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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
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    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
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##### Warnings
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72
class DbWarning(UserWarning): pass
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##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
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def next_value(cur): return next_row(cur)[0]
92
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def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
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def check_name(name):
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    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
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def esc_name_by_module(module, name, ignore_case=False):
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    if module == 'psycopg2' or module == None:
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        if ignore_case:
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            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
115
        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
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def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
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    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
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DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
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    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
158
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
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        if name == 'db': return self._db()
173
        else: raise AttributeError()
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    def __getstate__(self):
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        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
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        return state
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    def connected(self): return self.__db != None
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    def _db(self):
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        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
189
            module = __import__(module_name)
190
            _add_module(module)
191
            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
194
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            # Connect
196
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
200
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
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                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
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                run_raw_query(self, "SELECT set_config('search_path', \
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%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
228
                self._cache_result()
229
                raise
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            # Fetch all rows so result will be cached
231
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
235
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
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                try: return self.iter.next()
262
                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
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            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False):
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        '''Translates known DB errors to typed exceptions:
278
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
283
        try:
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            # Get cursor
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            if cacheable:
286
                query_lookup = _query_lookup(query, params)
287
                try:
288
                    cur = self.query_results[query_lookup]
289
                    used_cache = True
290
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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293
            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
298
                elif cacheable: cache_status = 'Cache miss'
299
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '
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                    +strings.one_line(str(get_cur_query(cur, query, params))))
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303
        return cur
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305
    def is_cached(self, query, params=None):
306
        return _query_lookup(query, params) in self.query_results
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308
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
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        self._savepoint += 1
312
        try:
313
            try: return_val = func()
314
            finally:
315
                self._savepoint -= 1
316
                assert self._savepoint >= 0
317
        except:
318
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
319
            raise
320
        else:
321
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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325
    def do_autocommit(self):
326
        '''Autocommits if outside savepoint'''
327
        assert self._savepoint >= 0
328
        if self.autocommit and self._savepoint == 0:
329
            self.log_debug('Autocommiting')
330
            self.db.commit()
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connect = DbConn
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##### Querying
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336 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
341
    module = util.root_module(db.db)
342
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
343
    else: raise NotImplementedError("Can't mogrify query for "+module+
344
        ' database')
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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def run_query(db, query, params=None, recover=None, cacheable=False):
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    if recover == None: recover = False
352
353 2148 aaronmk
    try:
354
        def run(): return run_raw_query(db, query, params, cacheable)
355
        if recover and not db.is_cached(query, params):
356
            return with_savepoint(db, run)
357
        else: return run() # don't need savepoint if cached
358
    except Exception, e:
359
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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        match = re.search(r'duplicate key value violates unique constraint '
363 2368 aaronmk
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
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        if match:
365
            constraint, table = match.groups()
366
            try: cols = index_cols(db, table, constraint)
367
            except NotImplementedError: raise e
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            else: raise DuplicateKeyException(constraint, cols, e)
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        match = re.search(r'null value in column "(\w+?)" violates not-null '
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            r'constraint', msg)
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        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
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        match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
375
            r'|date/time field value out of range): "(.+?)"\n'
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            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
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        if match:
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            value, name = match.groups()
379
            raise FunctionValueException(name, strings.to_unicode(value), e)
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        match = re.search(r'relation "(\w+?)" already exists', msg)
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        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+?)" already exists', msg)
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        if match: raise DuplicateFunctionException(match.group(1), e)
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        raise # no specific exception raised
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##### Basic queries
390
391 2153 aaronmk
def next_version(name):
392
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
394 2153 aaronmk
    match = re.match(r'^v(\d+)_(.*)$', name)
395
    if match:
396
        version = int(match.group(1))+1
397
        name = match.group(2)
398
    return 'v'+str(version)+'_'+name
399
400 2386 aaronmk
def run_query_into(db, query, params, into=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
402
    For params, see run_query().
