Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3 3534 aaronmk
import copy
4 4995 aaronmk
import csv
5 3431 aaronmk
import operator
6 3714 aaronmk
import warnings
7 3431 aaronmk
8 4995 aaronmk
import csvs
9 3077 aaronmk
import exc
10
import dicts
11
import sql
12
import sql_gen
13
import strings
14
import util
15
16 3645 aaronmk
##### Exceptions
17
18
# Can't use built-in SyntaxError because it stringifies to only the first line
19
class SyntaxError(Exception): pass
20
21 3081 aaronmk
##### Data cleanup
22
23 4915 aaronmk
null_strs = ['', '-', r'\N', 'NULL', 'UNKNOWN', 'nulo']
24 4209 aaronmk
25 4447 aaronmk
def cleanup_table(db, table):
26 3081 aaronmk
    table = sql_gen.as_Table(table)
27 5384 aaronmk
    cols = filter(lambda c: sql_gen.is_text_col(db, c),
28
        sql.table_cols(db, table))
29 5394 aaronmk
    try: pkey_col = sql.table_pkey_col(db, table)
30
    except sql.DoesNotExistException: pass
31
    else:
32
        try: cols.remove(pkey_col)
33
        except ValueError: pass
34 4928 aaronmk
    if not cols: return
35 3081 aaronmk
36 4993 aaronmk
    db.log_debug('Cleaning up table', level=1.5)
37
38 4209 aaronmk
    expr = 'trim(both from %s)'
39
    for null in null_strs: expr = 'nullif('+expr+', '+db.esc_value(null)+')'
40
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db))) for v in cols]
41 3081 aaronmk
42 4444 aaronmk
    while True:
43
        try:
44
            sql.update(db, table, changes, in_place=True, recover=True)
45
            break # successful
46
        except sql.NullValueException, e:
47 4457 aaronmk
            db.log_debug('Caught exception: '+exc.str_(e))
48 4444 aaronmk
            col, = e.cols
49
            sql.drop_not_null(db, col)
50 4992 aaronmk
51
    db.log_debug('Vacuuming and reanalyzing table', level=1.5)
52
    sql.vacuum(db, table)
53 3081 aaronmk
54 3078 aaronmk
##### Error tracking
55
56
def track_data_error(db, errors_table, cols, value, error_code, error):
57
    '''
58
    @param errors_table If None, does nothing.
59
    '''
60
    if errors_table == None or cols == (): return
61
62
    for col in cols:
63
        try:
64
            sql.insert(db, errors_table, dict(column=col.name, value=value,
65
                error_code=error_code, error=error), recover=True,
66
                cacheable=True, log_level=4)
67
        except sql.DuplicateKeyException: pass
68
69 3506 aaronmk
class ExcToErrorsTable(sql_gen.ExcToWarning):
70
    '''Handles an exception by saving it or converting it to a warning.'''
71 3511 aaronmk
    def __init__(self, return_, srcs, errors_table, value=None):
72 3506 aaronmk
        '''
73
        @param return_ See sql_gen.ExcToWarning
74
        @param srcs The column names for the errors table
75
        @param errors_table None|sql_gen.Table
76 3511 aaronmk
        @param value The value (or an expression for it) that caused the error
77 3506 aaronmk
        @pre The invalid value must be in a local variable "value" of type text.
78
        '''
79
        sql_gen.ExcToWarning.__init__(self, return_)
80
81 3511 aaronmk
        value = sql_gen.as_Code(value)
82
83 3506 aaronmk
        self.srcs = srcs
84
        self.errors_table = errors_table
85 3511 aaronmk
        self.value = value
86 3501 aaronmk
87 3506 aaronmk
    def to_str(self, db):
88
        if not self.srcs or self.errors_table == None:
89
            return sql_gen.ExcToWarning.to_str(self, db)
90
91 3459 aaronmk
        errors_table_cols = map(sql_gen.Col,
92
            ['column', 'value', 'error_code', 'error'])
93 3465 aaronmk
        col_names_query = sql.mk_select(db, sql_gen.NamedValues('c', None,
94 3506 aaronmk
            [[c.name] for c in self.srcs]), order_by=None)
95
        insert_query = sql.mk_insert_select(db, self.errors_table,
96
            errors_table_cols,
97 3465 aaronmk
            sql_gen.Values(errors_table_cols).to_str(db))+';\n'
98 3506 aaronmk
        return '''\
99 3459 aaronmk
-- Save error in errors table.
100
DECLARE
101
    error_code text := SQLSTATE;
102
    error text := SQLERRM;
103 3511 aaronmk
    value text := '''+self.value.to_str(db)+''';
104 3529 aaronmk
    "column" text;
105 3459 aaronmk
BEGIN
106
    -- Insert the value and error for *each* source column.
