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11
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aaronmk
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# Database access
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2 |
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3 |
1869
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import copy
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4 |
2127
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import operator
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11
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import re
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6 |
865
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import warnings
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7 |
11
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aaronmk
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8 |
300
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import exc
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9 |
1909
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import dicts
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10 |
1893
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aaronmk
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import iters
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11 |
1960
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aaronmk
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import lists
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12 |
1889
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aaronmk
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from Proxy import Proxy
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13 |
1872
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aaronmk
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import rand
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14 |
2217
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import sql_gen
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15 |
862
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import strings
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131
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import util
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11
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aaronmk
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832
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aaronmk
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##### Exceptions
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19 |
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20 |
2170
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def get_cur_query(cur, input_query=None, input_params=None):
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21 |
2168
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raw_query = None
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22 |
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if hasattr(cur, 'query'): raw_query = cur.query
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23 |
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elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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24 |
2170
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aaronmk
|
|
25 |
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if raw_query != None: return raw_query
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26 |
2371
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aaronmk
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else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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27 |
14
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aaronmk
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28 |
2170
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aaronmk
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def _add_cursor_info(e, *args, **kw_args):
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29 |
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'''For params, see get_cur_query()'''
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30 |
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exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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31 |
135
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aaronmk
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32 |
300
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aaronmk
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class DbException(exc.ExceptionWithCause):
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33 |
14
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aaronmk
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def __init__(self, msg, cause=None, cur=None):
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34 |
2145
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aaronmk
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exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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35 |
14
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aaronmk
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if cur != None: _add_cursor_info(self, cur)
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36 |
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37 |
2143
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aaronmk
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class ExceptionWithName(DbException):
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38 |
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def __init__(self, name, cause=None):
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39 |
2145
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aaronmk
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DbException.__init__(self, 'for name: '+str(name), cause)
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40 |
2143
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aaronmk
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self.name = name
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41 |
360
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aaronmk
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42 |
2240
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aaronmk
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class ExceptionWithNameValue(DbException):
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43 |
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def __init__(self, name, value, cause=None):
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44 |
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DbException.__init__(self,
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45 |
2369
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'for name: '+str(name)+'; value: '+repr(value), cause)
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2240
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self.name = name
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self.value = value
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48 |
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2306
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aaronmk
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class ConstraintException(DbException):
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50 |
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def __init__(self, name, cols, cause=None):
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51 |
2345
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aaronmk
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DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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52 |
2307
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aaronmk
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+(', '.join(cols)), cause)
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53 |
2306
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aaronmk
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self.name = name
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468
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aaronmk
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self.cols = cols
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55 |
11
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aaronmk
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2143
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aaronmk
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class NameException(DbException): pass
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57 |
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58 |
2306
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aaronmk
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class DuplicateKeyException(ConstraintException): pass
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59 |
13
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aaronmk
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|
60 |
2306
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aaronmk
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class NullValueException(ConstraintException): pass
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61 |
13
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aaronmk
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2240
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aaronmk
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class FunctionValueException(ExceptionWithNameValue): pass
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63 |
2239
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aaronmk
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64 |
2143
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aaronmk
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class DuplicateTableException(ExceptionWithName): pass
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65 |
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2188
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aaronmk
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class DuplicateFunctionException(ExceptionWithName): pass
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67 |
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89
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aaronmk
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class EmptyRowException(DbException): pass
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69 |
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865
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aaronmk
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##### Warnings
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class DbWarning(UserWarning): pass
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1930
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aaronmk
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##### Result retrieval
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def col_names(cur): return (col[0] for col in cur.description)
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def rows(cur): return iter(lambda: cur.fetchone(), None)
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def consume_rows(cur):
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'''Used to fetch all rows so result will be cached'''
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iters.consume_iter(rows(cur))
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83 |
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def next_row(cur): return rows(cur).next()
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def row(cur):
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row_ = next_row(cur)
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consume_rows(cur)
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return row_
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90 |
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def next_value(cur): return next_row(cur)[0]
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def value(cur): return row(cur)[0]
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def values(cur): return iters.func_iter(lambda: next_value(cur))
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def value_or_none(cur):
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try: return value(cur)
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except StopIteration: return None
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100 |
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101 |
2101
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aaronmk
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##### Input validation
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102 |
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103 |
2396
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aaronmk
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def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
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104 |
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105 |
2101
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aaronmk
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def check_name(name):
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if re.search(r'\W', name) != None: raise NameException('Name "'+name
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+'" may contain only alphanumeric characters and _')
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108 |
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def esc_name_by_module(module, name, ignore_case=False):
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110 |
2388
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aaronmk
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if module == 'psycopg2' or module == None:
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111 |
2101
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aaronmk
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if ignore_case:
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112 |
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# Don't enclose in quotes because this disables case-insensitivity
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113 |
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check_name(name)
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return name
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else: quote = '"'
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elif module == 'MySQLdb': quote = '`'
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else: raise NotImplementedError("Can't escape name for "+module+' database')
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return quote + name.replace(quote, '') + quote
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119 |
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120 |
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def esc_name_by_engine(engine, name, **kw_args):
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121 |
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return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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122 |
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123 |
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def esc_name(db, name, **kw_args):
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return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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125 |
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126 |
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def qual_name(db, schema, table):
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def esc_name_(name): return esc_name(db, name)
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table = esc_name_(table)
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if schema != None: return esc_name_(schema)+'.'+table
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130 |
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else: return table
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131 |
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132 |
1869
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aaronmk
|
##### Database connections
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133 |
1849
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aaronmk
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134 |
2097
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aaronmk
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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135 |
1926
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aaronmk
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136 |
1869
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aaronmk
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db_engines = {
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137 |
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'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
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138 |
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'PostgreSQL': ('psycopg2', {}),
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139 |
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}
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140 |
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DatabaseErrors_set = set([DbException])
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142 |
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DatabaseErrors = tuple(DatabaseErrors_set)
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143 |
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144 |
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def _add_module(module):
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DatabaseErrors_set.add(module.DatabaseError)
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146 |
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global DatabaseErrors
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147 |
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DatabaseErrors = tuple(DatabaseErrors_set)
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148 |
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149 |
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def db_config_str(db_config):
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150 |
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return db_config['engine']+' database '+db_config['database']
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151 |
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152 |
1909
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aaronmk
|
def _query_lookup(query, params): return (query, dicts.make_hashable(params))
|
153 |
1894
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aaronmk
|
|
154 |
2448
|
aaronmk
|
log_debug_none = lambda msg, level=2: None
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155 |
1901
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aaronmk
|
|
156 |
1849
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aaronmk
|
class DbConn:
|
157 |
2190
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aaronmk
|
def __init__(self, db_config, serializable=True, autocommit=False,
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158 |
|
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caching=True, log_debug=log_debug_none):
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159 |
1869
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aaronmk
|
self.db_config = db_config
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160 |
|
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self.serializable = serializable
|
161 |
2190
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aaronmk
|
self.autocommit = autocommit
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162 |
|
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self.caching = caching
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163 |
1901
|
aaronmk
|
self.log_debug = log_debug
|
164 |
2193
|
aaronmk
|
self.debug = log_debug != log_debug_none
|
165 |
1869
|
aaronmk
|
|
166 |
|
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self.__db = None
|
167 |
1889
|
aaronmk
|
self.query_results = {}
|
168 |
2139
|
aaronmk
|
self._savepoint = 0
|
169 |
1869
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aaronmk
|
|
170 |
|
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def __getattr__(self, name):
|
171 |
|
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if name == '__dict__': raise Exception('getting __dict__')
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172 |
|
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if name == 'db': return self._db()
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173 |
|
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else: raise AttributeError()
|
174 |
|
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|
175 |
|
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def __getstate__(self):
|
176 |
|
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state = copy.copy(self.__dict__) # shallow copy
|
177 |
1915
|
aaronmk
|
state['log_debug'] = None # don't pickle the debug callback
|
178 |
1869
|
aaronmk
|
state['_DbConn__db'] = None # don't pickle the connection
|
179 |
|
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return state
|
180 |
|
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|
181 |
2165
|
aaronmk
|
def connected(self): return self.__db != None
|
182 |
|
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|
183 |
1869
|
aaronmk
|
def _db(self):
|
184 |
|
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if self.__db == None:
|
185 |
|
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# Process db_config
|
186 |
|
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db_config = self.db_config.copy() # don't modify input!