403
    '''
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    if into == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        assert isinstance(into, sql_gen.Table)
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        kw_args['recover'] = True
409
        while True:
410
            try:
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                create_query = 'CREATE'
412
                if not db.debug: create_query += ' TEMP'
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                create_query += ' TABLE '+into.to_str(db)+' AS '+query
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415
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
417
            except DuplicateTableException, e:
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                into.name = next_version(into.name)
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                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
422
423 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
424
425 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
426 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
427 1981 aaronmk
    '''
428 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
429 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
430 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
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        * container can be any iterable type
433 2399 aaronmk
        * compare_left_side: sql_gen.Code|str (for col name)
434
        * compare_right_side: sql_gen.ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
436
        use all columns
437 2054 aaronmk
    @return tuple(query, params)
438 1981 aaronmk
    '''
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    # Parse tables param
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    if not lists.is_seq(tables): tables = [tables]
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    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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    # Parse other params
445 2376 aaronmk
    if conds == None: conds = []
446
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
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    assert limit == None or type(limit) == int
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    assert start == None or type(start) == int
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    if order_by is order_by_pkey:
451
        if distinct_on != []: order_by = None
452
        else: order_by = pkey(db, table0, recover=True)
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454 2315 aaronmk
    query = 'SELECT'
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456 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
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    # DISTINCT ON columns
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    if distinct_on != []:
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        query += ' DISTINCT'
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        if distinct_on is not distinct_on_all:
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            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
463
464
    # Columns
465
    query += ' '
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    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
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469
    # Main table
470 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
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    # Add joins
473 2271 aaronmk
    left_table = table0
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    for join_ in tables:
475
        table = join_.table
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477 2343 aaronmk
        # Parse special values
478
        if join_.type_ is sql_gen.filter_out: # filter no match
479 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
480
                None))
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482 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
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484
        left_table = table
485
486 865 aaronmk
    missing = True
487 2376 aaronmk
    if conds != []:
488 2410 aaronmk
        query += ' WHERE '+(' AND '.join(('('+sql_gen.ColValueCond(l, r)
489
            .to_str(db)+')' for l, r in conds)))
490 865 aaronmk
        missing = False
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    if order_by != None:
492 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
493 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
494
    if start != None:
495
        if start != 0: query += ' OFFSET '+str(start)
496
        missing = False
497
    if missing: warnings.warn(DbWarning(
498
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
499
500 2315 aaronmk
    return (query, [])
501 11 aaronmk
502 2054 aaronmk
def select(db, *args, **kw_args):
503
    '''For params, see mk_select() and run_query()'''
504
    recover = kw_args.pop('recover', None)
505
    cacheable = kw_args.pop('cacheable', True)
506
507
    query, params = mk_select(db, *args, **kw_args)
508
    return run_query(db, query, params, recover, cacheable)
509
510 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
511 2292 aaronmk
    returning=None, embeddable=False):
512 1960 aaronmk
    '''
513
    @param returning str|None An inserted column (such as pkey) to return
514 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
515 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
516
        query will be fully cached, not just if it raises an exception.
517 1960 aaronmk
    '''
518 2328 aaronmk
    table = sql_gen.as_Table(table)
519 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
