Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3 3534 aaronmk
import copy
4 4995 aaronmk
import csv
5 3431 aaronmk
import operator
6 3714 aaronmk
import warnings
7 3431 aaronmk
8 4995 aaronmk
import csvs
9 3077 aaronmk
import exc
10
import dicts
11
import sql
12
import sql_gen
13
import strings
14
import util
15
16 3645 aaronmk
##### Exceptions
17
18
# Can't use built-in SyntaxError because it stringifies to only the first line
19
class SyntaxError(Exception): pass
20
21 3081 aaronmk
##### Data cleanup
22
23 4915 aaronmk
null_strs = ['', '-', r'\N', 'NULL', 'UNKNOWN', 'nulo']
24 4209 aaronmk
25 4447 aaronmk
def cleanup_table(db, table):
26 3081 aaronmk
    table = sql_gen.as_Table(table)
27 5384 aaronmk
    cols = filter(lambda c: sql_gen.is_text_col(db, c),
28
        sql.table_cols(db, table))
29 5394 aaronmk
    try: pkey_col = sql.table_pkey_col(db, table)
30
    except sql.DoesNotExistException: pass
31
    else:
32
        try: cols.remove(pkey_col)
33
        except ValueError: pass
34 4928 aaronmk
    if not cols: return
35 3081 aaronmk
36 4993 aaronmk
    db.log_debug('Cleaning up table', level=1.5)
37
38 4209 aaronmk
    expr = 'trim(both from %s)'
39
    for null in null_strs: expr = 'nullif('+expr+', '+db.esc_value(null)+')'
40
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db))) for v in cols]
41 3081 aaronmk
42 4444 aaronmk
    while True:
43
        try:
44
            sql.update(db, table, changes, in_place=True, recover=True)
45
            break # successful
46
        except sql.NullValueException, e:
47 4457 aaronmk
            db.log_debug('Caught exception: '+exc.str_(e))
48 4444 aaronmk
            col, = e.cols
49
            sql.drop_not_null(db, col)
50 4992 aaronmk
51
    db.log_debug('Vacuuming and reanalyzing table', level=1.5)
52
    sql.vacuum(db, table)
53 3081 aaronmk
54 3078 aaronmk
##### Error tracking
55
56
def track_data_error(db, errors_table, cols, value, error_code, error):
57
    '''
58
    @param errors_table If None, does nothing.
59
    '''
60
    if errors_table == None or cols == (): return
61
62
    for col in cols:
63
        try:
64
            sql.insert(db, errors_table, dict(column=col.name, value=value,
65
                error_code=error_code, error=error), recover=True,
66
                cacheable=True, log_level=4)
67
        except sql.DuplicateKeyException: pass
68
69 3506 aaronmk
class ExcToErrorsTable(sql_gen.ExcToWarning):
70
    '''Handles an exception by saving it or converting it to a warning.'''
71 3511 aaronmk
    def __init__(self, return_, srcs, errors_table, value=None):
72 3506 aaronmk
        '''
73
        @param return_ See sql_gen.ExcToWarning
74
        @param srcs The column names for the errors table
75
        @param errors_table None|sql_gen.Table
76 3511 aaronmk
        @param value The value (or an expression for it) that caused the error
77 3506 aaronmk
        @pre The invalid value must be in a local variable "value" of type text.
78
        '''
79
        sql_gen.ExcToWarning.__init__(self, return_)
80
81 3511 aaronmk
        value = sql_gen.as_Code(value)
82
83 3506 aaronmk
        self.srcs = srcs
84
        self.errors_table = errors_table
85 3511 aaronmk
        self.value = value
86 3501 aaronmk
87 3506 aaronmk
    def to_str(self, db):
88
        if not self.srcs or self.errors_table == None:
89
            return sql_gen.ExcToWarning.to_str(self, db)
90
91 3459 aaronmk
        errors_table_cols = map(sql_gen.Col,
92
            ['column', 'value', 'error_code', 'error'])
93 3465 aaronmk
        col_names_query = sql.mk_select(db, sql_gen.NamedValues('c', None,
94 3506 aaronmk
            [[c.name] for c in self.srcs]), order_by=None)
95
        insert_query = sql.mk_insert_select(db, self.errors_table,
96
            errors_table_cols,
97 3465 aaronmk
            sql_gen.Values(errors_table_cols).to_str(db))+';\n'
98 3506 aaronmk
        return '''\
99 3459 aaronmk
-- Save error in errors table.