107 3529 aaronmk
'''+strings.indent(sql_gen.RowExcIgnore(None, col_names_query, insert_query,
108 3467 aaronmk
    row_var=errors_table_cols[0]).to_str(db))+'''
109 3459 aaronmk
END;
110 3501 aaronmk
111 3506 aaronmk
'''+self.return_.to_str(db)
112 3459 aaronmk
113 3507 aaronmk
def data_exception_handler(*args, **kw_args):
114 3506 aaronmk
    '''Handles a data_exception by saving it or converting it to a warning.
115
    For params, see ExcToErrorsTable().
116
    '''
117
    return sql_gen.data_exception_handler(ExcToErrorsTable(*args, **kw_args))
118
119 3078 aaronmk
def cast(db, type_, col, errors_table=None):
120
    '''Casts an (unrenamed) column or value.
121
    If errors_table set and col has srcs, saves errors in errors_table (using
122 3360 aaronmk
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
123 3078 aaronmk
    @param col str|sql_gen.Col|sql_gen.Literal
124
    @param errors_table None|sql_gen.Table|str
125
    '''
126
    col = sql_gen.as_Col(col)
127
128 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
129
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
130
131 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
132
133 3460 aaronmk
    function_name = strings.first_word(type_)
134 3459 aaronmk
    srcs = col.srcs
135 3508 aaronmk
    save_errors = errors_table != None and srcs
136
    if save_errors: # function will be unique for the given srcs
137 3750 aaronmk
        function_name = strings.ustr(sql_gen.FunctionCall(function_name,
138 3508 aaronmk
            *map(sql_gen.to_name_only_col, srcs)))
139 3078 aaronmk
    function = db.TempFunction(function_name)
140
141 3464 aaronmk
    # Create function definition
142
    modifiers = 'STRICT'
143
    if not save_errors: modifiers = 'IMMUTABLE '+modifiers
144 3511 aaronmk
    value_param = sql_gen.FunctionParam('value', 'text')
145
    handler = data_exception_handler('RETURN NULL;\n', srcs, errors_table,
146
        value_param.name)
147 3464 aaronmk
    body = sql_gen.CustomCode(handler.to_str(db, '''\
148 3467 aaronmk
/* The explicit cast to the return type is needed to make the cast happen
149
inside the try block. (Implicit casts to the return type happen at the end
150
of the function, outside any block.) */
151
RETURN value::'''+type_+''';
152 3464 aaronmk
'''))
153
    body.lang='plpgsql'
154 3500 aaronmk
    sql.define_func(db, sql_gen.FunctionDef(function, type_, body,
155 3511 aaronmk
        [value_param], modifiers))
156 3464 aaronmk
157 3078 aaronmk
    return sql_gen.FunctionCall(function, col)
158
159 3538 aaronmk
def func_wrapper_exception_handler(db, return_, args, errors_table):
160 3524 aaronmk
    '''Handles a function call's data_exceptions.
161
    Supports PL/Python functions.
162
    @param return_ See data_exception_handler()
163
    @param args [arg...] Function call's args
164
    @param errors_table See data_exception_handler()
165
    '''
166
    args = filter(sql_gen.has_srcs, args)
167
168
    srcs = sql_gen.cross_join_srcs(args)
169 3538 aaronmk
    value = sql_gen.merge_not_null(db, ',', args)
170 3524 aaronmk
    return sql_gen.NestedExcHandler(
171
        data_exception_handler(return_, srcs, errors_table, value)
172
        , sql_gen.plpythonu_error_handler
173
        )
174
175 3078 aaronmk
def cast_temp_col(db, type_, col, errors_table=None):
176
    '''Like cast(), but creates a new column with the cast values if the input
177
    is a column.
