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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
19
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
36
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
52 2307 aaronmk
            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
57
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
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##### Warnings
71
72
class DbWarning(UserWarning): pass
73
74 1930 aaronmk
##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
91
def next_value(cur): return next_row(cur)[0]
92
93
def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
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def check_name(name):
106
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
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def esc_name_by_module(module, name, ignore_case=False):
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    if module == 'psycopg2' or module == None:
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        if ignore_case:
112
            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
115
        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
119
120
def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
122
123
def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
125
126
def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
137
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
140
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DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
143
144
def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
146
    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
148
149
def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg, level=2: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
158
        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
160
        self.serializable = serializable
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        self.autocommit = autocommit
162
        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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166
        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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170
    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
172
        if name == 'db': return self._db()
173
        else: raise AttributeError()
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    def __getstate__(self):
176
        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
179
        return state
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    def connected(self): return self.__db != None
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    def _db(self):
184
        if self.__db == None:
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            # Process db_config
186
            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
189
            module = __import__(module_name)
190
            _add_module(module)
191
            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
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195
            # Connect
196
            self.__db = module.connect(**db_config)
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198
            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
200
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
202
                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
204
                run_raw_query(self, "SELECT set_config('search_path', \
205
%s || current_setting('search_path'), false)", [schemas_])
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207
        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
228
                self._cache_result()
229
                raise
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            # Fetch all rows so result will be cached
231
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
235
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
261
                try: return self.iter.next()
262
                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
268
            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False, log_level=2,
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        debug_msg_ref=None):
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        '''
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        @param log_ignore_excs The log_level will be increased by 2 if the query
280
            throws one of these exceptions.
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        '''
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        assert query != None
283
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        if not self.caching: cacheable = False
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        used_cache = False
286
        try:
287 1927 aaronmk
            # Get cursor
288
            if cacheable:
289
                query_lookup = _query_lookup(query, params)
290
                try:
291
                    cur = self.query_results[query_lookup]
292
                    used_cache = True
293
                except KeyError: cur = self.DbCursor(self)
294
            else: cur = self.db.cursor()
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296
            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug and debug_msg_ref != None:# only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
301
                elif cacheable: cache_status = 'Cache miss'
302
                else: cache_status = 'Non-cacheable'