100
DECLARE
101
    error_code text := SQLSTATE;
102
    error text := SQLERRM;
103 3511 aaronmk
    value text := '''+self.value.to_str(db)+''';
104 3529 aaronmk
    "column" text;
105 3459 aaronmk
BEGIN
106
    -- Insert the value and error for *each* source column.
107 3529 aaronmk
'''+strings.indent(sql_gen.RowExcIgnore(None, col_names_query, insert_query,
108 3467 aaronmk
    row_var=errors_table_cols[0]).to_str(db))+'''
109 3459 aaronmk
END;
110 3501 aaronmk
111 3506 aaronmk
'''+self.return_.to_str(db)
112 3459 aaronmk
113 3507 aaronmk
def data_exception_handler(*args, **kw_args):
114 3506 aaronmk
    '''Handles a data_exception by saving it or converting it to a warning.
115
    For params, see ExcToErrorsTable().
116
    '''
117
    return sql_gen.data_exception_handler(ExcToErrorsTable(*args, **kw_args))
118
119 3078 aaronmk
def cast(db, type_, col, errors_table=None):
120
    '''Casts an (unrenamed) column or value.
121
    If errors_table set and col has srcs, saves errors in errors_table (using
122 3360 aaronmk
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
123 3078 aaronmk
    @param col str|sql_gen.Col|sql_gen.Literal
124
    @param errors_table None|sql_gen.Table|str
125
    '''
126
    col = sql_gen.as_Col(col)
127
128 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
129
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
130
131 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
132
133 3460 aaronmk
    function_name = strings.first_word(type_)
134 3459 aaronmk
    srcs = col.srcs
135 3508 aaronmk
    save_errors = errors_table != None and srcs
136
    if save_errors: # function will be unique for the given srcs
137 3750 aaronmk
        function_name = strings.ustr(sql_gen.FunctionCall(function_name,
138 3508 aaronmk
            *map(sql_gen.to_name_only_col, srcs)))
139 3078 aaronmk
    function = db.TempFunction(function_name)
140
141 3464 aaronmk
    # Create function definition
142
    modifiers = 'STRICT'
143
    if not save_errors: modifiers = 'IMMUTABLE '+modifiers
144 3511 aaronmk
    value_param = sql_gen.FunctionParam('value', 'text')
145
    handler = data_exception_handler('RETURN NULL;\n', srcs, errors_table,
146
        value_param.name)
147 3464 aaronmk
    body = sql_gen.CustomCode(handler.to_str(db, '''\
148 3467 aaronmk
/* The explicit cast to the return type is needed to make the cast happen
149
inside the try block. (Implicit casts to the return type happen at the end
150
of the function, outside any block.) */
151
RETURN value::'''+type_+''';
152 3464 aaronmk
'''))
153
    body.lang='plpgsql'
154 3500 aaronmk
    sql.define_func(db, sql_gen.FunctionDef(function, type_, body,
155 3511 aaronmk
        [value_param], modifiers))
156 3464 aaronmk
157 3078 aaronmk
    return sql_gen.FunctionCall(function, col)
158
159 3538 aaronmk
def func_wrapper_exception_handler(db, return_, args, errors_table):
160 3524 aaronmk
    '''Handles a function call's data_exceptions.
161
    Supports PL/Python functions.
162
    @param return_ See data_exception_handler()
163
    @param args [arg...] Function call's args
164
    @param errors_table See data_exception_handler()
165
    '''
166
    args = filter(sql_gen.has_srcs, args)
167
168
    srcs = sql_gen.cross_join_srcs(args)
169 3538 aaronmk
    value = sql_gen.merge_not_null(db, ',', args)
170 3524 aaronmk
    return sql_gen.NestedExcHandler(
171
        data_exception_handler(return_, srcs, errors_table, value)
172
        , sql_gen.plpythonu_error_handler
173
        )
174
175 3078 aaronmk
def cast_temp_col(db, type_, col, errors_table=None):
176
    '''Like cast(), but creates a new column with the cast values if the input
177
    is a column.