178
    @return The new column or cast value
179
    '''
180
    def cast_(col): return cast(db, type_, col, errors_table)
181
182
    try: col = sql_gen.underlying_col(col)
183
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
184
185
    table = col.table
186 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
187 3078 aaronmk
    expr = cast_(col)
188
189
    # Add column
190
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
191 3750 aaronmk
    sql.add_col(db, table, new_typed_col, comment=strings.urepr(col)+'::'+type_)
192 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
193
194 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
195 3078 aaronmk
196
    return new_col
197
198
def errors_table(db, table, if_exists=True):
199
    '''
200
    @param if_exists If set, returns None if the errors table doesn't exist
201
    @return None|sql_gen.Table
202
    '''
203
    table = sql_gen.as_Table(table)
204
    if table.srcs != (): table = table.srcs[0]
205
206
    errors_table = sql_gen.suffixed_table(table, '.errors')
207
    if if_exists and not sql.table_exists(db, errors_table): return None
208
    return errors_table
209
210 4436 aaronmk
def mk_errors_table(db, table):
211
    errors_table_ = errors_table(db, table, if_exists=False)
212 4557 aaronmk
    if sql.table_exists(db, errors_table_, cacheable=False): return
213 4436 aaronmk
214
    typed_cols = [
215
        sql_gen.TypedCol('column', 'text', nullable=False),
216
        sql_gen.TypedCol('value', 'text'),
217
        sql_gen.TypedCol('error_code', 'character varying(5)', nullable=False),
218
        sql_gen.TypedCol('error', 'text', nullable=False),
219
        ]
220
    sql.create_table(db, errors_table_, typed_cols, has_pkey=False)
221
    index_cols = ['column', 'value', 'error_code', 'error']
222
    sql.add_index(db, index_cols, errors_table_, unique=True)
223
224 3078 aaronmk
##### Import
225
226 5568 aaronmk
row_num_col_def = copy.copy(sql.row_num_col_def)
227
row_num_col_def.name = 'row_num'
228 5569 aaronmk
row_num_col_def.type = 'integer'
229 5568 aaronmk
230 5017 aaronmk
def append_csv(db, table, stream_info, stream, use_copy_from=True):
231 5337 aaronmk
    assert sql.table_col_names(db, table) == stream_info.header
232 5037 aaronmk
233 5017 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
234
235
    dialect = stream_info.dialect
236
    if use_copy_from:
237
        log('Using COPY FROM')
238
239 5572 aaronmk
        # Wrap in standardizing stream
240
        cols_ct = len(stream_info.header)
241
        stream = csvs.InputRewriter(csvs.ColCtFilter(csvs.make_reader(stream,
242
            dialect), cols_ct))
243
        dialect = stream.dialect # use default dialect
244
245 5017 aaronmk
        # Create COPY FROM statement
246
        copy_from = ('COPY '+table.to_str(db)+' FROM STDIN DELIMITER '
247
            +db.esc_value(dialect.delimiter)+' NULL '+db.esc_value(''))
248
        assert not csvs.is_tsv(dialect)
249
        copy_from += ' CSV'
250
        if dialect.quoting != csv.QUOTE_NONE:
251
            quote_str = db.esc_value(dialect.quotechar)
252
            copy_from += ' QUOTE '+quote_str
253
            if dialect.doublequote: copy_from += ' ESCAPE '+quote_str
254
        copy_from += ';\n'
255
256
        log(copy_from, level=2)
257 5578 aaronmk
        try: db.db.cursor().copy_expert(copy_from, stream)
258
        except Exception, e: sql.parse_exception(db, e, recover=True)
259 5017 aaronmk
    else:
260
        log('Using INSERT')
261
        cols_ct = len(stream_info.header)
262 5164 aaronmk
        row_ct = 0
263
        inserted_row_ct = 0
264 5017 aaronmk
        for row in csvs.make_reader(stream, dialect):
265 5164 aaronmk
            row_ct += 1
266 5017 aaronmk
            row = map(strings.to_unicode, row)
267
            util.list_set_length(row, cols_ct) # truncate extra cols
268 5164 aaronmk
            if sql.insert(db, table, row, ignore=True, cacheable=False,
269
                log_level=5) != None:
270
                inserted_row_ct += 1
271
        log('Inserted '+str(inserted_row_ct)+' of '+str(row_ct)+' rows')
272 5017 aaronmk
273 5027 aaronmk
def import_csv(db, table, stream, use_copy_from=True):
274 4995 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
275
276
    # Get format info
277
    info = csvs.stream_info(stream, parse_header=True)
278
    col_names = map(strings.to_unicode, info.header)
279
    for i, col in enumerate(col_names): # replace empty column names
280
        if col == '': col_names[i] = 'column_'+str(i)
281
282
    # Select schema and escape names
283
    def esc_name(name): return db.esc_name(name)
284
285
    typed_cols = [sql_gen.TypedCol(v, 'text') for v in col_names]
286
287
    log('Creating table')
288 4999 aaronmk
    # Note that this is not rolled back if the import fails. Instead, it is
289
    # cached, and will not be re-run if the import is retried.
290 4995 aaronmk
    sql.create_table(db, table, typed_cols, has_pkey=False, col_indexes=False)
291
292 5001 aaronmk
    # Free memory used by deleted (rolled back) rows from any failed import.
293
    # This MUST be run so that the rows will be stored in inserted order, and
294
    # the row_num added after import will match up with the CSV's row order.
295 4999 aaronmk
    sql.truncate(db, table)
296
297 4995 aaronmk
    # Load the data
298 5025 aaronmk
    def load(): append_csv(db, table, info, stream, use_copy_from)
299
    if use_copy_from: sql.with_savepoint(db, load)
300
    else: load()
301 4995 aaronmk
302
    cleanup_table(db, table)
303
304 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
305
    '''Recovers from errors.