|
187 |
2097
|
aaronmk
|
schemas = db_config.pop('schemas', None)
|
188 |
1869
|
aaronmk
|
module_name, mappings = db_engines[db_config.pop('engine')]
|
189 |
|
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module = __import__(module_name)
|
190 |
|
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_add_module(module)
|
191 |
|
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for orig, new in mappings.iteritems():
|
192 |
|
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try: util.rename_key(db_config, orig, new)
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193 |
|
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except KeyError: pass
|
194 |
|
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|
195 |
|
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# Connect
|
196 |
|
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self.__db = module.connect(**db_config)
|
197 |
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|
198 |
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# Configure connection
|
199 |
2234
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aaronmk
|
if self.serializable and not self.autocommit: run_raw_query(self,
|
200 |
|
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'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
|
201 |
2101
|
aaronmk
|
if schemas != None:
|
202 |
|
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schemas_ = ''.join((esc_name(self, s)+', '
|
203 |
|
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for s in schemas.split(',')))
|
204 |
|
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run_raw_query(self, "SELECT set_config('search_path', \
|
205 |
|
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%s || current_setting('search_path'), false)", [schemas_])
|
206 |
1869
|
aaronmk
|
|
207 |
|
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return self.__db
|
208 |
1889
|
aaronmk
|
|
209 |
1891
|
aaronmk
|
class DbCursor(Proxy):
|
210 |
1927
|
aaronmk
|
def __init__(self, outer):
|
211 |
1891
|
aaronmk
|
Proxy.__init__(self, outer.db.cursor())
|
212 |
2191
|
aaronmk
|
self.outer = outer
|
213 |
1927
|
aaronmk
|
self.query_results = outer.query_results
|
214 |
1894
|
aaronmk
|
self.query_lookup = None
|
215 |
1891
|
aaronmk
|
self.result = []
|
216 |
1889
|
aaronmk
|
|
217 |
1894
|
aaronmk
|
def execute(self, query, params=None):
|
218 |
1930
|
aaronmk
|
self._is_insert = query.upper().find('INSERT') >= 0
|
219 |
1894
|
aaronmk
|
self.query_lookup = _query_lookup(query, params)
|
220 |
2148
|
aaronmk
|
try:
|
221 |
2191
|
aaronmk
|
try:
|
222 |
|
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return_value = self.inner.execute(query, params)
|
223 |
|
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self.outer.do_autocommit()
|
224 |
2148
|
aaronmk
|
finally: self.query = get_cur_query(self.inner)
|
225 |
1904
|
aaronmk
|
except Exception, e:
|
226 |
2170
|
aaronmk
|
_add_cursor_info(e, self, query, params)
|
227 |
1904
|
aaronmk
|
self.result = e # cache the exception as the result
|
228 |
|
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self._cache_result()
|
229 |
|
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raise
|
230 |
1930
|
aaronmk
|
# Fetch all rows so result will be cached
|
231 |
|
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if self.rowcount == 0 and not self._is_insert: consume_rows(self)
|
232 |
1894
|
aaronmk
|
return return_value
|
233 |
|
|
|
234 |
1891
|
aaronmk
|
def fetchone(self):
|
235 |
|
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row = self.inner.fetchone()
|
236 |
1899
|
aaronmk
|
if row != None: self.result.append(row)
|
237 |
|
|
# otherwise, fetched all rows
|
238 |
1904
|
aaronmk
|
else: self._cache_result()
|
239 |
|
|
return row
|
240 |
|
|
|
241 |
|
|
def _cache_result(self):
|
242 |
1906
|
aaronmk
|
# For inserts, only cache exceptions since inserts are not
|
243 |
|
|
# idempotent, but an invalid insert will always be invalid
|
244 |
1930
|
aaronmk
|
if self.query_results != None and (not self._is_insert
|
245 |
1906
|
aaronmk
|
or isinstance(self.result, Exception)):
|
246 |
|
|
|
247 |
1894
|
aaronmk
|
assert self.query_lookup != None
|
248 |
1916
|
aaronmk
|
self.query_results[self.query_lookup] = self.CacheCursor(
|
249 |
|
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util.dict_subset(dicts.AttrsDictView(self),
|
250 |
|
|
['query', 'result', 'rowcount', 'description']))
|
251 |
1906
|
aaronmk
|
|
252 |
1916
|
aaronmk
|
class CacheCursor:
|
253 |
|
|
def __init__(self, cached_result): self.__dict__ = cached_result
|
254 |
|
|
|
255 |
1927
|
aaronmk
|
def execute(self, *args, **kw_args):
|
256 |
1916
|
aaronmk
|
if isinstance(self.result, Exception): raise self.result
|
257 |
|
|
# otherwise, result is a rows list
|
258 |
|
|
self.iter = iter(self.result)
|
259 |
|
|
|
260 |
|
|
def fetchone(self):
|
261 |
|
|
try: return self.iter.next()
|
262 |
|
|
except StopIteration: return None
|
263 |
1891
|
aaronmk
|
|
264 |
2212
|
aaronmk
|
def esc_value(self, value):
|
265 |
2215
|
aaronmk
|
module = util.root_module(self.db)
|
266 |
2374
|
aaronmk
|
if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
|
267 |
2212
|
aaronmk
|
elif module == 'MySQLdb':
|
268 |
|
|
import _mysql
|
269 |
2374
|
aaronmk
|
str_ = _mysql.escape_string(value)
|
270 |
2212
|
aaronmk
|
else: raise NotImplementedError("Can't escape value for "+module
|
271 |
|
|
+' database')
|
272 |
2374
|
aaronmk
|
return strings.to_unicode(str_)
|
273 |
2212
|
aaronmk
|
|
274 |
2347
|
aaronmk
|
def esc_name(self, name): return esc_name(self, name) # calls global func
|
275 |
|
|
|
276 |
2445
|
aaronmk
|
def run_query(self, query, params=None, cacheable=False, log_level=2,
|
277 |
2464
|
aaronmk
|
debug_msg_ref=None):
|
278 |
2445
|
aaronmk
|
'''
|
279 |
2464
|
aaronmk
|
@param log_ignore_excs The log_level will be increased by 2 if the query
|
280 |
|
|
throws one of these exceptions.