178
    @return The new column or cast value
179
    '''
180
    def cast_(col): return cast(db, type_, col, errors_table)
181
182
    try: col = sql_gen.underlying_col(col)
183
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
184
185
    table = col.table
186 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
187 3078 aaronmk
    expr = cast_(col)
188
189
    # Add column
190
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
191 3750 aaronmk
    sql.add_col(db, table, new_typed_col, comment=strings.urepr(col)+'::'+type_)
192 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
193
194 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
195 3078 aaronmk
196
    return new_col
197
198
def errors_table(db, table, if_exists=True):
199
    '''
200
    @param if_exists If set, returns None if the errors table doesn't exist
201
    @return None|sql_gen.Table
202
    '''
203
    table = sql_gen.as_Table(table)
204
    if table.srcs != (): table = table.srcs[0]
205
206
    errors_table = sql_gen.suffixed_table(table, '.errors')
207
    if if_exists and not sql.table_exists(db, errors_table): return None
208
    return errors_table
209
210 4436 aaronmk
def mk_errors_table(db, table):
211
    errors_table_ = errors_table(db, table, if_exists=False)
212 4557 aaronmk
    if sql.table_exists(db, errors_table_, cacheable=False): return
213 4436 aaronmk
214
    typed_cols = [
215
        sql_gen.TypedCol('column', 'text', nullable=False),
216
        sql_gen.TypedCol('value', 'text'),
217
        sql_gen.TypedCol('error_code', 'character varying(5)', nullable=False),
218
        sql_gen.TypedCol('error', 'text', nullable=False),
219
        ]
220
    sql.create_table(db, errors_table_, typed_cols, has_pkey=False)
221
    index_cols = ['column', 'value', 'error_code', 'error']
222
    sql.add_index(db, index_cols, errors_table_, unique=True)
223
224 3078 aaronmk
##### Import
225
226 5017 aaronmk
def append_csv(db, table, stream_info, stream, use_copy_from=True):
227 5337 aaronmk
    assert sql.table_col_names(db, table) == stream_info.header
228 5037 aaronmk
229 5017 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
230
231
    dialect = stream_info.dialect
232
    if csvs.is_tsv(dialect): use_copy_from = False
233
    if use_copy_from:
234
        log('Using COPY FROM')
235
236
        # Create COPY FROM statement
237
        copy_from = ('COPY '+table.to_str(db)+' FROM STDIN DELIMITER '
238
            +db.esc_value(dialect.delimiter)+' NULL '+db.esc_value(''))
239
        assert not csvs.is_tsv(dialect)
240
        copy_from += ' CSV'
241
        if dialect.quoting != csv.QUOTE_NONE:
242
            quote_str = db.esc_value(dialect.quotechar)
243
            copy_from += ' QUOTE '+quote_str
244
            if dialect.doublequote: copy_from += ' ESCAPE '+quote_str
245
        copy_from += ';\n'
246
247
        log(copy_from, level=2)
248
        db.db.cursor().copy_expert(copy_from, stream)
249
    else:
250
        log('Using INSERT')
251
        cols_ct = len(stream_info.header)
252 5164 aaronmk
        row_ct = 0
253
        inserted_row_ct = 0
254 5017 aaronmk
        for row in csvs.make_reader(stream, dialect):
255 5164 aaronmk
            row_ct += 1
256 5017 aaronmk
            row = map(strings.to_unicode, row)
257
            util.list_set_length(row, cols_ct) # truncate extra cols
258 5164 aaronmk
            if sql.insert(db, table, row, ignore=True, cacheable=False,
259
                log_level=5) != None:
260
                inserted_row_ct += 1
261
        log('Inserted '+str(inserted_row_ct)+' of '+str(row_ct)+' rows')
262 5017 aaronmk
263 5027 aaronmk
def import_csv(db, table, stream, use_copy_from=True):
264 4995 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
265
266
    # Get format info
267
    info = csvs.stream_info(stream, parse_header=True)
268
    col_names = map(strings.to_unicode, info.header)
269
    for i, col in enumerate(col_names): # replace empty column names
270
        if col == '': col_names[i] = 'column_'+str(i)
271
272
    # Select schema and escape names
273
    def esc_name(name): return db.esc_name(name)
274
275
    typed_cols = [sql_gen.TypedCol(v, 'text') for v in col_names]
276
277
    log('Creating table')
278 4999 aaronmk
    # Note that this is not rolled back if the import fails. Instead, it is
279
    # cached, and will not be re-run if the import is retried.
280 4995 aaronmk
    sql.create_table(db, table, typed_cols, has_pkey=False, col_indexes=False)
281
282 5001 aaronmk
    # Free memory used by deleted (rolled back) rows from any failed import.
283
    # This MUST be run so that the rows will be stored in inserted order, and
284
    # the row_num added after import will match up with the CSV's row order.
285 4999 aaronmk
    sql.truncate(db, table)
286
287 4995 aaronmk
    # Load the data
288 5025 aaronmk
    def load(): append_csv(db, table, info, stream, use_copy_from)
289
    if use_copy_from: sql.with_savepoint(db, load)
290
    else: load()
291 4995 aaronmk
292
    cleanup_table(db, table)
293
294 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
295
    '''Recovers from errors.