306
    Only works under PostgreSQL (uses INSERT RETURNING).
307
    '''
308 3633 aaronmk
    return put_table(db, table, [], row, row_ct_ref)
309 3077 aaronmk
310
def get(db, table, row, pkey, row_ct_ref=None, create=False):
311
    '''Recovers from errors'''
312
    try:
313
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
314
            recover=True))
315
    except StopIteration:
316
        if not create: raise
317
        return put(db, table, row, pkey, row_ct_ref) # insert new row
318
319
def is_func_result(col):
320
    return col.table.name.find('(') >= 0 and col.name == 'result'
321
322
def into_table_name(out_table, in_tables0, mapping, is_func):
323
    def in_col_str(in_col):
324
        in_col = sql_gen.remove_col_rename(in_col)
325
        if isinstance(in_col, sql_gen.Col):
326
            table = in_col.table
327
            if table == in_tables0:
328
                in_col = sql_gen.to_name_only_col(in_col)
329
            elif is_func_result(in_col): in_col = table # omit col name
330 3750 aaronmk
        return strings.ustr(in_col)
331 3077 aaronmk
332 4491 aaronmk
    str_ = strings.ustr(out_table)
333 3077 aaronmk
    if is_func:
334
        str_ += '('
335
336
        try: value_in_col = mapping['value']
337
        except KeyError:
338 4491 aaronmk
            str_ += ', '.join((strings.ustr(k)+'='+in_col_str(v)
339 3077 aaronmk
                for k, v in mapping.iteritems()))
340
        else: str_ += in_col_str(value_in_col)
341
342
        str_ += ')'
343
    else:
344
        out_col = 'rank'
345
        try: in_col = mapping[out_col]
346
        except KeyError: str_ += '_pkeys'
347
        else: # has a rank column, so hierarchical
348 4491 aaronmk
            str_ += '['+strings.ustr(out_col)+'='+in_col_str(in_col)+']'
349 3077 aaronmk
    return str_
350
351 3628 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, default=None,
352 3660 aaronmk
    col_defaults={}, on_error=exc.reraise):
353 3077 aaronmk
    '''Recovers from errors.
354
    Only works under PostgreSQL (uses INSERT RETURNING).
355
    IMPORTANT: Must be run at the *beginning* of a transaction.
356
    @param in_tables The main input table to select from, followed by a list of
357
        tables to join with it using the main input table's pkey
358
    @param mapping dict(out_table_col=in_table_col, ...)
359
        * out_table_col: str (*not* sql_gen.Col)
360
        * in_table_col: sql_gen.Col|literal-value
361
    @param default The *output* column to use as the pkey for missing rows.
362
        If this output column does not exist in the mapping, uses None.
363 3618 aaronmk
    @param col_defaults Default values for required columns.
364 3077 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
365
    '''
366 3474 aaronmk
    import psycopg2.extensions
367
368 3077 aaronmk
    out_table = sql_gen.as_Table(out_table)
369
370
    def log_debug(msg): db.log_debug(msg, level=1.5)
371
    def col_ustr(str_):
372
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
373
374
    log_debug('********** New iteration **********')
375
    log_debug('Inserting these input columns into '+strings.as_tt(
376
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
377
378
    is_function = sql.function_exists(db, out_table)
379
380 5192 aaronmk
    if is_function: row_ct_ref = None # only track inserted rows
381
382 4984 aaronmk
    # Warn if inserting empty table rows
383
    if not mapping and not is_function: # functions with no args OK
384
        warnings.warn(UserWarning('Inserting empty table row(s)'))
385
386 3077 aaronmk
    if is_function: out_pkey = 'result'
387 5388 aaronmk
    else: out_pkey = sql.pkey_name(db, out_table, recover=True)
388 3077 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
389
390 5069 aaronmk
    in_tables_ = copy.copy(in_tables) # don't modify input!