|
281 |
2445
|
aaronmk
|
'''
|
282 |
2167
|
aaronmk
|
assert query != None
|
283 |
|
|
|
284 |
2047
|
aaronmk
|
if not self.caching: cacheable = False
|
285 |
1903
|
aaronmk
|
used_cache = False
|
286 |
|
|
try:
|
287 |
1927
|
aaronmk
|
# Get cursor
|
288 |
|
|
if cacheable:
|
289 |
|
|
query_lookup = _query_lookup(query, params)
|
290 |
|
|
try:
|
291 |
|
|
cur = self.query_results[query_lookup]
|
292 |
|
|
used_cache = True
|
293 |
|
|
except KeyError: cur = self.DbCursor(self)
|
294 |
|
|
else: cur = self.db.cursor()
|
295 |
|
|
|
296 |
|
|
# Run query
|
297 |
2148
|
aaronmk
|
cur.execute(query, params)
|
298 |
1903
|
aaronmk
|
finally:
|
299 |
2464
|
aaronmk
|
if self.debug and debug_msg_ref != None:# only compute msg if needed
|
300 |
1903
|
aaronmk
|
if used_cache: cache_status = 'Cache hit'
|
301 |
|
|
elif cacheable: cache_status = 'Cache miss'
|
302 |
|
|
else: cache_status = 'Non-cacheable'
|
303 |
2466
|
aaronmk
|
debug_msg_ref[0] = cache_status+':\n'+str(get_cur_query(cur,
|
304 |
2465
|
aaronmk
|
query, params)).rstrip()
|
305 |
1903
|
aaronmk
|
|
306 |
|
|
return cur
|
307 |
1914
|
aaronmk
|
|
308 |
|
|
def is_cached(self, query, params=None):
|
309 |
|
|
return _query_lookup(query, params) in self.query_results
|
310 |
2139
|
aaronmk
|
|
311 |
|
|
def with_savepoint(self, func):
|
312 |
2171
|
aaronmk
|
savepoint = 'level_'+str(self._savepoint)
|
313 |
2443
|
aaronmk
|
self.run_query('SAVEPOINT '+savepoint, log_level=4)
|
314 |
2139
|
aaronmk
|
self._savepoint += 1
|
315 |
|
|
try:
|
316 |
|
|
try: return_val = func()
|
317 |
|
|
finally:
|
318 |
|
|
self._savepoint -= 1
|
319 |
|
|
assert self._savepoint >= 0
|
320 |
|
|
except:
|
321 |
2443
|
aaronmk
|
self.run_query('ROLLBACK TO SAVEPOINT '+savepoint, log_level=4)
|
322 |
2139
|
aaronmk
|
raise
|
323 |
|
|
else:
|
324 |
2443
|
aaronmk
|
self.run_query('RELEASE SAVEPOINT '+savepoint, log_level=4)
|
325 |
2191
|
aaronmk
|
self.do_autocommit()
|
326 |
2139
|
aaronmk
|
return return_val
|
327 |
2191
|
aaronmk
|
|
328 |
|
|
def do_autocommit(self):
|
329 |
|
|
'''Autocommits if outside savepoint'''
|
330 |
|
|
assert self._savepoint >= 0
|
331 |
|
|
if self.autocommit and self._savepoint == 0:
|
332 |
|
|
self.log_debug('Autocommiting')
|
333 |
|
|
self.db.commit()
|
334 |
1849
|
aaronmk
|
|
335 |
1869
|
aaronmk
|
connect = DbConn
|
336 |
|
|
|
337 |
832
|
aaronmk
|
##### Querying
|
338 |
|
|
|
339 |
1894
|
aaronmk
|
def run_raw_query(db, *args, **kw_args):
|
340 |
2085
|
aaronmk
|
'''For params, see DbConn.run_query()'''
|
341 |
1894
|
aaronmk
|
return db.run_query(*args, **kw_args)
|
342 |
11
|
aaronmk
|
|
343 |
2068
|
aaronmk
|
def mogrify(db, query, params):
|
344 |
|
|
module = util.root_module(db.db)
|
345 |
|
|
if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
|
346 |
|
|
else: raise NotImplementedError("Can't mogrify query for "+module+
|
347 |
|
|
' database')
|
348 |
|
|
|
349 |
832
|
aaronmk
|
##### Recoverable querying
|
350 |
15
|
aaronmk
|
|
351 |
2139
|
aaronmk
|
def with_savepoint(db, func): return db.with_savepoint(func)
|
352 |
11
|
aaronmk
|
|
353 |
2464
|
aaronmk
|
def run_query(db, query, params=None, recover=None, cacheable=False,
|
354 |
|
|
log_level=2, log_ignore_excs=None, **kw_args):
|
355 |
2441
|
aaronmk
|
'''For params, see run_raw_query()'''
|
356 |
830
|
aaronmk
|
if recover == None: recover = False
|
357 |
2464
|
aaronmk
|
if log_ignore_excs == None: log_ignore_excs = ()
|
358 |
|
|
log_ignore_excs = tuple(log_ignore_excs)
|
359 |
830
|
aaronmk
|
|
360 |
2464
|
aaronmk
|
debug_msg_ref = [None]
|
361 |
2148
|
aaronmk
|
try:
|
362 |
2464
|
aaronmk
|
try:
|
363 |
|
|
def run(): return run_raw_query(db, query, params, cacheable,
|
364 |
|
|
log_level, debug_msg_ref, **kw_args)
|
365 |
|
|
if recover and not db.is_cached(query, params):
|
366 |
|
|
return with_savepoint(db, run)
|
367 |
|
|
else: return run() # don't need savepoint if cached
|
368 |
|
|
except Exception, e:
|
369 |
|
|
if not recover: raise # need savepoint to run index_cols()
|
370 |
|
|
msg = exc.str_(e)
|
371 |
|
|
|
372 |
|
|
match = re.search(r'duplicate key value violates unique constraint '
|
373 |
|
|
r'"((_?[^\W_]+)_[^"]+?)"', msg)
|
374 |
|
|
if match:
|
375 |
|
|
constraint, table = match.groups()
|
376 |
|
|
try: cols = index_cols(db, table, constraint)
|
377 |
|
|
except NotImplementedError: raise e
|
378 |
|
|
else: raise DuplicateKeyException(constraint, cols, e)
|
379 |
|
|
|
380 |
|
|
match = re.search(r'null value in column "(\w+?)" violates not-null'
|
381 |
|
|
r' constraint', msg)
|
382 |
|
|
if match: raise NullValueException('NOT NULL', [match.group(1)], e)
|
383 |
|
|
|
384 |
|
|
match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
|
385 |
|
|
r'|date/time field value out of range): "(.+?)"\n'
|
386 |
|
|
r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
|
387 |
|
|
if match:
|
388 |
|
|
value, name = match.groups()
|
389 |
|
|
raise FunctionValueException(name, strings.to_unicode(value), e)
|
390 |
|
|
|
391 |
|
|
match = re.search(r'relation "(\w+?)" already exists', msg)
|
392 |
|
|
if match: raise DuplicateTableException(match.group(1), e)
|
393 |
|
|
|
394 |
|
|
match = re.search(r'function "(\w+?)" already exists', msg)
|
395 |
|
|
if match: raise DuplicateFunctionException(match.group(1), e)
|
396 |
|
|
|
397 |
|
|
raise # no specific exception raised
|
398 |
|
|
except log_ignore_excs:
|
399 |
|
|
log_level += 2
|
400 |
|
|
raise
|
401 |
|
|
finally:
|
402 |
|
|
if debug_msg_ref[0] != None: db.log_debug(debug_msg_ref[0], log_level)
|
403 |
830
|
aaronmk
|
|
404 |
832
|
aaronmk
|
##### Basic queries
|
405 |
|
|
|
406 |
2153
|
aaronmk
|
def next_version(name):
|
407 |
|
|
'''Prepends the version # so it won't be removed if the name is truncated'''
|
408 |
2163
|
aaronmk
|
version = 1 # first existing name was version 0
|
409 |
2153
|
aaronmk
|
match = re.match(r'^v(\d+)_(.*)$', name)
|
410 |
|
|
if match:
|
411 |
|
|
version = int(match.group(1))+1
|
412 |
|
|
name = match.group(2)
|
413 |
|
|
return 'v'+str(version)+'_'+name
|
414 |
|
|
|
415 |
2386
|
aaronmk
|
def run_query_into(db, query, params, into=None, *args, **kw_args):
|
416 |
2085
|
aaronmk
|
'''Outputs a query to a temp table.
|
417 |
|
|
For params, see run_query().