296
    Only works under PostgreSQL (uses INSERT RETURNING).
297
    '''
298 3633 aaronmk
    return put_table(db, table, [], row, row_ct_ref)
299 3077 aaronmk
300
def get(db, table, row, pkey, row_ct_ref=None, create=False):
301
    '''Recovers from errors'''
302
    try:
303
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
304
            recover=True))
305
    except StopIteration:
306
        if not create: raise
307
        return put(db, table, row, pkey, row_ct_ref) # insert new row
308
309
def is_func_result(col):
310
    return col.table.name.find('(') >= 0 and col.name == 'result'
311
312
def into_table_name(out_table, in_tables0, mapping, is_func):
313
    def in_col_str(in_col):
314
        in_col = sql_gen.remove_col_rename(in_col)
315
        if isinstance(in_col, sql_gen.Col):
316
            table = in_col.table
317
            if table == in_tables0:
318
                in_col = sql_gen.to_name_only_col(in_col)
319
            elif is_func_result(in_col): in_col = table # omit col name
320 3750 aaronmk
        return strings.ustr(in_col)
321 3077 aaronmk
322 4491 aaronmk
    str_ = strings.ustr(out_table)
323 3077 aaronmk
    if is_func:
324
        str_ += '('
325
326
        try: value_in_col = mapping['value']
327
        except KeyError:
328 4491 aaronmk
            str_ += ', '.join((strings.ustr(k)+'='+in_col_str(v)
329 3077 aaronmk
                for k, v in mapping.iteritems()))
330
        else: str_ += in_col_str(value_in_col)
331
332
        str_ += ')'
333
    else:
334
        out_col = 'rank'
335
        try: in_col = mapping[out_col]
336
        except KeyError: str_ += '_pkeys'
337
        else: # has a rank column, so hierarchical
338 4491 aaronmk
            str_ += '['+strings.ustr(out_col)+'='+in_col_str(in_col)+']'
339 3077 aaronmk
    return str_
340
341 3628 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, default=None,
342 3660 aaronmk
    col_defaults={}, on_error=exc.reraise):
343 3077 aaronmk
    '''Recovers from errors.
344
    Only works under PostgreSQL (uses INSERT RETURNING).
345
    IMPORTANT: Must be run at the *beginning* of a transaction.
346
    @param in_tables The main input table to select from, followed by a list of
347
        tables to join with it using the main input table's pkey
348
    @param mapping dict(out_table_col=in_table_col, ...)
349
        * out_table_col: str (*not* sql_gen.Col)
350
        * in_table_col: sql_gen.Col|literal-value
351
    @param default The *output* column to use as the pkey for missing rows.
352
        If this output column does not exist in the mapping, uses None.
353 3618 aaronmk
    @param col_defaults Default values for required columns.
354 3077 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
355
    '''
356 3474 aaronmk
    import psycopg2.extensions
357
358 3077 aaronmk
    out_table = sql_gen.as_Table(out_table)
359
360
    def log_debug(msg): db.log_debug(msg, level=1.5)
361
    def col_ustr(str_):
362
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
363
364
    log_debug('********** New iteration **********')
365
    log_debug('Inserting these input columns into '+strings.as_tt(
366
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
367
368
    is_function = sql.function_exists(db, out_table)
369
370 5192 aaronmk
    if is_function: row_ct_ref = None # only track inserted rows
371
372 4984 aaronmk
    # Warn if inserting empty table rows
373
    if not mapping and not is_function: # functions with no args OK
374
        warnings.warn(UserWarning('Inserting empty table row(s)'))
375
376 3077 aaronmk
    if is_function: out_pkey = 'result'
377 5388 aaronmk
    else: out_pkey = sql.pkey_name(db, out_table, recover=True)
378 3077 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
379
380 5069 aaronmk
    in_tables_ = copy.copy(in_tables) # don't modify input!