391 3432 aaronmk
    try: in_tables0 = in_tables_.pop(0) # first table is separate
392
    except IndexError: in_tables0 = None
393
    else:
394 5388 aaronmk
        in_pkey = sql.pkey_name(db, in_tables0, recover=True)
395 3432 aaronmk
        in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
396 3431 aaronmk
397
    # Determine if can use optimization for only literal values
398
    is_literals = not reduce(operator.or_, map(sql_gen.is_table_col,
399 3434 aaronmk
        mapping.values()), False)
400 3431 aaronmk
    is_literals_or_function = is_literals or is_function
401
402 3432 aaronmk
    if in_tables0 == None: errors_table_ = None
403
    else: errors_table_ = errors_table(db, in_tables0)
404 3431 aaronmk
405
    # Create input joins from list of input tables
406 3077 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
407
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
408
409 5381 aaronmk
    orig_mapping = mapping.copy()
410 3433 aaronmk
    if mapping == {} and not is_function: # need >= one column for INSERT SELECT
411
        mapping = {out_pkey: None} # ColDict will replace with default value
412
413 3431 aaronmk
    if not is_literals:
414 3628 aaronmk
        into = sql_gen.as_Table(into_table_name(out_table, in_tables0, mapping,
415
            is_function))
416 5553 aaronmk
        # Ensure into's out_pkey is different from in_pkey by prepending "out."
417 4495 aaronmk
        if is_function: into_out_pkey = out_pkey
418 5553 aaronmk
        else: into_out_pkey = 'out.'+out_pkey
419 3431 aaronmk
420
        # Set column sources
421
        in_cols = filter(sql_gen.is_table_col, mapping.values())
422
        for col in in_cols:
423
            if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
424
425
        log_debug('Joining together input tables into temp table')
426
        # Place in new table so don't modify input and for speed
427
        in_table = sql_gen.Table('in')
428
        mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
429
            in_cols, preserve=[in_pkey_col]))
430
        input_joins = [in_table]
431
        db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
432 3077 aaronmk
433 3692 aaronmk
    # Wrap mapping in a sql_gen.ColDict.
434
    # sql_gen.ColDict sanitizes both keys and values passed into it.
435
    # Do after applying dicts.join() because that returns a plain dict.
436 3077 aaronmk
    mapping = sql_gen.ColDict(db, out_table, mapping)
437
438 5239 aaronmk
    # Save all rows since in_table may have rows deleted
439 3431 aaronmk
    if is_literals: pass
440
    elif is_function: full_in_table = in_table
441 3386 aaronmk
    else:
442
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
443 5530 aaronmk
        sql.copy_table(db, in_table, full_in_table)
444 3287 aaronmk
445 3077 aaronmk
    pkeys_table_exists_ref = [False]
446 5444 aaronmk
    def insert_into_pkeys(query, **kw_args):
447 3077 aaronmk
        if pkeys_table_exists_ref[0]:
448 4484 aaronmk
            sql.insert_select(db, into, [in_pkey, into_out_pkey], query,
449
                **kw_args)
450 3077 aaronmk
        else:
451 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
452 3077 aaronmk
            pkeys_table_exists_ref[0] = True
453
454 5523 aaronmk
    def mk_main_select(joins, cols): return sql.mk_select(db, joins, cols)
455 3418 aaronmk
456 3431 aaronmk
    if is_literals: insert_in_table = None
457
    else:
458
        insert_in_table = in_table
459
        insert_in_tables = [insert_in_table]
460 3352 aaronmk
    join_cols = sql_gen.ColDict(db, out_table)
461 3077 aaronmk
462
    exc_strs = set()
463
    def log_exc(e):
464
        e_str = exc.str_(e, first_line_only=True)
465
        log_debug('Caught exception: '+e_str)
466 3552 aaronmk
        if e_str in exc_strs: # avoid infinite loops
467
            log_debug('Exception already seen, handler broken')
468
            on_error(e)
469
            remove_all_rows()
470
        else: exc_strs.add(e_str)
471 3077 aaronmk
472 5377 aaronmk
    ignore_all_ref = [False]
473 3077 aaronmk
    def remove_all_rows():
474
        log_debug('Ignoring all rows')
475 5377 aaronmk
        ignore_all_ref[0] = True # just return the default value column
476 3077 aaronmk
477 5504 aaronmk
    def ensure_cond(cond, e, passed=False, failed=False):
478 5449 aaronmk
        if is_literals: # we know the constraint was applied exactly once
479
            if passed: pass
480
            elif failed: remove_all_rows()
481
            else: raise NotImplementedError()
482 3704 aaronmk
        else:
483
            out_table_cols = sql_gen.ColDict(db, out_table)
484
            out_table_cols.update(util.dict_subset_right_join({},
485 5337 aaronmk
                sql.table_col_names(db, out_table)))
486 3704 aaronmk
487