520
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
521 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
522 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
523 2063 aaronmk
524
    # Build query
525 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
526 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
527 2063 aaronmk
    query += ' '+select_query
528
529
    if returning != None:
530 2327 aaronmk
        returning_name = copy.copy(returning)
531
        returning_name.table = None
532
        returning_name = returning_name.to_str(db)
533
        query += ' RETURNING '+returning_name
534 2063 aaronmk
535 2070 aaronmk
    if embeddable:
536 2327 aaronmk
        assert returning != None
537
538 2070 aaronmk
        # Create function
539 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
540 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
541 2189 aaronmk
        while True:
542
            try:
543 2327 aaronmk
                func_schema = None
544
                if not db.debug: func_schema = 'pg_temp'
545
                function = sql_gen.Table(function_name, func_schema).to_str(db)
546 2194 aaronmk
547 2189 aaronmk
                function_query = '''\
548
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
549 2070 aaronmk
    LANGUAGE sql
550
    AS $$'''+mogrify(db, query, params)+''';$$;
551
'''
552 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
553
                break # this version was successful
554
            except DuplicateFunctionException, e:
555
                function_name = next_version(function_name)
556
                # try again with next version of name
557 2070 aaronmk
558 2337 aaronmk
        # Return query that uses function
559
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
560
            [returning_name]) # AS clause requires function alias
561
        return mk_select(db, func_table, start=0, order_by=None)
562 2070 aaronmk
563 2066 aaronmk
    return (query, params)
564
565
def insert_select(db, *args, **kw_args):
566 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
567 2386 aaronmk
    @param into sql_gen.Table with suggested name of temp table to put RETURNING
568
        values in
569 2072 aaronmk
    '''
570 2386 aaronmk
    into = kw_args.pop('into', None)
571
    if into != None: kw_args['embeddable'] = True
572 2066 aaronmk
    recover = kw_args.pop('recover', None)
573
    cacheable = kw_args.pop('cacheable', True)
574
575
    query, params = mk_insert_select(db, *args, **kw_args)
576 2386 aaronmk
    return run_query_into(db, query, params, into, recover=recover,
577 2153 aaronmk
        cacheable=cacheable)
578 2063 aaronmk
579 2066 aaronmk
default = object() # tells insert() to use the default value for a column
580
581 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
582 2085 aaronmk
    '''For params, see insert_select()'''
583 1960 aaronmk
    if lists.is_seq(row): cols = None
584
    else:
585
        cols = row.keys()
586
        row = row.values()
587
    row = list(row) # ensure that "!= []" works
588
589 1961 aaronmk
    # Check for special values
590
    labels = []
591
    values = []
592
    for value in row:
593 2254 aaronmk
        if value is default: labels.append('DEFAULT')
594 1961 aaronmk
        else:
595
            labels.append('%s')
596
            values.append(value)
597
598
    # Build query
599 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
600
    else: query = None
601 1554 aaronmk
602 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
603 11 aaronmk
604 2402 aaronmk
def mk_update(db, table, changes=None, cond=None):
605
    '''
606
    @param changes [(col, new_value),...]
607
        * container can be any iterable type
608
        * col: sql_gen.Code|str (for col name)
609
        * new_value: sql_gen.Code|literal value
610
    @param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
611
    @return str query
612
    '''
613
    query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
614 2405 aaronmk
    query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
615 2402 aaronmk
        +sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
616
    if cond != None: query += ' WHERE '+cond.to_str(db)
617
618
    return query
619
620
def update(db, *args, **kw_args):
621
    '''For params, see mk_update() and run_query()'''
622
    recover = kw_args.pop('recover', None)
623
624
    return run_query(db, mk_update(db, *args, **kw_args), [], recover)
625
626 135 aaronmk
def last_insert_id(db):
627 1849 aaronmk
    module = util.root_module(db.db)
628 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
629
    elif module == 'MySQLdb': return db.insert_id()
630
    else: return None
631 13 aaronmk
632 1968 aaronmk
def truncate(db, table, schema='public'):
633
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
634 832 aaronmk
635 2394 aaronmk
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
636 2383 aaronmk
    '''Creates a mapping from original column names (which may have collisions)
637 2415 aaronmk
    to names that will be distinct among the columns' tables.
638 2383 aaronmk
    This is meant to be used for several tables that are being joined together.
639 2415 aaronmk
    @param cols The columns to combine. Duplicates will be removed.
640
    @param into The table for the new columns.
641 2394 aaronmk
    @param preserve [sql_gen.Col...] Columns not to rename. Note that these
642
        columns will be included in the mapping even if they are not in cols.
643
        The tables of the provided Col objects will be changed to into, so make
644
        copies of them if you want to keep the original tables.
645
    @param as_items Whether to return a list of dict items instead of a dict
646 2383 aaronmk
    @return dict(orig_col=new_col, ...)