|
418 |
|
|
'''
|
419 |
2386
|
aaronmk
|
if into == None: return run_query(db, query, params, *args, **kw_args)
|
420 |
2085
|
aaronmk
|
else: # place rows in temp table
|
421 |
2386
|
aaronmk
|
assert isinstance(into, sql_gen.Table)
|
422 |
2385
|
aaronmk
|
|
423 |
2153
|
aaronmk
|
kw_args['recover'] = True
|
424 |
2464
|
aaronmk
|
kw_args.setdefault('log_ignore_excs', (DuplicateTableException,))
|
425 |
2440
|
aaronmk
|
|
426 |
2468
|
aaronmk
|
temp = not db.autocommit # tables are permanent in autocommit mode
|
427 |
2440
|
aaronmk
|
# "temporary tables cannot specify a schema name", so remove schema
|
428 |
|
|
if temp: into.schema = None
|
429 |
|
|
|
430 |
2153
|
aaronmk
|
while True:
|
431 |
|
|
try:
|
432 |
2194
|
aaronmk
|
create_query = 'CREATE'
|
433 |
2440
|
aaronmk
|
if temp: create_query += ' TEMP'
|
434 |
2467
|
aaronmk
|
create_query += ' TABLE '+into.to_str(db)+' AS\n'+query
|
435 |
2194
|
aaronmk
|
|
436 |
|
|
return run_query(db, create_query, params, *args, **kw_args)
|
437 |
2153
|
aaronmk
|
# CREATE TABLE AS sets rowcount to # rows in query
|
438 |
|
|
except DuplicateTableException, e:
|
439 |
2386
|
aaronmk
|
into.name = next_version(into.name)
|
440 |
2153
|
aaronmk
|
# try again with next version of name
|
441 |
2085
|
aaronmk
|
|
442 |
2120
|
aaronmk
|
order_by_pkey = object() # tells mk_select() to order by the pkey
|
443 |
|
|
|
444 |
2199
|
aaronmk
|
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
|
445 |
|
|
|
446 |
2233
|
aaronmk
|
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
|
447 |
2293
|
aaronmk
|
start=None, order_by=order_by_pkey, default_table=None):
|
448 |
1981
|
aaronmk
|
'''
|
449 |
2121
|
aaronmk
|
@param tables The single table to select from, or a list of tables to join
|
450 |
2280
|
aaronmk
|
together, with tables after the first being sql_gen.Join objects
|
451 |
1981
|
aaronmk
|
@param fields Use None to select all fields in the table
|
452 |
2377
|
aaronmk
|
@param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
|
453 |
2379
|
aaronmk
|
* container can be any iterable type
|
454 |
2399
|
aaronmk
|
* compare_left_side: sql_gen.Code|str (for col name)
|
455 |
|
|
* compare_right_side: sql_gen.ValueCond|literal value
|
456 |
2199
|
aaronmk
|
@param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
|
457 |
|
|
use all columns
|
458 |
2054
|
aaronmk
|
@return tuple(query, params)
|
459 |
1981
|
aaronmk
|
'''
|
460 |
2315
|
aaronmk
|
# Parse tables param
|
461 |
2121
|
aaronmk
|
if not lists.is_seq(tables): tables = [tables]
|
462 |
2141
|
aaronmk
|
tables = list(tables) # don't modify input! (list() copies input)
|
463 |
2315
|
aaronmk
|
table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
|
464 |
2121
|
aaronmk
|
|
465 |
2315
|
aaronmk
|
# Parse other params
|
466 |
2376
|
aaronmk
|
if conds == None: conds = []
|
467 |
|
|
elif isinstance(conds, dict): conds = conds.items()
|
468 |
2379
|
aaronmk
|
conds = list(conds) # don't modify input! (list() copies input)
|
469 |
135
|
aaronmk
|
assert limit == None or type(limit) == int
|
470 |
865
|
aaronmk
|
assert start == None or type(start) == int
|
471 |
2315
|
aaronmk
|
if order_by is order_by_pkey:
|
472 |
|
|
if distinct_on != []: order_by = None
|
473 |
|
|
else: order_by = pkey(db, table0, recover=True)
|
474 |
865
|
aaronmk
|
|
475 |
2315
|
aaronmk
|
query = 'SELECT'
|
476 |
2056
|
aaronmk
|
|
477 |
2315
|
aaronmk
|
def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
|
478 |
2056
|
aaronmk
|
|
479 |
2200
|
aaronmk
|
# DISTINCT ON columns
|
480 |
2233
|
aaronmk
|
if distinct_on != []:
|
481 |
2467
|
aaronmk
|
query += '\nDISTINCT'
|
482 |
2254
|
aaronmk
|
if distinct_on is not distinct_on_all:
|
483 |
2200
|
aaronmk
|
query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
|
484 |
|
|
|
485 |
|
|
# Columns
|
486 |
2467
|
aaronmk
|
query += '\n'
|
487 |
1135
|
aaronmk
|
if fields == None: query += '*'
|
488 |
2056
|
aaronmk
|
else: query += ', '.join(map(parse_col, fields))
|
489 |
2200
|
aaronmk
|
|
490 |
|
|
# Main table
|
491 |
2467
|
aaronmk
|
query += '\nFROM '+table0.to_str(db)
|
492 |
865
|
aaronmk
|
|
493 |
2122
|
aaronmk
|
# Add joins
|
494 |
2271
|
aaronmk
|
left_table = table0
|
495 |
2263
|
aaronmk
|
for join_ in tables:
|
496 |
|
|
table = join_.table
|
497 |
2238
|
aaronmk
|
|
498 |
2343
|
aaronmk
|
# Parse special values
|
499 |
|
|
if join_.type_ is sql_gen.filter_out: # filter no match
|
500 |
2376
|
aaronmk
|
conds.append((sql_gen.Col(table_not_null_col(db, table), table),
|
501 |
|
|
None))
|
502 |
2343
|
aaronmk
|
|
503 |
2467
|
aaronmk
|
query += '\n'+join_.to_str(db, left_table)
|
504 |
2122
|
aaronmk
|
|
505 |
|
|
left_table = table
|
506 |
|
|
|
507 |
865
|
aaronmk
|
missing = True
|
508 |
2376
|
aaronmk
|
if conds != []:
|
509 |
2467
|
aaronmk
|
query += '\nWHERE\n'+('\nAND\n'.join(('('+sql_gen.ColValueCond(l, r)
|
510 |
2410
|
aaronmk
|
.to_str(db)+')' for l, r in conds)))
|
511 |
865
|
aaronmk
|
missing = False
|
512 |
2227
|
aaronmk
|
if order_by != None:
|
513 |
2467
|
aaronmk
|
query += '\nORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
|
514 |
|
|
if limit != None: query += '\nLIMIT '+str(limit); missing = False
|
515 |
865
|
aaronmk
|
if start != None:
|
516 |
2467
|
aaronmk
|
if start != 0: query += '\nOFFSET '+str(start)
|
517 |
865
|
aaronmk
|
missing = False
|
518 |
|
|
if missing: warnings.warn(DbWarning(
|
519 |
|
|
'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
|
520 |
|
|
|
521 |
2315
|
aaronmk
|
return (query, [])
|
522 |
11
|
aaronmk
|
|
523 |
2054
|
aaronmk
|
def select(db, *args, **kw_args):
|
524 |
|
|
'''For params, see mk_select() and run_query()'''
|
525 |
|
|
recover = kw_args.pop('recover', None)
|
526 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
527 |
2442
|
aaronmk
|
log_level = kw_args.pop('log_level', 2)
|
528 |
2054
|
aaronmk
|
|
529 |
|
|
query, params = mk_select(db, *args, **kw_args)
|
530 |
2442
|
aaronmk
|
return run_query(db, query, params, recover, cacheable, log_level=log_level)
|
531 |
2054
|
aaronmk
|
|
532 |
2066
|
aaronmk
|
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
|
533 |
2292
|
aaronmk
|
returning=None, embeddable=False):
|
534 |
1960
|
aaronmk
|
'''
|
535 |
|
|
@param returning str|None An inserted column (such as pkey) to return
|
536 |
2070
|
aaronmk
|
@param embeddable Whether the query should be embeddable as a nested SELECT.
|
537 |
2073
|
aaronmk
|
Warning: If you set this and cacheable=True when the query is run, the
|
538 |
|
|
query will be fully cached, not just if it raises an exception.