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                debug_msg_ref[0] = cache_status+':\n'+str(get_cur_query(cur,
304 2465 aaronmk
                    query, params)).rstrip()
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306
        return cur
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308
    def is_cached(self, query, params=None):
309
        return _query_lookup(query, params) in self.query_results
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311
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint, log_level=4)
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        self._savepoint += 1
315
        try:
316
            try: return_val = func()
317
            finally:
318
                self._savepoint -= 1
319
                assert self._savepoint >= 0
320
        except:
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            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint, log_level=4)
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            raise
323
        else:
324 2443 aaronmk
            self.run_query('RELEASE SAVEPOINT '+savepoint, log_level=4)
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            self.do_autocommit()
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            return return_val
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328
    def do_autocommit(self):
329
        '''Autocommits if outside savepoint'''
330
        assert self._savepoint >= 0
331
        if self.autocommit and self._savepoint == 0:
332
            self.log_debug('Autocommiting')
333
            self.db.commit()
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connect = DbConn
336
337 832 aaronmk
##### Querying
338
339 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
344
    module = util.root_module(db.db)
345
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
346
    else: raise NotImplementedError("Can't mogrify query for "+module+
347
        ' database')
348
349 832 aaronmk
##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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def run_query(db, query, params=None, recover=None, cacheable=False,
354
    log_level=2, log_ignore_excs=None, **kw_args):
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    '''For params, see run_raw_query()'''
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    if recover == None: recover = False
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    if log_ignore_excs == None: log_ignore_excs = ()
358
    log_ignore_excs = tuple(log_ignore_excs)
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    debug_msg_ref = [None]
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    try:
362 2464 aaronmk
        try:
363
            def run(): return run_raw_query(db, query, params, cacheable,
364
                log_level, debug_msg_ref, **kw_args)
365
            if recover and not db.is_cached(query, params):
366
                return with_savepoint(db, run)
367
            else: return run() # don't need savepoint if cached
368
        except Exception, e:
369
            if not recover: raise # need savepoint to run index_cols()
370
            msg = exc.str_(e)
371
372
            match = re.search(r'duplicate key value violates unique constraint '
373
                r'"((_?[^\W_]+)_[^"]+?)"', msg)
374
            if match:
375
                constraint, table = match.groups()
376
                try: cols = index_cols(db, table, constraint)
377
                except NotImplementedError: raise e
378
                else: raise DuplicateKeyException(constraint, cols, e)
379
380
            match = re.search(r'null value in column "(\w+?)" violates not-null'
381
                r' constraint', msg)
382
            if match: raise NullValueException('NOT NULL', [match.group(1)], e)
383
384
            match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
385
                r'|date/time field value out of range): "(.+?)"\n'
386
                r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
387
            if match:
388
                value, name = match.groups()
389
                raise FunctionValueException(name, strings.to_unicode(value), e)
390
391
            match = re.search(r'relation "(\w+?)" already exists', msg)
392
            if match: raise DuplicateTableException(match.group(1), e)
393
394
            match = re.search(r'function "(\w+?)" already exists', msg)
395
            if match: raise DuplicateFunctionException(match.group(1), e)
396
397
            raise # no specific exception raised
398
    except log_ignore_excs:
399
        log_level += 2
400
        raise
401
    finally:
402
        if debug_msg_ref[0] != None: db.log_debug(debug_msg_ref[0], log_level)
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##### Basic queries
405
406 2153 aaronmk
def next_version(name):
407
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
409 2153 aaronmk
    match = re.match(r'^v(\d+)_(.*)$', name)
410
    if match:
411
        version = int(match.group(1))+1
412
        name = match.group(2)
413
    return 'v'+str(version)+'_'+name
414
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def run_query_into(db, query, params, into=None, *args, **kw_args):
416 2085 aaronmk
    '''Outputs a query to a temp table.
417
    For params, see run_query().
418
    '''
419 2386 aaronmk
    if into == None: return run_query(db, query, params, *args, **kw_args)
420 2085 aaronmk
    else: # place rows in temp table
421 2386 aaronmk
        assert isinstance(into, sql_gen.Table)
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423 2153 aaronmk
        kw_args['recover'] = True
424 2464 aaronmk