647
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
648 2392 aaronmk
        * new_col: sql_gen.Col(orig_col_name, into)
649
        * All mappings use the into table so its name can easily be
650 2383 aaronmk
          changed for all columns at once
651
    '''
652 2415 aaronmk
    cols = lists.uniqify(cols)
653
654 2394 aaronmk
    items = []
655 2389 aaronmk
    for col in preserve:
656 2390 aaronmk
        orig_col = copy.copy(col)
657 2392 aaronmk
        col.table = into
658 2394 aaronmk
        items.append((orig_col, col))
659
    preserve = set(preserve)
660
    for col in cols:
661 2397 aaronmk
        if col not in preserve:
662
            items.append((col, sql_gen.Col(clean_name(str(col)), into)))
663 2394 aaronmk
664
    if not as_items: items = dict(items)
665
    return items
666 2383 aaronmk
667 2393 aaronmk
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
668 2391 aaronmk
    '''For params, see mk_flatten_mapping()
669
    @return See return value of mk_flatten_mapping()
670
    '''
671 2394 aaronmk
    items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
672
    cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
673 2391 aaronmk
    run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
674 2392 aaronmk
        into=into)
675 2394 aaronmk
    return dict(items)
676 2391 aaronmk
677 2414 aaronmk
##### Database structure queries
678
679
def table_cols(db, table, recover=None):
680
    return list(col_names(select(db, table, limit=0, order_by=None,
681
        recover=recover)))
682
683 2291 aaronmk
def pkey(db, table, recover=None):
684 832 aaronmk
    '''Assumed to be first column in table'''
685 2339 aaronmk
    return table_cols(db, table, recover)[0]
686 832 aaronmk
687 2340 aaronmk
not_null_col = 'not_null'
688
689
def table_not_null_col(db, table, recover=None):
690
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
691
    if not_null_col in table_cols(db, table, recover): return not_null_col
692
    else: return pkey(db, table, recover)
693
694 853 aaronmk
def index_cols(db, table, index):
695
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
696
    automatically created. When you don't know whether something is a UNIQUE
697
    constraint or a UNIQUE index, use this function.'''
698 1909 aaronmk
    module = util.root_module(db.db)
699
    if module == 'psycopg2':
700
        return list(values(run_query(db, '''\
701 853 aaronmk
SELECT attname
702 866 aaronmk
FROM
703
(
704
        SELECT attnum, attname
705
        FROM pg_index
706
        JOIN pg_class index ON index.oid = indexrelid
707
        JOIN pg_class table_ ON table_.oid = indrelid
708
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
709
        WHERE
710
            table_.relname = %(table)s
711
            AND index.relname = %(index)s
712
    UNION
713
        SELECT attnum, attname
714
        FROM
715
        (
716
            SELECT
717
                indrelid
718
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
719
                    AS indkey
720
            FROM pg_index
721
            JOIN pg_class index ON index.oid = indexrelid
722
            JOIN pg_class table_ ON table_.oid = indrelid
723
            WHERE
724
                table_.relname = %(table)s
725
                AND index.relname = %(index)s
726
        ) s
727
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
728
) s
729 853 aaronmk
ORDER BY attnum
730
''',
731 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
732
    else: raise NotImplementedError("Can't list index columns for "+module+
733
        ' database')
734 853 aaronmk
735 464 aaronmk
def constraint_cols(db, table, constraint):
736 1849 aaronmk
    module = util.root_module(db.db)
737 464 aaronmk
    if module == 'psycopg2':
738
        return list(values(run_query(db, '''\
739
SELECT attname
740
FROM pg_constraint
741
JOIN pg_class ON pg_class.oid = conrelid
742
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
743
WHERE
744
    relname = %(table)s
745
    AND conname = %(constraint)s
746
ORDER BY attnum
747
''',
748
            {'table': table, 'constraint': constraint})))
749
    else: raise NotImplementedError("Can't list constraint columns for "+module+
750
        ' database')
751
752 2096 aaronmk
row_num_col = '_row_num'
753
754 2408 aaronmk
def index_col(db, col):
755
    '''Adds an index on a column if it doesn't already exist.'''
756
    assert sql_gen.is_table_col(col)
757
758
    table = col.table
759
    index = sql_gen.as_Table(clean_name(str(col)))
760
    col = sql_gen.to_name_only_col(col)
761
    try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
762 2411 aaronmk
        +' ('+col.to_str(db)+')', recover=True, cacheable=True)
763 2408 aaronmk
    except DuplicateTableException: pass # index already existed
764
765 2406 aaronmk
def index_pkey(db, table, recover=None):
766
    '''Makes the first column in a table the primary key.
767
    @pre The table must not already have a primary key.
768
    '''
769
    table = sql_gen.as_Table(table)
770
771
    index = sql_gen.as_Table(table.name+'_pkey')
772
    col = sql_gen.to_name_only_col(pkey(db, table, recover))
773
    run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
774
        +index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover)
775
776 2086 aaronmk
def add_row_num(db, table):
777 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
778
    be the primary key.'''