|
539 |
1960
|
aaronmk
|
'''
|
540 |
2328
|
aaronmk
|
table = sql_gen.as_Table(table)
|
541 |
2318
|
aaronmk
|
if cols == []: cols = None # no cols (all defaults) = unknown col names
|
542 |
|
|
if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
|
543 |
2063
|
aaronmk
|
if select_query == None: select_query = 'DEFAULT VALUES'
|
544 |
2327
|
aaronmk
|
if returning != None: returning = sql_gen.as_Col(returning, table)
|
545 |
2063
|
aaronmk
|
|
546 |
|
|
# Build query
|
547 |
2328
|
aaronmk
|
query = 'INSERT INTO '+table.to_str(db)
|
548 |
2467
|
aaronmk
|
if cols != None: query += '\n('+', '.join(cols)+')'
|
549 |
|
|
query += '\n'+select_query
|
550 |
2063
|
aaronmk
|
|
551 |
|
|
if returning != None:
|
552 |
2327
|
aaronmk
|
returning_name = copy.copy(returning)
|
553 |
|
|
returning_name.table = None
|
554 |
|
|
returning_name = returning_name.to_str(db)
|
555 |
2467
|
aaronmk
|
query += '\nRETURNING '+returning_name
|
556 |
2063
|
aaronmk
|
|
557 |
2070
|
aaronmk
|
if embeddable:
|
558 |
2327
|
aaronmk
|
assert returning != None
|
559 |
|
|
|
560 |
2070
|
aaronmk
|
# Create function
|
561 |
2330
|
aaronmk
|
function_name = '_'.join(['insert', table.name] + cols)
|
562 |
2327
|
aaronmk
|
return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
|
563 |
2189
|
aaronmk
|
while True:
|
564 |
|
|
try:
|
565 |
2327
|
aaronmk
|
func_schema = None
|
566 |
2468
|
aaronmk
|
if not db.autocommit: func_schema = 'pg_temp'
|
567 |
2327
|
aaronmk
|
function = sql_gen.Table(function_name, func_schema).to_str(db)
|
568 |
2194
|
aaronmk
|
|
569 |
2189
|
aaronmk
|
function_query = '''\
|
570 |
2467
|
aaronmk
|
CREATE FUNCTION '''+function+'''()
|
571 |
|
|
RETURNS '''+return_type+'''
|
572 |
|
|
LANGUAGE sql
|
573 |
|
|
AS $$
|
574 |
|
|
'''+mogrify(db, query, params)+''';
|
575 |
|
|
$$;
|
576 |
2070
|
aaronmk
|
'''
|
577 |
2446
|
aaronmk
|
run_query(db, function_query, recover=True, cacheable=True,
|
578 |
2464
|
aaronmk
|
log_ignore_excs=(DuplicateFunctionException,))
|
579 |
2189
|
aaronmk
|
break # this version was successful
|
580 |
|
|
except DuplicateFunctionException, e:
|
581 |
|
|
function_name = next_version(function_name)
|
582 |
|
|
# try again with next version of name
|
583 |
2070
|
aaronmk
|
|
584 |
2337
|
aaronmk
|
# Return query that uses function
|
585 |
|
|
func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
|
586 |
|
|
[returning_name]) # AS clause requires function alias
|
587 |
|
|
return mk_select(db, func_table, start=0, order_by=None)
|
588 |
2070
|
aaronmk
|
|
589 |
2066
|
aaronmk
|
return (query, params)
|
590 |
|
|
|
591 |
|
|
def insert_select(db, *args, **kw_args):
|
592 |
2085
|
aaronmk
|
'''For params, see mk_insert_select() and run_query_into()
|
593 |
2386
|
aaronmk
|
@param into sql_gen.Table with suggested name of temp table to put RETURNING
|
594 |
|
|
values in
|
595 |
2072
|
aaronmk
|
'''
|
596 |
2386
|
aaronmk
|
into = kw_args.pop('into', None)
|
597 |
|
|
if into != None: kw_args['embeddable'] = True
|
598 |
2066
|
aaronmk
|
recover = kw_args.pop('recover', None)
|
599 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
600 |
|
|
|
601 |
|
|
query, params = mk_insert_select(db, *args, **kw_args)
|
602 |
2386
|
aaronmk
|
return run_query_into(db, query, params, into, recover=recover,
|
603 |
2153
|
aaronmk
|
cacheable=cacheable)
|
604 |
2063
|
aaronmk
|
|
605 |
2066
|
aaronmk
|
default = object() # tells insert() to use the default value for a column
|
606 |
|
|
|
607 |
2063
|
aaronmk
|
def insert(db, table, row, *args, **kw_args):
|
608 |
2085
|
aaronmk
|
'''For params, see insert_select()'''
|
609 |
1960
|
aaronmk
|
if lists.is_seq(row): cols = None
|
610 |
|
|
else:
|
611 |
|
|
cols = row.keys()
|
612 |
|
|
row = row.values()
|
613 |
|
|
row = list(row) # ensure that "!= []" works
|
614 |
|
|
|
615 |
1961
|
aaronmk
|
# Check for special values
|
616 |
|
|
labels = []
|
617 |
|
|
values = []
|
618 |
|
|
for value in row:
|
619 |
2254
|
aaronmk
|
if value is default: labels.append('DEFAULT')
|
620 |
1961
|
aaronmk
|
else:
|
621 |
|
|
labels.append('%s')
|
622 |
|
|
values.append(value)
|
623 |
|
|
|
624 |
|
|
# Build query
|
625 |
2467
|
aaronmk
|
if values != []: query = 'VALUES ('+(', '.join(labels))+')'
|
626 |
2063
|
aaronmk
|
else: query = None
|
627 |
1554
|
aaronmk
|
|
628 |
2064
|
aaronmk
|
return insert_select(db, table, cols, query, values, *args, **kw_args)
|
629 |
11
|
aaronmk
|
|
630 |
2402
|
aaronmk
|
def mk_update(db, table, changes=None, cond=None):
|
631 |
|
|
'''
|
632 |
|
|
@param changes [(col, new_value),...]
|
633 |
|
|
* container can be any iterable type
|
634 |
|
|
* col: sql_gen.Code|str (for col name)
|
635 |
|
|
* new_value: sql_gen.Code|literal value
|
636 |
|
|
@param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
|
637 |
|
|
@return str query
|
638 |
|
|
'''
|
639 |
|
|
query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
|
640 |
2405
|
aaronmk
|
query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
|
641 |
2402
|
aaronmk
|
+sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
|
642 |
2467
|
aaronmk
|
if cond != None: query += '\nWHERE\n'+cond.to_str(db)
|
643 |
2402
|
aaronmk
|
|
644 |
|
|
return query
|
645 |
|
|
|
646 |
|
|
def update(db, *args, **kw_args):
|
647 |
|
|
'''For params, see mk_update() and run_query()'''
|
648 |
|
|
recover = kw_args.pop('recover', None)
|
649 |
|
|
|
650 |
|
|
return run_query(db, mk_update(db, *args, **kw_args), [], recover)
|
651 |
|
|
|
652 |
135
|
aaronmk
|
def last_insert_id(db):
|
653 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
654 |
135
|
aaronmk
|
if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
|
655 |
|
|
elif module == 'MySQLdb': return db.insert_id()
|
656 |
|
|
else: return None
|
657 |
13
|
aaronmk
|
|
658 |
1968
|
aaronmk
|
def truncate(db, table, schema='public'):
|
659 |
|
|
return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
|
660 |
832
|
aaronmk
|
|
661 |
2394
|
aaronmk
|
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
|
662 |
2383
|
aaronmk
|
'''Creates a mapping from original column names (which may have collisions)
|
663 |
2415
|
aaronmk
|
to names that will be distinct among the columns' tables.
|
664 |
2383
|
aaronmk
|
This is meant to be used for several tables that are being joined together.
|
665 |
2415
|
aaronmk
|
@param cols The columns to combine. Duplicates will be removed.
|
666 |
|
|
@param into The table for the new columns.
|
667 |
2394
|
aaronmk
|
@param preserve [sql_gen.Col...] Columns not to rename. Note that these
|
668 |
|
|
columns will be included in the mapping even if they are not in cols.
|
669 |
|
|
The tables of the provided Col objects will be changed to into, so make
|
670 |
|
|
copies of them if you want to keep the original tables.
|
671 |
|
|
@param as_items Whether to return a list of dict items instead of a dict
|
672 |
2383
|
aaronmk
|
@return dict(orig_col=new_col, ...)