381 3432 aaronmk
    try: in_tables0 = in_tables_.pop(0) # first table is separate
382
    except IndexError: in_tables0 = None
383
    else:
384 5388 aaronmk
        in_pkey = sql.pkey_name(db, in_tables0, recover=True)
385 3432 aaronmk
        in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
386 3431 aaronmk
387
    # Determine if can use optimization for only literal values
388
    is_literals = not reduce(operator.or_, map(sql_gen.is_table_col,
389 3434 aaronmk
        mapping.values()), False)
390 3431 aaronmk
    is_literals_or_function = is_literals or is_function
391
392 3432 aaronmk
    if in_tables0 == None: errors_table_ = None
393
    else: errors_table_ = errors_table(db, in_tables0)
394 3431 aaronmk
395
    # Create input joins from list of input tables
396 3077 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
397
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
398
399 5381 aaronmk
    orig_mapping = mapping.copy()
400 3433 aaronmk
    if mapping == {} and not is_function: # need >= one column for INSERT SELECT
401
        mapping = {out_pkey: None} # ColDict will replace with default value
402
403 3431 aaronmk
    if not is_literals:
404 3628 aaronmk
        into = sql_gen.as_Table(into_table_name(out_table, in_tables0, mapping,
405
            is_function))
406 4484 aaronmk
        # Ensure into's out_pkey is different from in_pkey by prepending table
407 4495 aaronmk
        if is_function: into_out_pkey = out_pkey
408
        else: into_out_pkey = strings.ustr(out_pkey_col)
409 3431 aaronmk
410
        # Set column sources
411
        in_cols = filter(sql_gen.is_table_col, mapping.values())
412
        for col in in_cols:
413
            if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
414
415
        log_debug('Joining together input tables into temp table')
416
        # Place in new table so don't modify input and for speed
417
        in_table = sql_gen.Table('in')
418
        mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
419
            in_cols, preserve=[in_pkey_col]))
420
        input_joins = [in_table]
421
        db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
422 3077 aaronmk
423 3692 aaronmk
    # Wrap mapping in a sql_gen.ColDict.
424
    # sql_gen.ColDict sanitizes both keys and values passed into it.
425
    # Do after applying dicts.join() because that returns a plain dict.
426 3077 aaronmk
    mapping = sql_gen.ColDict(db, out_table, mapping)
427
428 5239 aaronmk
    # Save all rows since in_table may have rows deleted
429 3431 aaronmk
    if is_literals: pass
430
    elif is_function: full_in_table = in_table
431 3386 aaronmk
    else:
432
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
433 5239 aaronmk
        sql.run_query_into(db, sql.mk_select(db, in_table, None, order_by=None),
434
            into=full_in_table, add_pkey_=True)
435 3287 aaronmk
436 3077 aaronmk
    pkeys_table_exists_ref = [False]
437 3499 aaronmk
    def insert_into_pkeys(joins, cols=None, limit=None, **kw_args):
438 3477 aaronmk
        query = sql.mk_select(db, joins, cols, order_by=None, limit=limit)
439 3077 aaronmk
        if pkeys_table_exists_ref[0]:
440 4484 aaronmk
            sql.insert_select(db, into, [in_pkey, into_out_pkey], query,
441
                **kw_args)
442 3077 aaronmk
        else:
443 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
444 3077 aaronmk
            pkeys_table_exists_ref[0] = True
445
446 3418 aaronmk
    def mk_main_select(joins, cols):
447 5375 aaronmk
        return sql.mk_select(db, joins, cols, order_by=None)
448 3418 aaronmk
449 3431 aaronmk
    if is_literals: insert_in_table = None
450
    else:
451
        insert_in_table = in_table
452
        insert_in_tables = [insert_in_table]
453 3352 aaronmk
    join_cols = sql_gen.ColDict(db, out_table)
454 3077 aaronmk
455
    exc_strs = set()
456
    def log_exc(e):
457
        e_str = exc.str_(e, first_line_only=True)
458
        log_debug('Caught exception: '+e_str)
459 3552 aaronmk
        if e_str in exc_strs: # avoid infinite loops
460
            log_debug('Exception already seen, handler broken')
461
            on_error(e)
462
            remove_all_rows()
463
        else: exc_strs.add(e_str)
464 3077 aaronmk
465 5377 aaronmk
    ignore_all_ref = [False]
466 3077 aaronmk
    def remove_all_rows():
467
        log_debug('Ignoring all rows')
468 5377 aaronmk
        ignore_all_ref[0] = True # just return the default value column
469 3077 aaronmk
470 3352 aaronmk
    def ignore_cond(cond, e):
471 3704 aaronmk
        if is_literals: remove_all_rows()
472
        else:
473
            out_table_cols = sql_gen.ColDict(db, out_table)