            in_cols = []
488 5367 aaronmk
            cond = sql_gen.map_expr(db, cond, mapping, in_cols)
489
            cond = sql_gen.map_expr(db, cond, out_table_cols)
490 3704 aaronmk
491
            not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
492 5442 aaronmk
            log_debug('Ignoring rows that do not satisfy '+strings.as_tt(cond))
493 5449 aaronmk
            cur = None
494
            if cond == sql_gen.false_expr:
495
                assert failed
496
                remove_all_rows()
497
            elif cond == sql_gen.true_expr: assert passed
498
            else: cur = sql.delete(db, insert_in_table, not_cond)
499
500
            if failed or cur.rowcount > 0: # only if any rows failed cond
501 5505 aaronmk
                track_data_error(db, errors_table_,
502
                    sql_gen.cross_join_srcs(in_cols), None, e.cause.pgcode,
503 5449 aaronmk
                    strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
504 3352 aaronmk
505 3294 aaronmk
    not_null_cols = set()
506 3077 aaronmk
    def ignore(in_col, value, e):
507 3630 aaronmk
        if sql_gen.is_table_col(in_col):
508
            in_col = sql_gen.with_table(in_col, insert_in_table)
509
510
            track_data_error(db, errors_table_, in_col.srcs, value,
511
                e.cause.pgcode, e.cause.pgerror)
512
513
            sql.add_index(db, in_col, insert_in_table) # enable fast filtering
514
            if value != None and in_col not in not_null_cols:
515 4492 aaronmk
                log_debug('Replacing invalid value '
516
                    +strings.as_tt(strings.urepr(value))+' with NULL in column '
517
                    +strings.as_tt(in_col.to_str(db)))
518 3630 aaronmk
                sql.update(db, insert_in_table, [(in_col, None)],
519
                    sql_gen.ColValueCond(in_col, value))
520
            else:
521 3637 aaronmk
                log_debug('Ignoring rows with '+strings.as_tt(in_col.to_str(db))
522 4492 aaronmk
                    +' = '+strings.as_tt(strings.urepr(value)))
523 3630 aaronmk
                sql.delete(db, insert_in_table,
524
                    sql_gen.ColValueCond(in_col, value))
525
                if value == None: not_null_cols.add(in_col)
526 3293 aaronmk
        else:
527 3630 aaronmk
            assert isinstance(in_col, sql_gen.NamedCol)
528 3684 aaronmk
            in_value = sql_gen.remove_col_rename(in_col)
529
            assert sql_gen.is_literal(in_value)
530
            if value == in_value.value:
531
                if value != None:
532
                    log_debug('Replacing invalid literal '
533
                        +strings.as_tt(in_col.to_str(db))+' with NULL')
534
                    mapping[in_col.name] = None
535
                else:
536
                    remove_all_rows()
537
            # otherwise, all columns were being ignore()d because the specific
538
            # column couldn't be identified, and this was not the invalid column
539 3077 aaronmk
540 3431 aaronmk
    if not is_literals:
541
        def insert_pkeys_table(which):
542
            return sql_gen.Table(sql_gen.concat(in_table.name,
543
                '_insert_'+which+'_pkeys'))
544
        insert_out_pkeys = insert_pkeys_table('out')
545
        insert_in_pkeys = insert_pkeys_table('in')
546 3077 aaronmk
547 3918 aaronmk
    def mk_func_call():
548 3550 aaronmk
        args = dict(((k.name, v) for k, v in mapping.iteritems()))
549 4484 aaronmk
        return sql_gen.FunctionCall(out_table, **args), args
550 3550 aaronmk
551 3918 aaronmk
    if is_function and not is_literals:
552
        log_debug('Defining wrapper function')
553
554
        func_call, args = mk_func_call()
555 4484 aaronmk
        func_call = sql_gen.NamedCol(into_out_pkey, func_call)
556 3918 aaronmk
557
        # Create empty pkeys table so its row type can be used
558 5444 aaronmk
        insert_into_pkeys(sql.mk_select(db, input_joins,
559 5528 aaronmk
            [in_pkey_col, func_call], limit=0), recover=True)
560 4484 aaronmk
        result_type = db.col_info(sql_gen.Col(into_out_pkey, into)).type
561 3918 aaronmk
562
        ## Create error handling wrapper function
563
564
        wrapper = db.TempFunction(sql_gen.concat(into.name, '_wrap'))
565
566
        select_cols = [in_pkey_col]+args.values()
567
        row_var = copy.copy(sql_gen.row_var)
568
        row_var.set_srcs([in_table])
569
        in_pkey_var = sql_gen.Col(in_pkey, row_var)
570
571
        args = dict(((k, sql_gen.with_table(v, row_var))
572
            for k, v in args.iteritems()))
573
        func_call = sql_gen.FunctionCall(out_table, **args)
574
575
        def mk_return(result):
576
            return sql_gen.ReturnQuery(sql.mk_select(db,
577
                fields=[in_pkey_var, result], explain=False))
578
