
603 11 aaronmk
604 2402 aaronmk
def mk_update(db, table, changes=None, cond=None):
605
    '''
606
    @param changes [(col, new_value),...]
607
        * container can be any iterable type
608
        * col: sql_gen.Code|str (for col name)
609
        * new_value: sql_gen.Code|literal value
610
    @param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
611
    @return str query
612
    '''
613
    query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
614 2405 aaronmk
    query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
615 2402 aaronmk
        +sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
616
    if cond != None: query += ' WHERE '+cond.to_str(db)
617
618
    return query
619
620
def update(db, *args, **kw_args):
621
    '''For params, see mk_update() and run_query()'''
622
    recover = kw_args.pop('recover', None)
623
624
    return run_query(db, mk_update(db, *args, **kw_args), [], recover)
625
626 135 aaronmk
def last_insert_id(db):
627 1849 aaronmk
    module = util.root_module(db.db)
628 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
629
    elif module == 'MySQLdb': return db.insert_id()
630
    else: return None
631 13 aaronmk
632 1968 aaronmk
def truncate(db, table, schema='public'):
633
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
634 832 aaronmk
635
##### Database structure queries
636
637 2339 aaronmk
def table_cols(db, table, recover=None):
638
    return list(col_names(select(db, table, limit=0, order_by=None,
639
        recover=recover)))
640
641 2394 aaronmk
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
642 2383 aaronmk
    '''Creates a mapping from original column names (which may have collisions)
643
    to names that will be distinct among the given tables.
644
    This is meant to be used for several tables that are being joined together.
645 2392 aaronmk
    @param into The table for the new columns
646 2394 aaronmk
    @param preserve [sql_gen.Col...] Columns not to rename. Note that these
647
        columns will be included in the mapping even if they are not in cols.
648
        The tables of the provided Col objects will be changed to into, so make
649
        copies of them if you want to keep the original tables.
650
    @param as_items Whether to return a list of dict items instead of a dict
651 2383 aaronmk
    @return dict(orig_col=new_col, ...)
652
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
653 2392 aaronmk
        * new_col: sql_gen.Col(orig_col_name, into)
654
        * All mappings use the into table so its name can easily be
655 2383 aaronmk
          changed for all columns at once
656
    '''
657 2394 aaronmk
    items = []
658 2389 aaronmk
    for col in preserve:
659 2390 aaronmk
        orig_col = copy.copy(col)
660 2392 aaronmk
        col.table = into
661 2394 aaronmk
        items.append((orig_col, col))
662
    preserve = set(preserve)
663
    for col in cols:
664 2397 aaronmk
        if col not in preserve:
665
            items.append((col, sql_gen.Col(clean_name(str(col)), into)))
666 2394 aaronmk
667
    if not as_items: items = dict(items)
668
    return items
669 2383 aaronmk
670 2393 aaronmk
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
671 2391 aaronmk
    '''For params, see mk_flatten_mapping()
672
    @return See return value of mk_flatten_mapping()
673
    '''
674 2394 aaronmk
    items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
675
    cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
676 2391 aaronmk
    run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
677 2392 aaronmk
        into=into)
678 2394 aaronmk
    return dict(items)
679 2391 aaronmk
680 2291 aaronmk
def pkey(db, table, recover=None):
681 832 aaronmk
    '''Assumed to be first column in table'''
682 2339 aaronmk
    return table_cols(db, table, recover)[0]
683 832 aaronmk
684 2340 aaronmk
not_null_col = 'not_null'
685
686
def table_not_null_col(db, table, recover=None):
687
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
688
    if not_null_col in table_cols(db, table, recover): return not_null_col
689
    else: return pkey(db, table, recover)
690
691 853 aaronmk
def index_cols(db, table, index):
692
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
693
    automatically created. When you don't know whether something is a UNIQUE
694
    constraint or a UNIQUE index, use this function.'''
695 1909 aaronmk
    module = util.root_module(db.db)
696
    if module == 'psycopg2':
697
        return list(values(run_query(db, '''\
698 853 aaronmk
SELECT attname
699 866 aaronmk
FROM
700
(
701
        SELECT attnum, attname
702
        FROM pg_index
703
        JOIN pg_class index ON index.oid = indexrelid
704
        JOIN pg_class table_ ON table_.oid = indrelid
705
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
706
        WHERE
707
            table_.relname = %(table)s
708
            AND index.relname = %(index)s
709
    UNION
710
        SELECT attnum, attname
711
        FROM
712
        (
713
            SELECT
714
                indrelid
715
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
716
                    AS indkey
717
            FROM pg_index
718
            JOIN pg_class index ON index.oid = indexrelid
719
            JOIN pg_class table_ ON table_.oid = indrelid
720
            WHERE
721
                table_.relname = %(table)s
722
                AND index.relname = %(index)s
723
        ) s
724
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
725
) s
726 853 aaronmk
ORDER BY attnum
727
''',
728 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
729
    else: raise NotImplementedError("Can't list index columns for "+module+
730
        ' database')
731 853 aaronmk
732 464 aaronmk
def constraint_cols(db, table, constraint):
733 1849 aaronmk
    module = util.root_module(db.db)
734 464 aaronmk
    if module == 'psycopg2':
735
        return list(values(run_query(db, '''\
736
SELECT attname
737
FROM pg_constraint
738
JOIN pg_class ON pg_class.oid = conrelid
739
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
740
WHERE
741
    relname = %(table)s
742
    AND conname = %(constraint)s
743
ORDER BY attnum
744
''',
745
            {'table': table, 'constraint': constraint})))
746
    else: raise NotImplementedError("Can't list constraint columns for "+module+
747
        ' database')
748
749 2096 aaronmk
row_num_col = '_row_num'
750
751 2408 aaronmk
def index_col(db, col):
752
    '''Adds an index on a column if it doesn't already exist.'''