474
            out_table_cols.update(util.dict_subset_right_join({},
475 5337 aaronmk
                sql.table_col_names(db, out_table)))
476 3704 aaronmk
477
            in_cols = []
478 5367 aaronmk
            cond = sql_gen.map_expr(db, cond, mapping, in_cols)
479
            cond = sql_gen.map_expr(db, cond, out_table_cols)
480 3704 aaronmk
481
            track_data_error(db, errors_table_, sql_gen.cols_srcs(in_cols),
482
                None, e.cause.pgcode,
483
                strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
484
485
            not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
486 5369 aaronmk
            log_debug("Ignoring rows that don't satisfy "+strings.as_tt(cond))
487 5368 aaronmk
            assert cond != sql_gen.true_expr # we know the constraint failed
488
            if cond == sql_gen.false_expr: remove_all_rows()
489
            else: sql.delete(db, insert_in_table, not_cond)
490 3352 aaronmk
491 3294 aaronmk
    not_null_cols = set()
492 3077 aaronmk
    def ignore(in_col, value, e):
493 3630 aaronmk
        if sql_gen.is_table_col(in_col):
494
            in_col = sql_gen.with_table(in_col, insert_in_table)
495
496
            track_data_error(db, errors_table_, in_col.srcs, value,
497
                e.cause.pgcode, e.cause.pgerror)
498
499
            sql.add_index(db, in_col, insert_in_table) # enable fast filtering
500
            if value != None and in_col not in not_null_cols:
501 4492 aaronmk
                log_debug('Replacing invalid value '
502
                    +strings.as_tt(strings.urepr(value))+' with NULL in column '
503
                    +strings.as_tt(in_col.to_str(db)))
504 3630 aaronmk
                sql.update(db, insert_in_table, [(in_col, None)],
505
                    sql_gen.ColValueCond(in_col, value))
506
            else:
507 3637 aaronmk
                log_debug('Ignoring rows with '+strings.as_tt(in_col.to_str(db))
508 4492 aaronmk
                    +' = '+strings.as_tt(strings.urepr(value)))
509 3630 aaronmk
                sql.delete(db, insert_in_table,
510
                    sql_gen.ColValueCond(in_col, value))
511
                if value == None: not_null_cols.add(in_col)
512 3293 aaronmk
        else:
513 3630 aaronmk
            assert isinstance(in_col, sql_gen.NamedCol)
514 3684 aaronmk
            in_value = sql_gen.remove_col_rename(in_col)
515
            assert sql_gen.is_literal(in_value)
516
            if value == in_value.value:
517
                if value != None:
518
                    log_debug('Replacing invalid literal '
519
                        +strings.as_tt(in_col.to_str(db))+' with NULL')
520
                    mapping[in_col.name] = None
521
                else:
522
                    remove_all_rows()
523
            # otherwise, all columns were being ignore()d because the specific
524
            # column couldn't be identified, and this was not the invalid column
525 3077 aaronmk
526 3431 aaronmk
    if not is_literals:
527
        def insert_pkeys_table(which):
528
            return sql_gen.Table(sql_gen.concat(in_table.name,
529
                '_insert_'+which+'_pkeys'))
530
        insert_out_pkeys = insert_pkeys_table('out')
531
        insert_in_pkeys = insert_pkeys_table('in')
532 3077 aaronmk
533 3918 aaronmk
    def mk_func_call():
534 3550 aaronmk
        args = dict(((k.name, v) for k, v in mapping.iteritems()))
535 4484 aaronmk
        return sql_gen.FunctionCall(out_table, **args), args
536 3550 aaronmk
537 3918 aaronmk
    if is_function and not is_literals:
538
        log_debug('Defining wrapper function')
539
540
        func_call, args = mk_func_call()
541 4484 aaronmk
        func_call = sql_gen.NamedCol(into_out_pkey, func_call)
542 3918 aaronmk
543
        # Create empty pkeys table so its row type can be used
544
        insert_into_pkeys(input_joins, [in_pkey_col, func_call], limit=0,
545
            recover=True)
546 4484 aaronmk
        result_type = db.col_info(sql_gen.Col(into_out_pkey, into)).type
547 3918 aaronmk
548
        ## Create error handling wrapper function
549
550
        wrapper = db.TempFunction(sql_gen.concat(into.name, '_wrap'))
551
552
        select_cols = [in_pkey_col]+args.values()
553
        row_var = copy.copy(sql_gen.row_var)
554
        row_var.set_srcs([in_table])
555
        in_pkey_var = sql_gen.Col(in_pkey, row_var)
556
557
        args = dict(((k, sql_gen.with_table(v, row_var))
558
            for k, v in args.iteritems()))
559
        func_call = sql_gen.FunctionCall(out_table, **args)
560
561
        def mk_return(result):
562
            return sql_gen.ReturnQuery(sql.mk_select(db,