779 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
780 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
781 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
782 2086 aaronmk
783 1968 aaronmk
def tables(db, schema='public', table_like='%'):
784 1849 aaronmk
    module = util.root_module(db.db)
785 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
786 832 aaronmk
    if module == 'psycopg2':
787 1968 aaronmk
        return values(run_query(db, '''\
788
SELECT tablename
789
FROM pg_tables
790
WHERE
791
    schemaname = %(schema)s
792
    AND tablename LIKE %(table_like)s
793
ORDER BY tablename
794
''',
795
            params, cacheable=True))
796
    elif module == 'MySQLdb':
797
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
798
            cacheable=True))
799 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
800 830 aaronmk
801 833 aaronmk
##### Database management
802
803 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
804
    '''For kw_args, see tables()'''
805
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
806 833 aaronmk
807 832 aaronmk
##### Heuristic queries
808
809 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
810 1554 aaronmk
    '''Recovers from errors.
811 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
812
    '''
813 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
814
815 471 aaronmk
    try:
816 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
817 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
818
            row_ct_ref[0] += cur.rowcount
819
        return value(cur)
820 471 aaronmk
    except DuplicateKeyException, e:
821 2104 aaronmk
        return value(select(db, table, [pkey_],
822 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
823 471 aaronmk
824 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
825 830 aaronmk
    '''Recovers from errors'''
826 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
827 14 aaronmk
    except StopIteration:
828 40 aaronmk
        if not create: raise
829 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
830 2078 aaronmk
831 2416 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None):
832 2078 aaronmk
    '''Recovers from errors.
833
    Only works under PostgreSQL (uses INSERT RETURNING).
834 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
835
        tables to join with it using the main input table's pkey
836 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
837
        * out_table_col: sql_gen.Col|str
838 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
839 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
840 2078 aaronmk
    '''
841 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
842 2312 aaronmk
    for in_table_col in mapping.itervalues():
843
        assert isinstance(in_table_col, sql_gen.Col)
844
845 2329 aaronmk
    temp_prefix = out_table.name
846 2387 aaronmk
    pkeys = sql_gen.Table(temp_prefix+'_pkeys')
847 2131 aaronmk
848 2382 aaronmk
    # Create input joins from list of input tables
849
    in_tables_ = in_tables[:] # don't modify input!
850
    in_tables0 = in_tables_.pop(0) # first table is separate
851 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
852 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
853 2352 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
854 2382 aaronmk
        for v in in_tables_]
855 2131 aaronmk
856 2395 aaronmk
    db.log_debug('Joining together input tables')
857
    # Place in new table for speed and so don't modify input if values edited
858
    in_table = sql_gen.Table(temp_prefix+'_in')
859
    flatten_cols = filter(sql_gen.is_table_col, mapping.values())
860
    mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
861
        flatten_cols, preserve=[in_pkey_col], start=0))
862
    input_joins = [in_table]
863
864 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
865 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
866 2142 aaronmk
867 2387 aaronmk
    pkeys_names = [in_pkey, out_pkey]
868 2236 aaronmk
    pkeys_cols = [in_pkey_col, out_pkey_col]
869
870 2201 aaronmk
    pkeys_table_exists_ref = [False]
871 2420 aaronmk
    def insert_into_pkeys(joins, cols):
872
        query, params = mk_select(db, joins, cols, order_by=None, start=0)
873 2201 aaronmk
        if pkeys_table_exists_ref[0]:
874 2387 aaronmk
            insert_select(db, pkeys, pkeys_names, query, params)
875 2201 aaronmk
        else:
876 2387 aaronmk
            run_query_into(db, query, params, into=pkeys)
877 2201 aaronmk
            pkeys_table_exists_ref[0] = True
878
879 2416 aaronmk
    limit = None
880 2380 aaronmk
    conds = set()
881 2233 aaronmk
    distinct_on = []
882 2325 aaronmk
    def mk_main_select(joins, cols):
883
        return mk_select(db, joins, cols, conds, distinct_on, limit=limit,
884 2416 aaronmk
            start=0)
885 2132 aaronmk
886 2309 aaronmk
    def log_exc(e):
887
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
888 2409 aaronmk
    def ignore(in_col, value):
889
        in_col_str = str(in_col)
890