        exc_handler = func_wrapper_exception_handler(db,
579
            mk_return(sql_gen.Cast(result_type, None)), args.values(),
580
            errors_table_)
581
582
        sql.define_func(db, sql_gen.FunctionDef(wrapper, sql_gen.SetOf(into),
583
            sql_gen.RowExcIgnore(sql_gen.RowType(in_table),
584 5523 aaronmk
                sql.mk_select(db, input_joins), mk_return(func_call),
585
                exc_handler=exc_handler)
586 3918 aaronmk
            ))
587
        wrapper_table = sql_gen.FunctionCall(wrapper)
588 3550 aaronmk
589 5239 aaronmk
    missing_msg = None
590
591 3077 aaronmk
    # Do inserts and selects
592
    while True:
593 3473 aaronmk
        has_joins = join_cols != {}
594
595 5377 aaronmk
        if ignore_all_ref[0]: break # unrecoverable error, so don't do main case
596 3077 aaronmk
597
        # Prepare to insert new rows
598 3918 aaronmk
        if is_function:
599
            log_debug('Calling function on input rows')
600
            if is_literals: func_call, args = mk_func_call()
601 3077 aaronmk
        else:
602 3550 aaronmk
            log_debug('Trying to insert new rows')
603 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
604
            if has_joins:
605
                insert_args.update(dict(ignore=True))
606
            else:
607 3431 aaronmk
                insert_args.update(dict(returning=out_pkey))
608
                if not is_literals:
609
                    insert_args.update(dict(into=insert_out_pkeys))
610 3291 aaronmk
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
611
                c, insert_in_table) for c in mapping.values()])
612 3077 aaronmk
613 3292 aaronmk
        try:
614
            cur = None
615 3077 aaronmk
            if is_function:
616 3917 aaronmk
                if is_literals:
617
                    cur = sql.select(db, fields=[func_call], recover=True,
618
                        cacheable=True)
619 5444 aaronmk
                else:
620
                    insert_into_pkeys(sql.mk_select(db, wrapper_table,
621
                        order_by=None), recover=True)
622 3077 aaronmk
            else:
623 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
624 3077 aaronmk
                    main_select, **insert_args)
625
            break # insert successful
626
        except sql.MissingCastException, e:
627
            log_exc(e)
628
629
            type_ = e.type
630 4140 aaronmk
            if e.col == None: out_cols = mapping.keys()
631
            else: out_cols = [e.col]
632 3077 aaronmk
633 4140 aaronmk
            for out_col in out_cols:
634 4171 aaronmk
                log_debug('Casting '+strings.as_tt(strings.repr_no_u(out_col))
635 4140 aaronmk
                    +' input to '+strings.as_tt(type_))
636
                in_col = mapping[out_col]
637
                while True:
638
                    try:
639
                        mapping[out_col] = cast_temp_col(db, type_, in_col,
640
                            errors_table_)
641
                        break # cast successful
642
                    except sql.InvalidValueException, e:
643
                        log_exc(e)
644
645
                        ignore(in_col, e.value, e)
646 3077 aaronmk
        except sql.DuplicateKeyException, e:
647
            log_exc(e)
648
649 3274 aaronmk
            # Different rows violating different unique constraints not
650
            # supported
651
            assert not join_cols
652
653 5504 aaronmk
            if e.cond != None: ensure_cond(e.cond, e, passed=True)
654 5450 aaronmk
655 3077 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
656
            log_debug('Ignoring existing rows, comparing on these columns:\n'
657
                +strings.as_inline_table(join_cols, ustr=col_ustr))
658 3102 aaronmk
659 3431 aaronmk
            if is_literals:
660
                return sql.value(sql.select(db, out_table, [out_pkey_col],
661 4025 aaronmk
                    join_cols, order_by=None))
662 3431 aaronmk
663 3102 aaronmk
            # Uniquify input table to avoid internal duplicate keys
664
            insert_in_table = sql.distinct_table(db, insert_in_table,
665 3358 aaronmk
                join_cols.values())
666 3144 aaronmk
            insert_in_tables.append(insert_in_table)
667 3077 aaronmk
        except sql.NullValueException, e:
668
            log_exc(e)
669
670
            out_col, = e.cols
671
            try: in_col = mapping[out_col]
672 3618 aaronmk
            except KeyError, e:
673
                try: in_col = mapping[out_col] = col_defaults[out_col]
674
                except KeyError:
675 5239 aaronmk
                    missing_msg = 'Missing mapping for NOT NULL column '+out_col
676
                    log_debug(missing_msg)
677 3618 aaronmk
                    remove_all_rows()