563
                fields=[in_pkey_var, result], explain=False))
564
        exc_handler = func_wrapper_exception_handler(db,
565
            mk_return(sql_gen.Cast(result_type, None)), args.values(),
566
            errors_table_)
567
568
        sql.define_func(db, sql_gen.FunctionDef(wrapper, sql_gen.SetOf(into),
569
            sql_gen.RowExcIgnore(sql_gen.RowType(in_table),
570
                sql.mk_select(db, input_joins, order_by=None),
571
                mk_return(func_call), exc_handler=exc_handler)
572
            ))
573
        wrapper_table = sql_gen.FunctionCall(wrapper)
574 3550 aaronmk
575 5239 aaronmk
    missing_msg = None
576
577 3077 aaronmk
    # Do inserts and selects
578
    while True:
579 3473 aaronmk
        has_joins = join_cols != {}
580
581 5377 aaronmk
        if ignore_all_ref[0]: break # unrecoverable error, so don't do main case
582 3077 aaronmk
583
        # Prepare to insert new rows
584 3918 aaronmk
        if is_function:
585
            log_debug('Calling function on input rows')
586
            if is_literals: func_call, args = mk_func_call()
587 3077 aaronmk
        else:
588 3550 aaronmk
            log_debug('Trying to insert new rows')
589 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
590
            if has_joins:
591
                insert_args.update(dict(ignore=True))
592
            else:
593 3431 aaronmk
                insert_args.update(dict(returning=out_pkey))
594
                if not is_literals:
595
                    insert_args.update(dict(into=insert_out_pkeys))
596 3291 aaronmk
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
597
                c, insert_in_table) for c in mapping.values()])
598 3077 aaronmk
599 3292 aaronmk
        try:
600
            cur = None
601 3077 aaronmk
            if is_function:
602 3917 aaronmk
                if is_literals:
603
                    cur = sql.select(db, fields=[func_call], recover=True,
604
                        cacheable=True)
605 3499 aaronmk
                else: insert_into_pkeys(wrapper_table, recover=True)
606 3077 aaronmk
            else:
607 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
608 3077 aaronmk
                    main_select, **insert_args)
609
            break # insert successful
610
        except sql.MissingCastException, e:
611
            log_exc(e)
612
613
            type_ = e.type
614 4140 aaronmk
            if e.col == None: out_cols = mapping.keys()
615
            else: out_cols = [e.col]
616 3077 aaronmk
617 4140 aaronmk
            for out_col in out_cols:
618 4171 aaronmk
                log_debug('Casting '+strings.as_tt(strings.repr_no_u(out_col))
619 4140 aaronmk
                    +' input to '+strings.as_tt(type_))
620
                in_col = mapping[out_col]
621
                while True:
622
                    try:
623
                        mapping[out_col] = cast_temp_col(db, type_, in_col,
624
                            errors_table_)
625
                        break # cast successful
626
                    except sql.InvalidValueException, e:
627
                        log_exc(e)
628
629
                        ignore(in_col, e.value, e)
630 3077 aaronmk
        except sql.DuplicateKeyException, e:
631
            log_exc(e)
632
633 3274 aaronmk
            # Different rows violating different unique constraints not
634
            # supported
635
            assert not join_cols
636
637 3077 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
638
            log_debug('Ignoring existing rows, comparing on these columns:\n'
639
                +strings.as_inline_table(join_cols, ustr=col_ustr))
640 3102 aaronmk
641 3431 aaronmk
            if is_literals:
642
                return sql.value(sql.select(db, out_table, [out_pkey_col],
643 4025 aaronmk
                    join_cols, order_by=None))
644 3431 aaronmk
645 3102 aaronmk
            # Uniquify input table to avoid internal duplicate keys
646
            insert_in_table = sql.distinct_table(db, insert_in_table,
647 3358 aaronmk
                join_cols.values())
648 3144 aaronmk
            insert_in_tables.append(insert_in_table)
649 3077 aaronmk
        except sql.NullValueException, e:
650
            log_exc(e)
651
652
            out_col, = e.cols
653
            try: in_col = mapping[out_col]
654 3618 aaronmk
            except KeyError, e:
655
                try: in_col = mapping[out_col] = col_defaults[out_col]
656
                except KeyError:
657 5239 aaronmk
                    missing_msg = 'Missing mapping for NOT NULL column '+out_col
658
                    log_debug(missing_msg)
659 3618 aaronmk