        kw_args.setdefault('log_ignore_excs', (DuplicateTableException,))
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426 2468 aaronmk
        temp = not db.autocommit # tables are permanent in autocommit mode
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        # "temporary tables cannot specify a schema name", so remove schema
428
        if temp: into.schema = None
429
430 2153 aaronmk
        while True:
431
            try:
432 2194 aaronmk
                create_query = 'CREATE'
433 2440 aaronmk
                if temp: create_query += ' TEMP'
434 2467 aaronmk
                create_query += ' TABLE '+into.to_str(db)+' AS\n'+query
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436
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
438
            except DuplicateTableException, e:
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                into.name = next_version(into.name)
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                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
443
444 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
445
446 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
447 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
448 1981 aaronmk
    '''
449 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
450 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
451 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
453 2379 aaronmk
        * container can be any iterable type
454 2399 aaronmk
        * compare_left_side: sql_gen.Code|str (for col name)
455
        * compare_right_side: sql_gen.ValueCond|literal value
456 2199 aaronmk
    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
457
        use all columns
458 2054 aaronmk
    @return tuple(query, params)
459 1981 aaronmk
    '''
460 2315 aaronmk
    # Parse tables param
461 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
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    tables = list(tables) # don't modify input! (list() copies input)
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    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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465 2315 aaronmk
    # Parse other params
466 2376 aaronmk
    if conds == None: conds = []
467
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
469 135 aaronmk
    assert limit == None or type(limit) == int
470 865 aaronmk
    assert start == None or type(start) == int
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    if order_by is order_by_pkey:
472
        if distinct_on != []: order_by = None
473
        else: order_by = pkey(db, table0, recover=True)
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475 2315 aaronmk
    query = 'SELECT'
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477 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
478 2056 aaronmk
479 2200 aaronmk
    # DISTINCT ON columns
480 2233 aaronmk
    if distinct_on != []:
481 2467 aaronmk
        query += '\nDISTINCT'
482 2254 aaronmk
        if distinct_on is not distinct_on_all:
483 2200 aaronmk
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
484
485
    # Columns
486 2467 aaronmk
    query += '\n'
487 1135 aaronmk
    if fields == None: query += '*'
488 2056 aaronmk
    else: query += ', '.join(map(parse_col, fields))
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490
    # Main table
491 2467 aaronmk
    query += '\nFROM '+table0.to_str(db)
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493 2122 aaronmk
    # Add joins
494 2271 aaronmk
    left_table = table0
495 2263 aaronmk
    for join_ in tables:
496
        table = join_.table
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498 2343 aaronmk
        # Parse special values
499
        if join_.type_ is sql_gen.filter_out: # filter no match
500 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
501
                None))
502 2343 aaronmk
503 2467 aaronmk
        query += '\n'+join_.to_str(db, left_table)
504 2122 aaronmk
505
        left_table = table
506
507 865 aaronmk
    missing = True
508 2376 aaronmk
    if conds != []:
509 2467 aaronmk
        query += '\nWHERE\n'+('\nAND\n'.join(('('+sql_gen.ColValueCond(l, r)
510 2410 aaronmk
            .to_str(db)+')' for l, r in conds)))
511 865 aaronmk
        missing = False
512 2227 aaronmk
    if order_by != None:
513 2467 aaronmk
        query += '\nORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
514
    if limit != None: query += '\nLIMIT '+str(limit); missing = False
515 865 aaronmk
    if start != None:
516 2467 aaronmk
        if start != 0: query += '\nOFFSET '+str(start)
517 865 aaronmk
        missing = False
518
    if missing: warnings.warn(DbWarning(
519
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
520
521 2315 aaronmk
    return (query, [])
522 11 aaronmk
523 2054 aaronmk
def select(db, *args, **kw_args):
524
    '''For params, see mk_select() and run_query()'''
525
    recover = kw_args.pop('recover', None)
526
    cacheable = kw_args.pop('cacheable', True)
527 2442 aaronmk
    log_level = kw_args.pop('log_level', 2)
528 2054 aaronmk
529
    query, params = mk_select(db, *args, **kw_args)
530 2442 aaronmk
    return run_query(db, query, params, recover, cacheable, log_level=log_level)
531 2054 aaronmk
532 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
533 2292 aaronmk
    returning=None, embeddable=False):
534 1960 aaronmk
    '''
535
    @param returning str|None An inserted column (such as pkey) to return
536 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
537 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
538
        query will be fully cached, not just if it raises an exception.