678 3294 aaronmk
            else: ignore(in_col, None, e)
679 3352 aaronmk
        except sql.CheckException, e:
680
            log_exc(e)
681
682 5504 aaronmk
            ensure_cond(e.cond, e, failed=True)
683 3413 aaronmk
        except sql.InvalidValueException, e:
684
            log_exc(e)
685
686
            for in_col in mapping.values(): ignore(in_col, e.value, e)
687 3474 aaronmk
        except psycopg2.extensions.TransactionRollbackError, e:
688
            log_exc(e)
689
            # retry
690 3077 aaronmk
        except sql.DatabaseErrors, e:
691
            log_exc(e)
692
693
            log_debug('No handler for exception')
694
            on_error(e)
695
            remove_all_rows()
696
        # after exception handled, rerun loop with additional constraints
697
698 5239 aaronmk
    # Resolve default value column
699
    if default != None:
700 5381 aaronmk
        if ignore_all_ref[0]: mapping.update(orig_mapping) # use input cols
701 5239 aaronmk
        try: default = mapping[default]
702
        except KeyError:
703
            db.log_debug('Default value column '
704
                +strings.as_tt(strings.repr_no_u(default))
705
                +' does not exist in mapping, falling back to None', level=2.1)
706
            default = None
707 5380 aaronmk
        else: default = sql_gen.remove_col_rename(default)
708 5239 aaronmk
709
    if missing_msg != None and default == None:
710
        warnings.warn(UserWarning(missing_msg))
711
        # not an error because sometimes the mappings include
712
        # extra tables which aren't used by the dataset
713
714
    # Handle unrecoverable errors
715 5377 aaronmk
    if ignore_all_ref[0]:
716 5373 aaronmk
        log_debug('Returning default: '+strings.as_tt(strings.urepr(default)))
717
        return default
718 5239 aaronmk
719 3077 aaronmk
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
720
        row_ct_ref[0] += cur.rowcount
721
722 3530 aaronmk
    if is_literals: return sql.value(cur)
723
724
    if is_function: pass # pkeys table already created
725 3077 aaronmk
    elif has_joins:
726
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
727
        log_debug('Getting output table pkeys of existing/inserted rows')
728 5444 aaronmk
        insert_into_pkeys(sql.mk_select(db, select_joins, [in_pkey_col,
729
            sql_gen.NamedCol(into_out_pkey, out_pkey_col)], order_by=None))
730 3077 aaronmk
    else:
731
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
732
733
        log_debug('Getting input table pkeys of inserted rows')
734 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
735
        # since the SELECT query is identical to the one used in INSERT SELECT,
736
        # its rows will be retrieved in the same order.
737 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
738
            into=insert_in_pkeys)
739
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
740
741
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
742
            db, insert_in_pkeys)
743
744
        log_debug('Combining output and input pkeys in inserted order')
745
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
746
            {sql.row_num_col: sql_gen.join_same_not_null})]
747 4484 aaronmk
        in_col = sql_gen.Col(in_pkey, insert_in_pkeys)
748
        out_col = sql_gen.NamedCol(into_out_pkey,
749
            sql_gen.Col(out_pkey, insert_out_pkeys))
750 5444 aaronmk
        insert_into_pkeys(sql.mk_select(db, pkey_joins, [in_col, out_col],
751
            order_by=None))
752 3077 aaronmk
753
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
754
755 5374 aaronmk
    if not is_function: # is_function doesn't leave holes
756 3187 aaronmk
        log_debug('Setting pkeys of missing rows to '
757 4492 aaronmk
            +strings.as_tt(strings.urepr(default)))
758 5380 aaronmk
        if sql_gen.is_table_col(default):
759
            default = sql_gen.with_table(default, full_in_table)
760 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
761 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
762
            # must use join_same_not_null or query will take forever
763 5444 aaronmk
        insert_into_pkeys(sql.mk_select(db, missing_rows_joins,
764 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
765 5444 aaronmk
            sql_gen.NamedCol(into_out_pkey, default)], order_by=None))
766 3187 aaronmk
    # otherwise, there is already an entry for every row
767 3077 aaronmk
768 3530 aaronmk
    assert (sql.table_row_count(db, into)
769
        == sql.table_row_count(db, full_in_table))
770
771
    sql.empty_temp(db, insert_in_tables+[full_in_table])
772
773
    srcs = []
774 3619 aaronmk
    if is_function: srcs = sql_gen.cols_srcs(in_cols)
775 4484 aaronmk
    return sql_gen.Col(into_out_pkey, into, srcs)