Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3 3534 aaronmk
import copy
4 4995 aaronmk
import csv
5 3431 aaronmk
import operator
6 3714 aaronmk
import warnings
7 3431 aaronmk
8 4995 aaronmk
import csvs
9 3077 aaronmk
import exc
10
import dicts
11
import sql
12
import sql_gen
13
import strings
14
import util
15
16 3645 aaronmk
##### Exceptions
17
18
# Can't use built-in SyntaxError because it stringifies to only the first line
19
class SyntaxError(Exception): pass
20
21 3081 aaronmk
##### Data cleanup
22
23 4915 aaronmk
null_strs = ['', '-', r'\N', 'NULL', 'UNKNOWN', 'nulo']
24 4209 aaronmk
25 4447 aaronmk
def cleanup_table(db, table):
26 3081 aaronmk
    table = sql_gen.as_Table(table)
27 4914 aaronmk
    cols = [sql_gen.as_Col(strings.ustr(c), table)
28
        for c in sql.table_cols(db, table)]
29 4407 aaronmk
    cols = filter(lambda c: sql_gen.is_text_col(db, c), cols)
30 4928 aaronmk
    if not cols: return
31 3081 aaronmk
32 4993 aaronmk
    db.log_debug('Cleaning up table', level=1.5)
33
34 4209 aaronmk
    expr = 'trim(both from %s)'
35
    for null in null_strs: expr = 'nullif('+expr+', '+db.esc_value(null)+')'
36
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db))) for v in cols]
37 3081 aaronmk
38 4444 aaronmk
    while True:
39
        try:
40
            sql.update(db, table, changes, in_place=True, recover=True)
41
            break # successful
42
        except sql.NullValueException, e:
43 4457 aaronmk
            db.log_debug('Caught exception: '+exc.str_(e))
44 4444 aaronmk
            col, = e.cols
45
            sql.drop_not_null(db, col)
46 4992 aaronmk
47
    db.log_debug('Vacuuming and reanalyzing table', level=1.5)
48
    sql.vacuum(db, table)
49 3081 aaronmk
50 3078 aaronmk
##### Error tracking
51
52
def track_data_error(db, errors_table, cols, value, error_code, error):
53
    '''
54
    @param errors_table If None, does nothing.
55
    '''
56
    if errors_table == None or cols == (): return
57
58
    for col in cols:
59
        try:
60
            sql.insert(db, errors_table, dict(column=col.name, value=value,
61
                error_code=error_code, error=error), recover=True,
62
                cacheable=True, log_level=4)
63
        except sql.DuplicateKeyException: pass
64
65 3506 aaronmk
class ExcToErrorsTable(sql_gen.ExcToWarning):
66
    '''Handles an exception by saving it or converting it to a warning.'''
67 3511 aaronmk
    def __init__(self, return_, srcs, errors_table, value=None):
68 3506 aaronmk
        '''
69
        @param return_ See sql_gen.ExcToWarning
70
        @param srcs The column names for the errors table
71
        @param errors_table None|sql_gen.Table
72 3511 aaronmk
        @param value The value (or an expression for it) that caused the error
73 3506 aaronmk
        @pre The invalid value must be in a local variable "value" of type text.
74
        '''
75
        sql_gen.ExcToWarning.__init__(self, return_)
76
77 3511 aaronmk
        value = sql_gen.as_Code(value)
78
79 3506 aaronmk
        self.srcs = srcs
80
        self.errors_table = errors_table
81 3511 aaronmk
        self.value = value
82 3501 aaronmk
83 3506 aaronmk
    def to_str(self, db):
84
        if not self.srcs or self.errors_table == None:
85
            return sql_gen.ExcToWarning.to_str(self, db)
86
87 3459 aaronmk
        errors_table_cols = map(sql_gen.Col,
88
            ['column', 'value', 'error_code', 'error'])
89 3465 aaronmk
        col_names_query = sql.mk_select(db, sql_gen.NamedValues('c', None,
90 3506 aaronmk
            [[c.name] for c in self.srcs]), order_by=None)
91
        insert_query = sql.mk_insert_select(db, self.errors_table,
92
            errors_table_cols,
93 3465 aaronmk
            sql_gen.Values(errors_table_cols).to_str(db))+';\n'
94 3506 aaronmk
        return '''\
95 3459 aaronmk
-- Save error in errors table.
96
DECLARE
97
    error_code text := SQLSTATE;
98
    error text := SQLERRM;
99 3511 aaronmk
    value text := '''+self.value.to_str(db)+''';
100 3529 aaronmk
    "column" text;
101 3459 aaronmk
BEGIN
102
    -- Insert the value and error for *each* source column.