539 1960 aaronmk
    '''
540 2328 aaronmk
    table = sql_gen.as_Table(table)
541 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
542
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
543 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
544 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
545 2063 aaronmk
546
    # Build query
547 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
548 2467 aaronmk
    if cols != None: query += '\n('+', '.join(cols)+')'
549
    query += '\n'+select_query
550 2063 aaronmk
551
    if returning != None:
552 2327 aaronmk
        returning_name = copy.copy(returning)
553
        returning_name.table = None
554
        returning_name = returning_name.to_str(db)
555 2467 aaronmk
        query += '\nRETURNING '+returning_name
556 2063 aaronmk
557 2070 aaronmk
    if embeddable:
558 2327 aaronmk
        assert returning != None
559
560 2070 aaronmk
        # Create function
561 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
562 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
563 2189 aaronmk
        while True:
564
            try:
565 2327 aaronmk
                func_schema = None
566 2468 aaronmk
                if not db.autocommit: func_schema = 'pg_temp'
567 2327 aaronmk
                function = sql_gen.Table(function_name, func_schema).to_str(db)
568 2194 aaronmk
569 2189 aaronmk
                function_query = '''\
570 2467 aaronmk
CREATE FUNCTION '''+function+'''()
571
RETURNS '''+return_type+'''
572
LANGUAGE sql
573
AS $$
574
'''+mogrify(db, query, params)+''';
575
$$;
576 2070 aaronmk
'''
577 2446 aaronmk
                run_query(db, function_query, recover=True, cacheable=True,
578 2464 aaronmk
                    log_ignore_excs=(DuplicateFunctionException,))
579 2189 aaronmk
                break # this version was successful
580
            except DuplicateFunctionException, e:
581
                function_name = next_version(function_name)
582
                # try again with next version of name
583 2070 aaronmk
584 2337 aaronmk
        # Return query that uses function
585
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
586
            [returning_name]) # AS clause requires function alias
587
        return mk_select(db, func_table, start=0, order_by=None)
588 2070 aaronmk
589 2066 aaronmk
    return (query, params)
590
591
def insert_select(db, *args, **kw_args):
592 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
593 2386 aaronmk
    @param into sql_gen.Table with suggested name of temp table to put RETURNING
594
        values in
595 2072 aaronmk
    '''
596 2386 aaronmk
    into = kw_args.pop('into', None)
597
    if into != None: kw_args['embeddable'] = True
598 2066 aaronmk
    recover = kw_args.pop('recover', None)
599
    cacheable = kw_args.pop('cacheable', True)
600
601
    query, params = mk_insert_select(db, *args, **kw_args)
602 2386 aaronmk
    return run_query_into(db, query, params, into, recover=recover,
603 2153 aaronmk
        cacheable=cacheable)
604 2063 aaronmk
605 2066 aaronmk
default = object() # tells insert() to use the default value for a column
606
607 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
608 2085 aaronmk
    '''For params, see insert_select()'''
609 1960 aaronmk
    if lists.is_seq(row): cols = None
610
    else:
611
        cols = row.keys()
612
        row = row.values()
613
    row = list(row) # ensure that "!= []" works
614
615 1961 aaronmk
    # Check for special values
616
    labels = []
617
    values = []
618
    for value in row:
619 2254 aaronmk
        if value is default: labels.append('DEFAULT')
620 1961 aaronmk
        else:
621
            labels.append('%s')
622
            values.append(value)
623
624
    # Build query
625 2467 aaronmk
    if values != []: query = 'VALUES ('+(', '.join(labels))+')'
626 2063 aaronmk
    else: query = None
627 1554 aaronmk
628 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
629 11 aaronmk
630 2402 aaronmk
def mk_update(db, table, changes=None, cond=None):
631
    '''
632
    @param changes [(col, new_value),...]
633
        * container can be any iterable type
634
        * col: sql_gen.Code|str (for col name)
635
        * new_value: sql_gen.Code|literal value
636
    @param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
637
    @return str query
638
    '''
639
    query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
640 2405 aaronmk
    query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
641 2402 aaronmk
        +sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
642 2467 aaronmk
    if cond != None: query += '\nWHERE\n'+cond.to_str(db)
643 2402 aaronmk
644
    return query
645
646
def update(db, *args, **kw_args):
647
    '''For params, see mk_update() and run_query()'''
648
    recover = kw_args.pop('recover', None)
649
650
    return run_query(db, mk_update(db, *args, **kw_args), [], recover)
651
652 135 aaronmk
def last_insert_id(db):
653 1849 aaronmk
    module = util.root_module(db.db)
654 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
655
    elif module == 'MySQLdb': return db.insert_id()
656
    else: return None
657 13 aaronmk
658 1968 aaronmk
def truncate(db, table, schema='public'):
659
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
660 832 aaronmk
661 2394 aaronmk
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
662 2383 aaronmk
    '''Creates a mapping from original column names (which may have collisions)
663 2415 aaronmk
    to names that will be distinct among the columns' tables.
664 2383 aaronmk
    This is meant to be used for several tables that are being joined together.
665 2415 aaronmk
    @param cols The columns to combine. Duplicates will be removed.