                    remove_all_rows()
660 3294 aaronmk
            else: ignore(in_col, None, e)
661 3352 aaronmk
        except sql.CheckException, e:
662
            log_exc(e)
663
664
            ignore_cond(e.cond, e)
665 3413 aaronmk
        except sql.InvalidValueException, e:
666
            log_exc(e)
667
668
            for in_col in mapping.values(): ignore(in_col, e.value, e)
669 3474 aaronmk
        except psycopg2.extensions.TransactionRollbackError, e:
670
            log_exc(e)
671
            # retry
672 3077 aaronmk
        except sql.DatabaseErrors, e:
673
            log_exc(e)
674
675
            log_debug('No handler for exception')
676
            on_error(e)
677
            remove_all_rows()
678
        # after exception handled, rerun loop with additional constraints
679
680 5239 aaronmk
    # Resolve default value column
681
    if default != None:
682 5381 aaronmk
        if ignore_all_ref[0]: mapping.update(orig_mapping) # use input cols
683 5239 aaronmk
        try: default = mapping[default]
684
        except KeyError:
685
            db.log_debug('Default value column '
686
                +strings.as_tt(strings.repr_no_u(default))
687
                +' does not exist in mapping, falling back to None', level=2.1)
688
            default = None
689 5380 aaronmk
        else: default = sql_gen.remove_col_rename(default)
690 5239 aaronmk
691
    if missing_msg != None and default == None:
692
        warnings.warn(UserWarning(missing_msg))
693
        # not an error because sometimes the mappings include
694
        # extra tables which aren't used by the dataset
695
696
    # Handle unrecoverable errors
697 5377 aaronmk
    if ignore_all_ref[0]:
698 5373 aaronmk
        log_debug('Returning default: '+strings.as_tt(strings.urepr(default)))
699
        return default
700 5239 aaronmk
701 3077 aaronmk
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
702
        row_ct_ref[0] += cur.rowcount
703
704 3530 aaronmk
    if is_literals: return sql.value(cur)
705
706
    if is_function: pass # pkeys table already created
707 3077 aaronmk
    elif has_joins:
708
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
709
        log_debug('Getting output table pkeys of existing/inserted rows')
710 4484 aaronmk
        insert_into_pkeys(select_joins, [in_pkey_col,
711
            sql_gen.NamedCol(into_out_pkey, out_pkey_col)])
712 3077 aaronmk
    else:
713
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
714
715
        log_debug('Getting input table pkeys of inserted rows')
716 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
717
        # since the SELECT query is identical to the one used in INSERT SELECT,
718
        # its rows will be retrieved in the same order.
719 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
720
            into=insert_in_pkeys)
721
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
722
723
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
724
            db, insert_in_pkeys)
725
726
        log_debug('Combining output and input pkeys in inserted order')
727
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
728
            {sql.row_num_col: sql_gen.join_same_not_null})]
729 4484 aaronmk
        in_col = sql_gen.Col(in_pkey, insert_in_pkeys)
730
        out_col = sql_gen.NamedCol(into_out_pkey,
731
            sql_gen.Col(out_pkey, insert_out_pkeys))
732
        insert_into_pkeys(pkey_joins, [in_col, out_col])
733 3077 aaronmk
734
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
735
736 5374 aaronmk
    if not is_function: # is_function doesn't leave holes
737 3187 aaronmk
        log_debug('Setting pkeys of missing rows to '
738 4492 aaronmk
            +strings.as_tt(strings.urepr(default)))
739 5380 aaronmk
        if sql_gen.is_table_col(default):
740
            default = sql_gen.with_table(default, full_in_table)
741 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
742 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
743
            # must use join_same_not_null or query will take forever
744
        insert_into_pkeys(missing_rows_joins,
745 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
746 4484 aaronmk
            sql_gen.NamedCol(into_out_pkey, default)])
747 3187 aaronmk
    # otherwise, there is already an entry for every row
748 3077 aaronmk
749 3530 aaronmk
    assert (sql.table_row_count(db, into)
750
        == sql.table_row_count(db, full_in_table))
751
752
    sql.empty_temp(db, insert_in_tables+[full_in_table])
753
754
    srcs = []
755 3619 aaronmk
    if is_function: srcs = sql_gen.cols_srcs(in_cols)
756 4484 aaronmk
    return sql_gen.Col(into_out_pkey, into, srcs)