|
673 |
|
|
* orig_col: sql_gen.Col(orig_col_name, orig_table)
|
674 |
2392
|
aaronmk
|
* new_col: sql_gen.Col(orig_col_name, into)
|
675 |
|
|
* All mappings use the into table so its name can easily be
|
676 |
2383
|
aaronmk
|
changed for all columns at once
|
677 |
|
|
'''
|
678 |
2415
|
aaronmk
|
cols = lists.uniqify(cols)
|
679 |
|
|
|
680 |
2394
|
aaronmk
|
items = []
|
681 |
2389
|
aaronmk
|
for col in preserve:
|
682 |
2390
|
aaronmk
|
orig_col = copy.copy(col)
|
683 |
2392
|
aaronmk
|
col.table = into
|
684 |
2394
|
aaronmk
|
items.append((orig_col, col))
|
685 |
|
|
preserve = set(preserve)
|
686 |
|
|
for col in cols:
|
687 |
2397
|
aaronmk
|
if col not in preserve:
|
688 |
|
|
items.append((col, sql_gen.Col(clean_name(str(col)), into)))
|
689 |
2394
|
aaronmk
|
|
690 |
|
|
if not as_items: items = dict(items)
|
691 |
|
|
return items
|
692 |
2383
|
aaronmk
|
|
693 |
2393
|
aaronmk
|
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
|
694 |
2391
|
aaronmk
|
'''For params, see mk_flatten_mapping()
|
695 |
|
|
@return See return value of mk_flatten_mapping()
|
696 |
|
|
'''
|
697 |
2394
|
aaronmk
|
items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
|
698 |
|
|
cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
|
699 |
2391
|
aaronmk
|
run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
|
700 |
2392
|
aaronmk
|
into=into)
|
701 |
2394
|
aaronmk
|
return dict(items)
|
702 |
2391
|
aaronmk
|
|
703 |
2414
|
aaronmk
|
##### Database structure queries
|
704 |
|
|
|
705 |
2426
|
aaronmk
|
def table_row_count(db, table, recover=None):
|
706 |
|
|
return value(run_query(db, *mk_select(db, table, [sql_gen.row_count],
|
707 |
2443
|
aaronmk
|
order_by=None, start=0), recover=recover, log_level=3))
|
708 |
2426
|
aaronmk
|
|
709 |
2414
|
aaronmk
|
def table_cols(db, table, recover=None):
|
710 |
|
|
return list(col_names(select(db, table, limit=0, order_by=None,
|
711 |
2443
|
aaronmk
|
recover=recover, log_level=4)))
|
712 |
2414
|
aaronmk
|
|
713 |
2291
|
aaronmk
|
def pkey(db, table, recover=None):
|
714 |
832
|
aaronmk
|
'''Assumed to be first column in table'''
|
715 |
2339
|
aaronmk
|
return table_cols(db, table, recover)[0]
|
716 |
832
|
aaronmk
|
|
717 |
2340
|
aaronmk
|
not_null_col = 'not_null'
|
718 |
|
|
|
719 |
|
|
def table_not_null_col(db, table, recover=None):
|
720 |
|
|
'''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
|
721 |
|
|
if not_null_col in table_cols(db, table, recover): return not_null_col
|
722 |
|
|
else: return pkey(db, table, recover)
|
723 |
|
|
|
724 |
853
|
aaronmk
|
def index_cols(db, table, index):
|
725 |
|
|
'''Can also use this for UNIQUE constraints, because a UNIQUE index is
|
726 |
|
|
automatically created. When you don't know whether something is a UNIQUE
|
727 |
|
|
constraint or a UNIQUE index, use this function.'''
|
728 |
1909
|
aaronmk
|
module = util.root_module(db.db)
|
729 |
|
|
if module == 'psycopg2':
|
730 |
|
|
return list(values(run_query(db, '''\
|
731 |
853
|
aaronmk
|
SELECT attname
|
732 |
866
|
aaronmk
|
FROM
|
733 |
|
|
(
|
734 |
|
|
SELECT attnum, attname
|
735 |
|
|
FROM pg_index
|
736 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
737 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
738 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
|
739 |
|
|
WHERE
|
740 |
|
|
table_.relname = %(table)s
|
741 |
|
|
AND index.relname = %(index)s
|
742 |
|
|
UNION
|
743 |
|
|
SELECT attnum, attname
|
744 |
|
|
FROM
|
745 |
|
|
(
|
746 |
|
|
SELECT
|
747 |
|
|
indrelid
|
748 |
|
|
, (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
|
749 |
|
|
AS indkey
|
750 |
|
|
FROM pg_index
|
751 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
752 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
753 |
|
|
WHERE
|
754 |
|
|
table_.relname = %(table)s
|
755 |
|
|
AND index.relname = %(index)s
|
756 |
|
|
) s
|
757 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
|
758 |
|
|
) s
|
759 |
853
|
aaronmk
|
ORDER BY attnum
|
760 |
|
|
''',
|
761 |
2443
|
aaronmk
|
{'table': table, 'index': index}, cacheable=True, log_level=4)))
|
762 |
1909
|
aaronmk
|
else: raise NotImplementedError("Can't list index columns for "+module+
|
763 |
|
|
' database')
|
764 |
853
|
aaronmk
|
|
765 |
464
|
aaronmk
|
def constraint_cols(db, table, constraint):
|
766 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
767 |
464
|
aaronmk
|
if module == 'psycopg2':
|
768 |
|
|
return list(values(run_query(db, '''\
|
769 |
|
|
SELECT attname
|
770 |
|
|
FROM pg_constraint
|
771 |
|
|
JOIN pg_class ON pg_class.oid = conrelid
|
772 |
|
|
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
|
773 |
|
|
WHERE
|
774 |
|
|
relname = %(table)s
|
775 |
|
|
AND conname = %(constraint)s
|
776 |
|
|
ORDER BY attnum
|
777 |
|
|
''',
|
778 |
|
|
{'table': table, 'constraint': constraint})))
|
779 |
|
|
else: raise NotImplementedError("Can't list constraint columns for "+module+
|
780 |
|
|
' database')
|
781 |
|
|
|
782 |
2096
|
aaronmk
|
row_num_col = '_row_num'
|
783 |
|
|
|
784 |
2408
|
aaronmk
|
def index_col(db, col):
|
785 |
|
|
'''Adds an index on a column if it doesn't already exist.'''
|
786 |
|
|
assert sql_gen.is_table_col(col)
|
787 |
|
|
|
788 |
|
|
table = col.table
|
789 |
|
|
index = sql_gen.as_Table(clean_name(str(col)))
|
790 |
|
|
col = sql_gen.to_name_only_col(col)
|
791 |
|
|
try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
|
792 |
2443
|
aaronmk
|
+' ('+col.to_str(db)+')', recover=True, cacheable=True, log_level=3)
|
793 |
2408
|
aaronmk
|
except DuplicateTableException: pass # index already existed
|
794 |
|
|
|
795 |
2406
|
aaronmk
|
def index_pkey(db, table, recover=None):
|
796 |
|
|
'''Makes the first column in a table the primary key.
|
797 |
|
|
@pre The table must not already have a primary key.
|
798 |
|
|
'''
|
799 |
|
|
table = sql_gen.as_Table(table)
|
800 |
|
|
|
801 |
|
|
index = sql_gen.as_Table(table.name+'_pkey')
|
802 |
|
|
col = sql_gen.to_name_only_col(pkey(db, table, recover))
|
803 |
|
|
run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
|
804 |
2443
|
aaronmk
|
+index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover,
|
805 |
|
|
log_level=3)
|
806 |
2406
|
aaronmk
|
|
807 |
2086
|
aaronmk
|
def add_row_num(db, table):
|
808 |
2117
|
aaronmk
|
'''Adds a row number column to a table. Its name is in row_num_col. It will
|
809 |
|
|
be the primary key.'''