666
    @param into The table for the new columns.
667 2394 aaronmk
    @param preserve [sql_gen.Col...] Columns not to rename. Note that these
668
        columns will be included in the mapping even if they are not in cols.
669
        The tables of the provided Col objects will be changed to into, so make
670
        copies of them if you want to keep the original tables.
671
    @param as_items Whether to return a list of dict items instead of a dict
672 2383 aaronmk
    @return dict(orig_col=new_col, ...)
673
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
674 2392 aaronmk
        * new_col: sql_gen.Col(orig_col_name, into)
675
        * All mappings use the into table so its name can easily be
676 2383 aaronmk
          changed for all columns at once
677
    '''
678 2415 aaronmk
    cols = lists.uniqify(cols)
679
680 2394 aaronmk
    items = []
681 2389 aaronmk
    for col in preserve:
682 2390 aaronmk
        orig_col = copy.copy(col)
683 2392 aaronmk
        col.table = into
684 2394 aaronmk
        items.append((orig_col, col))
685
    preserve = set(preserve)
686
    for col in cols:
687 2397 aaronmk
        if col not in preserve:
688
            items.append((col, sql_gen.Col(clean_name(str(col)), into)))
689 2394 aaronmk
690
    if not as_items: items = dict(items)
691
    return items
692 2383 aaronmk
693 2393 aaronmk
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
694 2391 aaronmk
    '''For params, see mk_flatten_mapping()
695
    @return See return value of mk_flatten_mapping()
696
    '''
697 2394 aaronmk
    items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
698
    cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
699 2391 aaronmk
    run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
700 2392 aaronmk
        into=into)
701 2394 aaronmk
    return dict(items)
702 2391 aaronmk
703 2414 aaronmk
##### Database structure queries
704
705 2426 aaronmk
def table_row_count(db, table, recover=None):
706
    return value(run_query(db, *mk_select(db, table, [sql_gen.row_count],
707 2443 aaronmk
        order_by=None, start=0), recover=recover, log_level=3))
708 2426 aaronmk
709 2414 aaronmk
def table_cols(db, table, recover=None):
710
    return list(col_names(select(db, table, limit=0, order_by=None,
711 2443 aaronmk
        recover=recover, log_level=4)))
712 2414 aaronmk
713 2291 aaronmk
def pkey(db, table, recover=None):
714 832 aaronmk
    '''Assumed to be first column in table'''
715 2339 aaronmk
    return table_cols(db, table, recover)[0]
716 832 aaronmk
717 2340 aaronmk
not_null_col = 'not_null'
718
719
def table_not_null_col(db, table, recover=None):
720
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
721
    if not_null_col in table_cols(db, table, recover): return not_null_col
722
    else: return pkey(db, table, recover)
723
724 853 aaronmk
def index_cols(db, table, index):
725
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
726
    automatically created. When you don't know whether something is a UNIQUE
727
    constraint or a UNIQUE index, use this function.'''
728 1909 aaronmk
    module = util.root_module(db.db)
729
    if module == 'psycopg2':
730
        return list(values(run_query(db, '''\
731 853 aaronmk
SELECT attname
732 866 aaronmk
FROM
733
(
734
        SELECT attnum, attname
735
        FROM pg_index
736
        JOIN pg_class index ON index.oid = indexrelid
737
        JOIN pg_class table_ ON table_.oid = indrelid
738
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
739
        WHERE
740
            table_.relname = %(table)s
741
            AND index.relname = %(index)s
742
    UNION
743
        SELECT attnum, attname
744
        FROM
745
        (
746
            SELECT
747
                indrelid
748
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
749
                    AS indkey
750
            FROM pg_index
751
            JOIN pg_class index ON index.oid = indexrelid
752
            JOIN pg_class table_ ON table_.oid = indrelid
753
            WHERE
754
                table_.relname = %(table)s
755
                AND index.relname = %(index)s
756
        ) s
757
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
758
) s
759 853 aaronmk
ORDER BY attnum
760
''',
761 2443 aaronmk
            {'table': table, 'index': index}, cacheable=True, log_level=4)))
762 1909 aaronmk
    else: raise NotImplementedError("Can't list index columns for "+module+
763
        ' database')
764 853 aaronmk
765 464 aaronmk
def constraint_cols(db, table, constraint):
766 1849 aaronmk
    module = util.root_module(db.db)
767 464 aaronmk
    if module == 'psycopg2':
768
        return list(values(run_query(db, '''\
769
SELECT attname
770
FROM pg_constraint
771
JOIN pg_class ON pg_class.oid = conrelid
772
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
773
WHERE
774
    relname = %(table)s
775
    AND conname = %(constraint)s
776
ORDER BY attnum
777
''',
778
            {'table': table, 'constraint': constraint})))
779
    else: raise NotImplementedError("Can't list constraint columns for "+module+
780
        ' database')
781
782 2096 aaronmk
row_num_col = '_row_num'
783
784 2408 aaronmk
def index_col(db, col):
785
    '''Adds an index on a column if it doesn't already exist.'''