753
    assert sql_gen.is_table_col(col)
754
755
    table = col.table
756
    index = sql_gen.as_Table(clean_name(str(col)))
757
    col = sql_gen.to_name_only_col(col)
758
    try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
759
        +' ('+col.to_str(db)+')', recover=True)
760
    except DuplicateTableException: pass # index already existed
761
762 2406 aaronmk
def index_pkey(db, table, recover=None):
763
    '''Makes the first column in a table the primary key.
764
    @pre The table must not already have a primary key.
765
    '''
766
    table = sql_gen.as_Table(table)
767
768
    index = sql_gen.as_Table(table.name+'_pkey')
769
    col = sql_gen.to_name_only_col(pkey(db, table, recover))
770
    run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
771
        +index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover)
772
773 2086 aaronmk
def add_row_num(db, table):
774 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
775
    be the primary key.'''
776 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
777 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
778 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
779 2086 aaronmk
780 1968 aaronmk
def tables(db, schema='public', table_like='%'):
781 1849 aaronmk
    module = util.root_module(db.db)
782 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
783 832 aaronmk
    if module == 'psycopg2':
784 1968 aaronmk
        return values(run_query(db, '''\
785
SELECT tablename
786
FROM pg_tables
787
WHERE
788
    schemaname = %(schema)s
789
    AND tablename LIKE %(table_like)s
790
ORDER BY tablename
791
''',
792
            params, cacheable=True))
793
    elif module == 'MySQLdb':
794
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
795
            cacheable=True))
796 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
797 830 aaronmk
798 833 aaronmk
##### Database management
799
800 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
801
    '''For kw_args, see tables()'''
802
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
803 833 aaronmk
804 832 aaronmk
##### Heuristic queries
805
806 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
807 1554 aaronmk
    '''Recovers from errors.
808 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
809
    '''
810 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
811
812 471 aaronmk
    try:
813 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
814 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
815
            row_ct_ref[0] += cur.rowcount
816
        return value(cur)
817 471 aaronmk
    except DuplicateKeyException, e:
818 2104 aaronmk
        return value(select(db, table, [pkey_],
819 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
820 471 aaronmk
821 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
822 830 aaronmk
    '''Recovers from errors'''
823 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
824 14 aaronmk
    except StopIteration:
825 40 aaronmk
        if not create: raise
826 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
827 2078 aaronmk
828 2134 aaronmk
def put_table(db, out_table, in_tables, mapping, limit=None, start=0,
829 2279 aaronmk
    row_ct_ref=None):
830 2078 aaronmk
    '''Recovers from errors.
831
    Only works under PostgreSQL (uses INSERT RETURNING).
832 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
833
        tables to join with it using the main input table's pkey
834 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
835
        * out_table_col: sql_gen.Col|str
836 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
837 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
838 2078 aaronmk
    '''
839 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
840 2312 aaronmk
    for in_table_col in mapping.itervalues():
841
        assert isinstance(in_table_col, sql_gen.Col)
842
843 2329 aaronmk
    temp_prefix = out_table.name
844 2387 aaronmk
    pkeys = sql_gen.Table(temp_prefix+'_pkeys')
845 2131 aaronmk
846 2382 aaronmk
    # Create input joins from list of input tables
847
    in_tables_ = in_tables[:] # don't modify input!