|
810 |
2320
|
aaronmk
|
table = sql_gen.as_Table(table).to_str(db)
|
811 |
2096
|
aaronmk
|
run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
|
812 |
2443
|
aaronmk
|
+' serial NOT NULL PRIMARY KEY', log_level=3)
|
813 |
2086
|
aaronmk
|
|
814 |
1968
|
aaronmk
|
def tables(db, schema='public', table_like='%'):
|
815 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
816 |
1968
|
aaronmk
|
params = {'schema': schema, 'table_like': table_like}
|
817 |
832
|
aaronmk
|
if module == 'psycopg2':
|
818 |
1968
|
aaronmk
|
return values(run_query(db, '''\
|
819 |
|
|
SELECT tablename
|
820 |
|
|
FROM pg_tables
|
821 |
|
|
WHERE
|
822 |
|
|
schemaname = %(schema)s
|
823 |
|
|
AND tablename LIKE %(table_like)s
|
824 |
|
|
ORDER BY tablename
|
825 |
|
|
''',
|
826 |
|
|
params, cacheable=True))
|
827 |
|
|
elif module == 'MySQLdb':
|
828 |
|
|
return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
|
829 |
|
|
cacheable=True))
|
830 |
832
|
aaronmk
|
else: raise NotImplementedError("Can't list tables for "+module+' database')
|
831 |
830
|
aaronmk
|
|
832 |
833
|
aaronmk
|
##### Database management
|
833 |
|
|
|
834 |
1968
|
aaronmk
|
def empty_db(db, schema='public', **kw_args):
|
835 |
|
|
'''For kw_args, see tables()'''
|
836 |
|
|
for table in tables(db, schema, **kw_args): truncate(db, table, schema)
|
837 |
833
|
aaronmk
|
|
838 |
832
|
aaronmk
|
##### Heuristic queries
|
839 |
|
|
|
840 |
2104
|
aaronmk
|
def put(db, table, row, pkey_=None, row_ct_ref=None):
|
841 |
1554
|
aaronmk
|
'''Recovers from errors.
|
842 |
2077
|
aaronmk
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
843 |
|
|
'''
|
844 |
2104
|
aaronmk
|
if pkey_ == None: pkey_ = pkey(db, table, recover=True)
|
845 |
|
|
|
846 |
471
|
aaronmk
|
try:
|
847 |
2149
|
aaronmk
|
cur = insert(db, table, row, pkey_, recover=True)
|
848 |
1554
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
849 |
|
|
row_ct_ref[0] += cur.rowcount
|
850 |
|
|
return value(cur)
|
851 |
471
|
aaronmk
|
except DuplicateKeyException, e:
|
852 |
2104
|
aaronmk
|
return value(select(db, table, [pkey_],
|
853 |
1069
|
aaronmk
|
util.dict_subset_right_join(row, e.cols), recover=True))
|
854 |
471
|
aaronmk
|
|
855 |
473
|
aaronmk
|
def get(db, table, row, pkey, row_ct_ref=None, create=False):
|
856 |
830
|
aaronmk
|
'''Recovers from errors'''
|
857 |
2209
|
aaronmk
|
try: return value(select(db, table, [pkey], row, limit=1, recover=True))
|
858 |
14
|
aaronmk
|
except StopIteration:
|
859 |
40
|
aaronmk
|
if not create: raise
|
860 |
471
|
aaronmk
|
return put(db, table, row, pkey, row_ct_ref) # insert new row
|
861 |
2078
|
aaronmk
|
|
862 |
2416
|
aaronmk
|
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None):
|
863 |
2078
|
aaronmk
|
'''Recovers from errors.
|
864 |
|
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
865 |
2131
|
aaronmk
|
@param in_tables The main input table to select from, followed by a list of
|
866 |
|
|
tables to join with it using the main input table's pkey
|
867 |
2312
|
aaronmk
|
@param mapping dict(out_table_col=in_table_col, ...)
|
868 |
|
|
* out_table_col: sql_gen.Col|str
|
869 |
2323
|
aaronmk
|
* in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
|
870 |
2312
|
aaronmk
|
@return sql_gen.Col Where the output pkeys are made available
|
871 |
2078
|
aaronmk
|
'''
|
872 |
2329
|
aaronmk
|
out_table = sql_gen.as_Table(out_table)
|
873 |
2312
|
aaronmk
|
for in_table_col in mapping.itervalues():
|
874 |
|
|
assert isinstance(in_table_col, sql_gen.Col)
|
875 |
|
|
|
876 |
2450
|
aaronmk
|
def log_debug(msg): db.log_debug(msg, level=1.5)
|
877 |
|
|
|
878 |
2463
|
aaronmk
|
log_debug('Putting columns: '+str(mapping))
|
879 |
|
|
|
880 |
2329
|
aaronmk
|
temp_prefix = out_table.name
|
881 |
2387
|
aaronmk
|
pkeys = sql_gen.Table(temp_prefix+'_pkeys')
|
882 |
2131
|
aaronmk
|
|
883 |
2382
|
aaronmk
|
# Create input joins from list of input tables
|
884 |
|
|
in_tables_ = in_tables[:] # don't modify input!
|
885 |
|
|
in_tables0 = in_tables_.pop(0) # first table is separate
|
886 |
2279
|
aaronmk
|
in_pkey = pkey(db, in_tables0, recover=True)
|
887 |
2285
|
aaronmk
|
in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
|
888 |
2460
|
aaronmk
|
input_joins = [in_tables0]+[sql_gen.Join(v,
|
889 |
|
|
{in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
|
890 |
2131
|
aaronmk
|
|
891 |
2450
|
aaronmk
|
log_debug('Joining together input tables')
|
892 |
2395
|
aaronmk
|
# Place in new table for speed and so don't modify input if values edited
|
893 |
|
|
in_table = sql_gen.Table(temp_prefix+'_in')
|
894 |
|
|
flatten_cols = filter(sql_gen.is_table_col, mapping.values())
|
895 |
|
|
mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
|
896 |
|
|
flatten_cols, preserve=[in_pkey_col], start=0))
|
897 |
|
|
input_joins = [in_table]
|
898 |
|
|
|
899 |
2279
|
aaronmk
|
out_pkey = pkey(db, out_table, recover=True)
|
900 |
2285
|
aaronmk
|
out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
|
901 |
2142
|
aaronmk
|
|
902 |
2387
|
aaronmk
|
pkeys_names = [in_pkey, out_pkey]
|
903 |
2236
|
aaronmk
|
pkeys_cols = [in_pkey_col, out_pkey_col]
|
904 |
|
|
|
905 |
2201
|
aaronmk
|
pkeys_table_exists_ref = [False]
|
906 |
2420
|
aaronmk
|
def insert_into_pkeys(joins, cols):
|
907 |
|
|
query, params = mk_select(db, joins, cols, order_by=None, start=0)
|
908 |
2201
|
aaronmk
|
if pkeys_table_exists_ref[0]:
|
909 |
2387
|
aaronmk
|
insert_select(db, pkeys, pkeys_names, query, params)
|
910 |
2201
|
aaronmk
|
else:
|
911 |
2387
|
aaronmk
|
run_query_into(db, query, params, into=pkeys)
|
912 |
2201
|
aaronmk
|
pkeys_table_exists_ref[0] = True
|
913 |
|
|
|
914 |
2429
|
aaronmk
|
limit_ref = [None]
|
915 |
2380
|
aaronmk
|
conds = set()
|
916 |
2233
|
aaronmk
|
distinct_on = []
|
917 |
2325
|
aaronmk
|
def mk_main_select(joins, cols):
|
918 |
2429
|
aaronmk
|
return mk_select(db, joins, cols, conds, distinct_on,
|
919 |
|
|
limit=limit_ref[0], start=0)
|
920 |
2132
|
aaronmk
|
|
921 |
2309
|
aaronmk
|
def log_exc(e):
|
922 |
2450
|
aaronmk
|
log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
|
923 |
2451
|
aaronmk
|
def remove_all_rows():
|
924 |
2450
|
aaronmk
|
log_debug('Returning NULL for all rows')
|
925 |
2429
|
aaronmk
|
limit_ref[0] = 0 # just create an empty pkeys table
|
926 |
2409
|
aaronmk
|
def ignore(in_col, value):
|
927 |
|
|
in_col_str = str(in_col)
|
928 |
2450
|
aaronmk
|
log_debug('Adding index on '+in_col_str+' to enable fast filtering')
|
929 |
2409
|
aaronmk
|
index_col(db, in_col)
|
930 |
2450
|
aaronmk
|
log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
|
931 |
2403
|
aaronmk
|
def remove_rows(in_col, value):
|
932 |
2409
|
aaronmk
|
ignore(in_col, value)
|
933 |
2378
|
aaronmk
|
cond = (in_col, sql_gen.CompareCond(value, '!='))
|
934 |
|
|
assert cond not in conds # avoid infinite loops
|
935 |
2380
|
aaronmk
|
conds.add(cond)
|
936 |
2403
|
aaronmk
|
def invalid2null(in_col, value):
|
937 |
2409
|
aaronmk
|
ignore(in_col, value)
|
938 |
2403
|
aaronmk
|
update(db, in_table, [(in_col, None)],
|
939 |
|
|
sql_gen.ColValueCond(in_col, value))
|
940 |
2245
|
aaronmk
|
|
941 |
2206
|
aaronmk
|
# Do inserts and selects
|
942 |
2257
|
aaronmk
|
join_cols = {}
|
943 |
2404
|
aaronmk
|
insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
|
944 |
|
|
insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
|
945 |
2206
|
aaronmk
|
while True:
|
946 |
2303
|
aaronmk
|
has_joins = join_cols != {}
|
947 |
|
|
|
948 |
2305
|
aaronmk
|
# Prepare to insert new rows
|
949 |
2325
|
aaronmk
|
insert_joins = input_joins[:] # don't modify original!