786
    assert sql_gen.is_table_col(col)
787
788
    table = col.table
789
    index = sql_gen.as_Table(clean_name(str(col)))
790
    col = sql_gen.to_name_only_col(col)
791
    try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
792 2443 aaronmk
        +' ('+col.to_str(db)+')', recover=True, cacheable=True, log_level=3)
793 2408 aaronmk
    except DuplicateTableException: pass # index already existed
794
795 2406 aaronmk
def index_pkey(db, table, recover=None):
796
    '''Makes the first column in a table the primary key.
797
    @pre The table must not already have a primary key.
798
    '''
799
    table = sql_gen.as_Table(table)
800
801
    index = sql_gen.as_Table(table.name+'_pkey')
802
    col = sql_gen.to_name_only_col(pkey(db, table, recover))
803
    run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
804 2443 aaronmk
        +index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover,
805
        log_level=3)
806 2406 aaronmk
807 2086 aaronmk
def add_row_num(db, table):
808 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
809
    be the primary key.'''
810 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
811 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
812 2443 aaronmk
        +' serial NOT NULL PRIMARY KEY', log_level=3)
813 2086 aaronmk
814 1968 aaronmk
def tables(db, schema='public', table_like='%'):
815 1849 aaronmk
    module = util.root_module(db.db)
816 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
817 832 aaronmk
    if module == 'psycopg2':
818 1968 aaronmk
        return values(run_query(db, '''\
819
SELECT tablename
820
FROM pg_tables
821
WHERE
822
    schemaname = %(schema)s
823
    AND tablename LIKE %(table_like)s
824
ORDER BY tablename
825
''',
826
            params, cacheable=True))
827
    elif module == 'MySQLdb':
828
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
829
            cacheable=True))
830 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
831 830 aaronmk
832 833 aaronmk
##### Database management
833
834 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
835
    '''For kw_args, see tables()'''
836
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
837 833 aaronmk
838 832 aaronmk
##### Heuristic queries
839
840 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
841 1554 aaronmk
    '''Recovers from errors.
842 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
843
    '''
844 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
845
846 471 aaronmk
    try:
847 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
848 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
849
            row_ct_ref[0] += cur.rowcount
850
        return value(cur)
851 471 aaronmk
    except DuplicateKeyException, e:
852 2104 aaronmk
        return value(select(db, table, [pkey_],
853 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
854 471 aaronmk
855 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
856 830 aaronmk
    '''Recovers from errors'''
857 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
858 14 aaronmk
    except StopIteration:
859 40 aaronmk
        if not create: raise
860 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
861 2078 aaronmk
862 2416 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None):
863 2078 aaronmk
    '''Recovers from errors.
864
    Only works under PostgreSQL (uses INSERT RETURNING).