848
    in_tables0 = in_tables_.pop(0) # first table is separate
849 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
850 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
851 2352 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
852 2382 aaronmk
        for v in in_tables_]
853 2131 aaronmk
854 2395 aaronmk
    db.log_debug('Joining together input tables')
855
    # Place in new table for speed and so don't modify input if values edited
856
    in_table = sql_gen.Table(temp_prefix+'_in')
857
    flatten_cols = filter(sql_gen.is_table_col, mapping.values())
858
    mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
859
        flatten_cols, preserve=[in_pkey_col], start=0))
860
    input_joins = [in_table]
861
862 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
863 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
864 2142 aaronmk
865 2387 aaronmk
    pkeys_names = [in_pkey, out_pkey]
866 2236 aaronmk
    pkeys_cols = [in_pkey_col, out_pkey_col]
867
868 2201 aaronmk
    pkeys_table_exists_ref = [False]
869
    def run_query_into_pkeys(query, params):
870
        if pkeys_table_exists_ref[0]:
871 2387 aaronmk
            insert_select(db, pkeys, pkeys_names, query, params)
872 2201 aaronmk
        else:
873 2387 aaronmk
            run_query_into(db, query, params, into=pkeys)
874 2201 aaronmk
            pkeys_table_exists_ref[0] = True
875
876 2380 aaronmk
    conds = set()
877 2233 aaronmk
    distinct_on = []
878 2325 aaronmk
    def mk_main_select(joins, cols):
879
        return mk_select(db, joins, cols, conds, distinct_on, limit=limit,
880 2395 aaronmk
            start=start)
881 2132 aaronmk
882 2309 aaronmk
    def log_exc(e):
883
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
884 2409 aaronmk
    def ignore(in_col, value):
885
        in_col_str = str(in_col)
886
        db.log_debug('Adding index on '+in_col_str+' to enable fast filtering')
887
        index_col(db, in_col)
888
        db.log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
889 2403 aaronmk
    def remove_rows(in_col, value):
890 2409 aaronmk
        ignore(in_col, value)
891 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
892
        assert cond not in conds # avoid infinite loops
893 2380 aaronmk
        conds.add(cond)
894 2403 aaronmk
    def invalid2null(in_col, value):
895 2409 aaronmk
        ignore(in_col, value)
896 2403 aaronmk
        update(db, in_table, [(in_col, None)],
897
            sql_gen.ColValueCond(in_col, value))
898 2245 aaronmk
899 2206 aaronmk
    # Do inserts and selects
900 2257 aaronmk
    join_cols = {}
901 2404 aaronmk
    insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
902
    insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
903 2206 aaronmk
    while True:
904 2303 aaronmk
        has_joins = join_cols != {}
905
906 2305 aaronmk
        # Prepare to insert new rows
907 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
908 2403 aaronmk
        insert_args = dict(recover=True, cacheable=False)
909 2303 aaronmk
        if has_joins:
910 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
911 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
912
                sql_gen.filter_out))
913
        else:
914 2404 aaronmk
            insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
915 2303 aaronmk
916 2305 aaronmk
        db.log_debug('Inserting new rows')
917 2206 aaronmk
        try:
918
            cur = insert_select(db, out_table, mapping.keys(),
919 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
920 2357 aaronmk
            break # insert successful
921 2206 aaronmk
        except DuplicateKeyException, e:
922 2309 aaronmk
            log_exc(e)
923
924 2258 aaronmk
            old_join_cols = join_cols.copy()
925 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
926 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
927 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
928 2230 aaronmk
        except NullValueException, e:
929 2309 aaronmk
            log_exc(e)
930
931 2230 aaronmk
            out_col, = e.cols
932
            try: in_col = mapping[out_col]
933 2356 aaronmk
            except KeyError:
934
                db.log_debug('Missing mapping for NOT NULL '+out_col)
935
                limit = 0 # just create an empty pkeys table
936 2403 aaronmk
            else: remove_rows(in_col, None)
937 2243 aaronmk
        except FunctionValueException, e:
938 2309 aaronmk
            log_exc(e)
939
940 2344 aaronmk
            assert e.name == out_table.name
941 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
942 2403 aaronmk
            invalid2null(mapping[out_col], e.value)
943 2358 aaronmk
        # after exception handled, rerun loop with additional constraints
944 2132 aaronmk
945 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
946
        row_ct_ref[0] += cur.rowcount
947
948
    if has_joins:
949
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
950
        db.log_debug('Getting output pkeys of existing/inserted rows')
951 2387 aaronmk
        run_query_into_pkeys(*mk_select(db, select_joins, pkeys_cols, start=0))
952 2357 aaronmk
    else:
953 2404 aaronmk
        add_row_num(db, insert_out_pkeys) # for joining with input pkeys
954 2357 aaronmk
955
        db.log_debug('Getting input pkeys for rows in insert')
956
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
957 2404 aaronmk
            into=insert_in_pkeys)
958
        add_row_num(db, insert_in_pkeys) # for joining with output pkeys
959 2357 aaronmk
960
        db.log_debug('Joining together output and input pkeys')
961 2404 aaronmk
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
962 2357 aaronmk
            {row_num_col: sql_gen.join_same_not_null})]
963 2387 aaronmk
        run_query_into_pkeys(*mk_select(db, pkey_joins, pkeys_names, start=0))
964 2357 aaronmk
965 2407 aaronmk
    db.log_debug("Adding pkey on returned pkeys table to enable fast joins")
966
    index_pkey(db, pkeys)
967
968 2357 aaronmk
    db.log_debug("Setting missing rows' pkeys to NULL")
969 2387 aaronmk
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
970 2357 aaronmk
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
971
        # must use join_same_not_null or query will take forever
972
    run_query_into_pkeys(*mk_select(db, missing_rows_joins,
973
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)], start=0))
974
975 2387 aaronmk
    return sql_gen.Col(out_pkey, pkeys)
976 2115 aaronmk
977
##### Data cleanup
978
979 2290 aaronmk
def cleanup_table(db, table, cols):
980 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
981
982 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
983 2115 aaronmk
    cols = map(esc_name_, cols)
984
985
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
986
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
987
            for col in cols))),
988
        dict(null0='', null1=r'\N'))