103 3529 aaronmk
'''+strings.indent(sql_gen.RowExcIgnore(None, col_names_query, insert_query,
104 3467 aaronmk
    row_var=errors_table_cols[0]).to_str(db))+'''
105 3459 aaronmk
END;
106 3501 aaronmk
107 3506 aaronmk
'''+self.return_.to_str(db)
108 3459 aaronmk
109 3507 aaronmk
def data_exception_handler(*args, **kw_args):
110 3506 aaronmk
    '''Handles a data_exception by saving it or converting it to a warning.
111
    For params, see ExcToErrorsTable().
112
    '''
113
    return sql_gen.data_exception_handler(ExcToErrorsTable(*args, **kw_args))
114
115 3078 aaronmk
def cast(db, type_, col, errors_table=None):
116
    '''Casts an (unrenamed) column or value.
117
    If errors_table set and col has srcs, saves errors in errors_table (using
118 3360 aaronmk
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
119 3078 aaronmk
    @param col str|sql_gen.Col|sql_gen.Literal
120
    @param errors_table None|sql_gen.Table|str
121
    '''
122
    col = sql_gen.as_Col(col)
123
124 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
125
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
126
127 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
128
129 3460 aaronmk
    function_name = strings.first_word(type_)
130 3459 aaronmk
    srcs = col.srcs
131 3508 aaronmk
    save_errors = errors_table != None and srcs
132
    if save_errors: # function will be unique for the given srcs
133 3750 aaronmk
        function_name = strings.ustr(sql_gen.FunctionCall(function_name,
134 3508 aaronmk
            *map(sql_gen.to_name_only_col, srcs)))
135 3078 aaronmk
    function = db.TempFunction(function_name)
136
137 3464 aaronmk
    # Create function definition
138
    modifiers = 'STRICT'
139
    if not save_errors: modifiers = 'IMMUTABLE '+modifiers
140 3511 aaronmk
    value_param = sql_gen.FunctionParam('value', 'text')
141
    handler = data_exception_handler('RETURN NULL;\n', srcs, errors_table,
142
        value_param.name)
143 3464 aaronmk
    body = sql_gen.CustomCode(handler.to_str(db, '''\
144 3467 aaronmk
/* The explicit cast to the return type is needed to make the cast happen
145
inside the try block. (Implicit casts to the return type happen at the end
146
of the function, outside any block.) */
147
RETURN value::'''+type_+''';
148 3464 aaronmk
'''))
149
    body.lang='plpgsql'
150 3500 aaronmk
    sql.define_func(db, sql_gen.FunctionDef(function, type_, body,
151 3511 aaronmk
        [value_param], modifiers))
152 3464 aaronmk
153 3078 aaronmk
    return sql_gen.FunctionCall(function, col)
154
155 3538 aaronmk
def func_wrapper_exception_handler(db, return_, args, errors_table):
156 3524 aaronmk
    '''Handles a function call's data_exceptions.
157
    Supports PL/Python functions.
158
    @param return_ See data_exception_handler()
159
    @param args [arg...] Function call's args
160
    @param errors_table See data_exception_handler()
161
    '''
162
    args = filter(sql_gen.has_srcs, args)
163
164
    srcs = sql_gen.cross_join_srcs(args)
165 3538 aaronmk
    value = sql_gen.merge_not_null(db, ',', args)
166 3524 aaronmk
    return sql_gen.NestedExcHandler(
167
        data_exception_handler(return_, srcs, errors_table, value)
168
        , sql_gen.plpythonu_error_handler
169
        )
170
171 3078 aaronmk
def cast_temp_col(db, type_, col, errors_table=None):
172
    '''Like cast(), but creates a new column with the cast values if the input
173
    is a column.