865 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
866
        tables to join with it using the main input table's pkey
867 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
868
        * out_table_col: sql_gen.Col|str
869 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
870 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
871 2078 aaronmk
    '''
872 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
873 2312 aaronmk
    for in_table_col in mapping.itervalues():
874
        assert isinstance(in_table_col, sql_gen.Col)
875
876 2450 aaronmk
    def log_debug(msg): db.log_debug(msg, level=1.5)
877
878 2463 aaronmk
    log_debug('Putting columns: '+str(mapping))
879
880 2329 aaronmk
    temp_prefix = out_table.name
881 2387 aaronmk
    pkeys = sql_gen.Table(temp_prefix+'_pkeys')
882 2131 aaronmk
883 2382 aaronmk
    # Create input joins from list of input tables
884
    in_tables_ = in_tables[:] # don't modify input!
885
    in_tables0 = in_tables_.pop(0) # first table is separate
886 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
887 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
888 2460 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
889
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
890 2131 aaronmk
891 2450 aaronmk
    log_debug('Joining together input tables')
892 2395 aaronmk
    # Place in new table for speed and so don't modify input if values edited
893
    in_table = sql_gen.Table(temp_prefix+'_in')
894
    flatten_cols = filter(sql_gen.is_table_col, mapping.values())
895
    mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
896
        flatten_cols, preserve=[in_pkey_col], start=0))
897
    input_joins = [in_table]
898
899 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
900 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
901 2142 aaronmk
902 2387 aaronmk
    pkeys_names = [in_pkey, out_pkey]
903 2236 aaronmk
    pkeys_cols = [in_pkey_col, out_pkey_col]
904
905 2201 aaronmk
    pkeys_table_exists_ref = [False]
906 2420 aaronmk
    def insert_into_pkeys(joins, cols):
907
        query, params = mk_select(db, joins, cols, order_by=None, start=0)
908 2201 aaronmk
        if pkeys_table_exists_ref[0]:
909 2387 aaronmk
            insert_select(db, pkeys, pkeys_names, query, params)
910 2201 aaronmk
        else:
911 2387 aaronmk
            run_query_into(db, query, params, into=pkeys)
912 2201 aaronmk
            pkeys_table_exists_ref[0] = True
913
914 2429 aaronmk
    limit_ref = [None]
915 2380 aaronmk
    conds = set()
916 2233 aaronmk
    distinct_on = []
917 2325 aaronmk
    def mk_main_select(joins, cols):
918 2429 aaronmk
        return mk_select(db, joins, cols, conds, distinct_on,
919
            limit=limit_ref[0], start=0)
920 2132 aaronmk
921 2309 aaronmk
    def log_exc(e):
922 2450 aaronmk
        log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
923 2451 aaronmk
    def remove_all_rows():
924 2450 aaronmk
        log_debug('Returning NULL for all rows')
925 2429 aaronmk
        limit_ref[0] = 0 # just create an empty pkeys table
926 2409 aaronmk
    def ignore(in_col, value):
927
        in_col_str = str(in_col)
928 2450 aaronmk
        log_debug('Adding index on '+in_col_str+' to enable fast filtering')
929 2409 aaronmk
        index_col(db, in_col)
930 2450 aaronmk
        log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
931 2403 aaronmk
    def remove_rows(in_col, value):
932 2409 aaronmk
        ignore(in_col, value)
933 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
934
        assert cond not in conds # avoid infinite loops
935 2380 aaronmk
        conds.add(cond)
936 2403 aaronmk
    def invalid2null(in_col, value):
937 2409 aaronmk
        ignore(in_col, value)
938 2403 aaronmk
        update(db, in_table, [(in_col, None)],
939
            sql_gen.ColValueCond(in_col, value))
940 2245 aaronmk
941 2206 aaronmk
    # Do inserts and selects
942 2257 aaronmk
    join_cols = {}
943 2404 aaronmk
    insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
944
    insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
945 2206 aaronmk
    while True:
946 2303 aaronmk
        has_joins = join_cols != {}
947
948 2305 aaronmk
        # Prepare to insert new rows
949 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
950 2403 aaronmk
        insert_args = dict(recover=True, cacheable=False)
951 2303 aaronmk
        if has_joins:
952 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
953 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
954
                sql_gen.filter_out))
955
        else:
956 2404 aaronmk
            insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
957 2303 aaronmk
958 2450 aaronmk
        log_debug('Inserting new rows')
959 2206 aaronmk
        try:
960
            cur = insert_select(db, out_table, mapping.keys(),
961 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
962 2357 aaronmk
            break # insert successful
963 2206 aaronmk
        except DuplicateKeyException, e:
964 2309 aaronmk
            log_exc(e)
965
966 2258 aaronmk
            old_join_cols = join_cols.copy()
967 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
968 2450 aaronmk
            log_debug('Ignoring existing rows, comparing on '+str(join_cols))
969 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
970 2230 aaronmk
        except NullValueException, e:
971 2309 aaronmk
            log_exc(e)
972
973 2230 aaronmk
            out_col, = e.cols
974
            try: in_col = mapping[out_col]
975 2356 aaronmk
            except KeyError:
976 2451 aaronmk
                log_debug('Missing mapping for NOT NULL '+out_col)
977
                remove_all_rows()
978 2403 aaronmk
            else: remove_rows(in_col, None)
979 2243 aaronmk
        except FunctionValueException, e:
980 2309 aaronmk
            log_exc(e)
981
982 2344 aaronmk
            assert e.name == out_table.name
983 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
984 2403 aaronmk
            invalid2null(mapping[out_col], e.value)
985 2429 aaronmk
        except DatabaseErrors, e:
986
            log_exc(e)
987
988 2451 aaronmk
            msg = 'No handler for exception: '+exc.str_(e, first_line_only=True)
989
            warnings.warn(DbWarning(msg))
990
            log_debug(msg)
991
            remove_all_rows()
992 2358 aaronmk
        # after exception handled, rerun loop with additional constraints
993 2132 aaronmk
994 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
995
        row_ct_ref[0] += cur.rowcount
996
997
    if has_joins:
998
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
999 2450 aaronmk
        log_debug('Getting output pkeys of existing/inserted rows')
1000 2420 aaronmk
        insert_into_pkeys(select_joins, pkeys_cols)
1001 2357 aaronmk
    else:
1002 2404 aaronmk
        add_row_num(db, insert_out_pkeys) # for joining with input pkeys
1003 2357 aaronmk
1004 2450 aaronmk
        log_debug('Getting input pkeys for rows in insert')
1005 2357 aaronmk
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
1006 2404 aaronmk
            into=insert_in_pkeys)
1007
        add_row_num(db, insert_in_pkeys) # for joining with output pkeys
1008 2357 aaronmk
1009 2428 aaronmk
        assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
1010
            insert_in_pkeys)
1011
1012 2450 aaronmk
        log_debug('Joining together output and input pkeys')
1013 2404 aaronmk
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
1014 2357 aaronmk
            {row_num_col: sql_gen.join_same_not_null})]
1015 2420 aaronmk
        insert_into_pkeys(pkey_joins, pkeys_names)
1016 2357 aaronmk
1017 2450 aaronmk
    log_debug('Adding pkey on returned pkeys table to enable fast joins')
1018 2407 aaronmk
    index_pkey(db, pkeys)
1019
1020 2450 aaronmk
    log_debug("Setting missing rows' pkeys to NULL")
1021 2387 aaronmk
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
1022 2357 aaronmk
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
1023
        # must use join_same_not_null or query will take forever
1024 2420 aaronmk
    insert_into_pkeys(missing_rows_joins,
1025
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)])
1026 2357 aaronmk
1027 2428 aaronmk
    assert table_row_count(db, pkeys) == table_row_count(db, in_table)
1028
1029 2387 aaronmk
    return sql_gen.Col(out_pkey, pkeys)
1030 2115 aaronmk
1031
##### Data cleanup
1032
1033 2290 aaronmk
def cleanup_table(db, table, cols):
1034 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
1035
1036 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
1037 2115 aaronmk
    cols = map(esc_name_, cols)
1038
1039
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
1040
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
1041
            for col in cols))),
1042
        dict(null0='', null1=r'\N'))