        db.log_debug('Adding index on '+in_col_str+' to enable fast filtering')
891
        index_col(db, in_col)
892
        db.log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
893 2403 aaronmk
    def remove_rows(in_col, value):
894 2409 aaronmk
        ignore(in_col, value)
895 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
896
        assert cond not in conds # avoid infinite loops
897 2380 aaronmk
        conds.add(cond)
898 2403 aaronmk
    def invalid2null(in_col, value):
899 2409 aaronmk
        ignore(in_col, value)
900 2403 aaronmk
        update(db, in_table, [(in_col, None)],
901
            sql_gen.ColValueCond(in_col, value))
902 2245 aaronmk
903 2206 aaronmk
    # Do inserts and selects
904 2257 aaronmk
    join_cols = {}
905 2404 aaronmk
    insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
906
    insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
907 2206 aaronmk
    while True:
908 2303 aaronmk
        has_joins = join_cols != {}
909
910 2305 aaronmk
        # Prepare to insert new rows
911 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
912 2403 aaronmk
        insert_args = dict(recover=True, cacheable=False)
913 2303 aaronmk
        if has_joins:
914 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
915 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
916
                sql_gen.filter_out))
917
        else:
918 2404 aaronmk
            insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
919 2303 aaronmk
920 2305 aaronmk
        db.log_debug('Inserting new rows')
921 2206 aaronmk
        try:
922
            cur = insert_select(db, out_table, mapping.keys(),
923 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
924 2357 aaronmk
            break # insert successful
925 2206 aaronmk
        except DuplicateKeyException, e:
926 2309 aaronmk
            log_exc(e)
927
928 2258 aaronmk
            old_join_cols = join_cols.copy()
929 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
930 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
931 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
932 2230 aaronmk
        except NullValueException, e:
933 2309 aaronmk
            log_exc(e)
934
935 2230 aaronmk
            out_col, = e.cols
936
            try: in_col = mapping[out_col]
937 2356 aaronmk
            except KeyError:
938
                db.log_debug('Missing mapping for NOT NULL '+out_col)
939
                limit = 0 # just create an empty pkeys table
940 2403 aaronmk
            else: remove_rows(in_col, None)
941 2243 aaronmk
        except FunctionValueException, e:
942 2309 aaronmk
            log_exc(e)
943
944 2344 aaronmk
            assert e.name == out_table.name
945 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
946 2403 aaronmk
            invalid2null(mapping[out_col], e.value)
947 2358 aaronmk
        # after exception handled, rerun loop with additional constraints
948 2132 aaronmk
949 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
950
        row_ct_ref[0] += cur.rowcount
951
952
    if has_joins:
953
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
954
        db.log_debug('Getting output pkeys of existing/inserted rows')
955 2420 aaronmk
        insert_into_pkeys(select_joins, pkeys_cols)
956 2357 aaronmk
    else:
957 2404 aaronmk
        add_row_num(db, insert_out_pkeys) # for joining with input pkeys
958 2357 aaronmk
959
        db.log_debug('Getting input pkeys for rows in insert')
960
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
961 2404 aaronmk
            into=insert_in_pkeys)
962
        add_row_num(db, insert_in_pkeys) # for joining with output pkeys
963 2357 aaronmk
964
        db.log_debug('Joining together output and input pkeys')
965 2404 aaronmk
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
966 2357 aaronmk
            {row_num_col: sql_gen.join_same_not_null})]
967 2420 aaronmk
        insert_into_pkeys(pkey_joins, pkeys_names)
968 2357 aaronmk
969 2413 aaronmk
    db.log_debug('Adding pkey on returned pkeys table to enable fast joins')
970 2407 aaronmk
    index_pkey(db, pkeys)
971
972 2357 aaronmk
    db.log_debug("Setting missing rows' pkeys to NULL")
973 2387 aaronmk
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
974 2357 aaronmk
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
975
        # must use join_same_not_null or query will take forever
976 2420 aaronmk
    insert_into_pkeys(missing_rows_joins,
977
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)])
978 2357 aaronmk
979 2387 aaronmk
    return sql_gen.Col(out_pkey, pkeys)
980 2115 aaronmk
981
##### Data cleanup
982
983 2290 aaronmk
def cleanup_table(db, table, cols):
984 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
985
986 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
987 2115 aaronmk
    cols = map(esc_name_, cols)
988
989
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
990
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
991
            for col in cols))),
992
        dict(null0='', null1=r'\N'))