|
950 |
2403
|
aaronmk
|
insert_args = dict(recover=True, cacheable=False)
|
951 |
2303
|
aaronmk
|
if has_joins:
|
952 |
2317
|
aaronmk
|
distinct_on = [v.to_Col() for v in join_cols.values()]
|
953 |
2325
|
aaronmk
|
insert_joins.append(sql_gen.Join(out_table, join_cols,
|
954 |
|
|
sql_gen.filter_out))
|
955 |
|
|
else:
|
956 |
2404
|
aaronmk
|
insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
|
957 |
2303
|
aaronmk
|
|
958 |
2450
|
aaronmk
|
log_debug('Inserting new rows')
|
959 |
2206
|
aaronmk
|
try:
|
960 |
|
|
cur = insert_select(db, out_table, mapping.keys(),
|
961 |
2325
|
aaronmk
|
*mk_main_select(insert_joins, mapping.values()), **insert_args)
|
962 |
2357
|
aaronmk
|
break # insert successful
|
963 |
2206
|
aaronmk
|
except DuplicateKeyException, e:
|
964 |
2309
|
aaronmk
|
log_exc(e)
|
965 |
|
|
|
966 |
2258
|
aaronmk
|
old_join_cols = join_cols.copy()
|
967 |
2334
|
aaronmk
|
join_cols.update(util.dict_subset(mapping, e.cols))
|
968 |
2450
|
aaronmk
|
log_debug('Ignoring existing rows, comparing on '+str(join_cols))
|
969 |
2258
|
aaronmk
|
assert join_cols != old_join_cols # avoid infinite loops
|
970 |
2230
|
aaronmk
|
except NullValueException, e:
|
971 |
2309
|
aaronmk
|
log_exc(e)
|
972 |
|
|
|
973 |
2230
|
aaronmk
|
out_col, = e.cols
|
974 |
|
|
try: in_col = mapping[out_col]
|
975 |
2356
|
aaronmk
|
except KeyError:
|
976 |
2451
|
aaronmk
|
log_debug('Missing mapping for NOT NULL '+out_col)
|
977 |
|
|
remove_all_rows()
|
978 |
2403
|
aaronmk
|
else: remove_rows(in_col, None)
|
979 |
2243
|
aaronmk
|
except FunctionValueException, e:
|
980 |
2309
|
aaronmk
|
log_exc(e)
|
981 |
|
|
|
982 |
2344
|
aaronmk
|
assert e.name == out_table.name
|
983 |
2243
|
aaronmk
|
out_col = 'value' # assume function param was named "value"
|
984 |
2403
|
aaronmk
|
invalid2null(mapping[out_col], e.value)
|
985 |
2429
|
aaronmk
|
except DatabaseErrors, e:
|
986 |
|
|
log_exc(e)
|
987 |
|
|
|
988 |
2451
|
aaronmk
|
msg = 'No handler for exception: '+exc.str_(e, first_line_only=True)
|
989 |
|
|
warnings.warn(DbWarning(msg))
|
990 |
|
|
log_debug(msg)
|
991 |
|
|
remove_all_rows()
|
992 |
2358
|
aaronmk
|
# after exception handled, rerun loop with additional constraints
|
993 |
2132
|
aaronmk
|
|
994 |
2357
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
995 |
|
|
row_ct_ref[0] += cur.rowcount
|
996 |
|
|
|
997 |
|
|
if has_joins:
|
998 |
|
|
select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
|
999 |
2450
|
aaronmk
|
log_debug('Getting output pkeys of existing/inserted rows')
|
1000 |
2420
|
aaronmk
|
insert_into_pkeys(select_joins, pkeys_cols)
|
1001 |
2357
|
aaronmk
|
else:
|
1002 |
2404
|
aaronmk
|
add_row_num(db, insert_out_pkeys) # for joining with input pkeys
|
1003 |
2357
|
aaronmk
|
|
1004 |
2450
|
aaronmk
|
log_debug('Getting input pkeys for rows in insert')
|
1005 |
2357
|
aaronmk
|
run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
|
1006 |
2404
|
aaronmk
|
into=insert_in_pkeys)
|
1007 |
|
|
add_row_num(db, insert_in_pkeys) # for joining with output pkeys
|
1008 |
2357
|
aaronmk
|
|
1009 |
2428
|
aaronmk
|
assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
|
1010 |
|
|
insert_in_pkeys)
|
1011 |
|
|
|
1012 |
2450
|
aaronmk
|
log_debug('Joining together output and input pkeys')
|
1013 |
2404
|
aaronmk
|
pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
|
1014 |
2357
|
aaronmk
|
{row_num_col: sql_gen.join_same_not_null})]
|
1015 |
2420
|
aaronmk
|
insert_into_pkeys(pkey_joins, pkeys_names)
|
1016 |
2357
|
aaronmk
|
|
1017 |
2450
|
aaronmk
|
log_debug('Adding pkey on returned pkeys table to enable fast joins')
|
1018 |
2407
|
aaronmk
|
index_pkey(db, pkeys)
|
1019 |
|
|
|
1020 |
2450
|
aaronmk
|
log_debug("Setting missing rows' pkeys to NULL")
|
1021 |
2387
|
aaronmk
|
missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
|
1022 |
2357
|
aaronmk
|
{in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
|
1023 |
|
|
# must use join_same_not_null or query will take forever
|
1024 |
2420
|
aaronmk
|
insert_into_pkeys(missing_rows_joins,
|
1025 |
|
|
[in_pkey_col, sql_gen.NamedCol(out_pkey, None)])
|
1026 |
2357
|
aaronmk
|
|
1027 |
2428
|
aaronmk
|
assert table_row_count(db, pkeys) == table_row_count(db, in_table)
|
1028 |
|
|
|
1029 |
2387
|
aaronmk
|
return sql_gen.Col(out_pkey, pkeys)
|
1030 |
2115
|
aaronmk
|
|
1031 |
|
|
##### Data cleanup
|
1032 |
|
|
|
1033 |
2290
|
aaronmk
|
def cleanup_table(db, table, cols):
|
1034 |
2115
|
aaronmk
|
def esc_name_(name): return esc_name(db, name)
|
1035 |
|
|
|
1036 |
2290
|
aaronmk
|
table = sql_gen.as_Table(table).to_str(db)
|
1037 |
2115
|
aaronmk
|
cols = map(esc_name_, cols)
|
1038 |
|
|
|
1039 |
|
|
run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
|
1040 |
|
|
+' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
|
1041 |
|
|
for col in cols))),
|
1042 |
|
|
dict(null0='', null1=r'\N'))
|