174
    @return The new column or cast value
175
    '''
176
    def cast_(col): return cast(db, type_, col, errors_table)
177
178
    try: col = sql_gen.underlying_col(col)
179
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
180
181
    table = col.table
182 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
183 3078 aaronmk
    expr = cast_(col)
184
185
    # Add column
186
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
187 3750 aaronmk
    sql.add_col(db, table, new_typed_col, comment=strings.urepr(col)+'::'+type_)
188 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
189
190 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
191 3078 aaronmk
192
    return new_col
193
194
def errors_table(db, table, if_exists=True):
195
    '''
196
    @param if_exists If set, returns None if the errors table doesn't exist
197
    @return None|sql_gen.Table
198
    '''
199
    table = sql_gen.as_Table(table)
200
    if table.srcs != (): table = table.srcs[0]
201
202
    errors_table = sql_gen.suffixed_table(table, '.errors')
203
    if if_exists and not sql.table_exists(db, errors_table): return None
204
    return errors_table
205
206 4436 aaronmk
def mk_errors_table(db, table):
207
    errors_table_ = errors_table(db, table, if_exists=False)
208 4557 aaronmk
    if sql.table_exists(db, errors_table_, cacheable=False): return
209 4436 aaronmk
210
    typed_cols = [
211
        sql_gen.TypedCol('column', 'text', nullable=False),
212
        sql_gen.TypedCol('value', 'text'),
213
        sql_gen.TypedCol('error_code', 'character varying(5)', nullable=False),
214
        sql_gen.TypedCol('error', 'text', nullable=False),
215
        ]
216
    sql.create_table(db, errors_table_, typed_cols, has_pkey=False)
217
    index_cols = ['column', 'value', 'error_code', 'error']
218
    sql.add_index(db, index_cols, errors_table_, unique=True)
219
220 3078 aaronmk
##### Import
221
222 5017 aaronmk
def append_csv(db, table, stream_info, stream, use_copy_from=True):
223 5037 aaronmk
    assert sql.table_cols(db, table) == stream_info.header
224
225 5017 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
226
227
    dialect = stream_info.dialect
228
    if csvs.is_tsv(dialect): use_copy_from = False
229
    if use_copy_from:
230
        log('Using COPY FROM')
231
232
        # Create COPY FROM statement
233
        copy_from = ('COPY '+table.to_str(db)+' FROM STDIN DELIMITER '
234
            +db.esc_value(dialect.delimiter)+' NULL '+db.esc_value(''))
235
        assert not csvs.is_tsv(dialect)
236
        copy_from += ' CSV'
237
        if dialect.quoting != csv.QUOTE_NONE:
238
            quote_str = db.esc_value(dialect.quotechar)
239
            copy_from += ' QUOTE '+quote_str
240
            if dialect.doublequote: copy_from += ' ESCAPE '+quote_str
241
        copy_from += ';\n'
242
243
        log(copy_from, level=2)
244
        db.db.cursor().copy_expert(copy_from, stream)
245
    else:
246
        log('Using INSERT')
247
        cols_ct = len(stream_info.header)
248
        for row in csvs.make_reader(stream, dialect):
249
            row = map(strings.to_unicode, row)
250
            util.list_set_length(row, cols_ct) # truncate extra cols
251
            sql.insert(db, table, row, cacheable=False, log_level=5)
252
253 5027 aaronmk
def import_csv(db, table, stream, use_copy_from=True):
254 4995 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
255
256
    # Get format info
257
    info = csvs.stream_info(stream, parse_header=True)
258
    col_names = map(strings.to_unicode, info.header)
259
    for i, col in enumerate(col_names): # replace empty column names
260
        if col == '': col_names[i] = 'column_'+str(i)
261
262
    # Select schema and escape names
263
    def esc_name(name): return db.esc_name(name)
264
265
    typed_cols = [sql_gen.TypedCol(v, 'text') for v in col_names]
266
267
    log('Creating table')
268 4999 aaronmk
    # Note that this is not rolled back if the import fails. Instead, it is
269
    # cached, and will not be re-run if the import is retried.
270 4995 aaronmk
    sql.create_table(db, table, typed_cols, has_pkey=False, col_indexes=False)
271
272 5001 aaronmk
    # Free memory used by deleted (rolled back) rows from any failed import.
273
    # This MUST be run so that the rows will be stored in inserted order, and
274
    # the row_num added after import will match up with the CSV's row order.
275 4999 aaronmk
    sql.truncate(db, table)
276
277 4995 aaronmk
    # Load the data
278 5025 aaronmk
    def load(): append_csv(db, table, info, stream, use_copy_from)
279
    if use_copy_from: sql.with_savepoint(db, load)
280
    else: load()
281 4995 aaronmk
282
    cleanup_table(db, table)
283
284 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
285
    '''Recovers from errors.
286
    Only works under PostgreSQL (uses INSERT RETURNING).
287
    '''
288 3633 aaronmk
    return put_table(db, table, [], row, row_ct_ref)
289 3077 aaronmk
290
def get(db, table, row, pkey, row_ct_ref=None, create=False):
291
    '''Recovers from errors'''
292
    try:
293
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
294
            recover=True))
295
    except StopIteration:
296
        if not create: raise
297
        return put(db, table, row, pkey, row_ct_ref) # insert new row
298
299
def is_func_result(col):
300
    return col.table.name.find('(') >= 0 and col.name == 'result'
301
302
def into_table_name(out_table, in_tables0, mapping, is_func):
303
    def in_col_str(in_col):
304
        in_col = sql_gen.remove_col_rename(in_col)
305
        if isinstance(in_col, sql_gen.Col):
306
            table = in_col.table
307
            if table == in_tables0:
308
                in_col = sql_gen.to_name_only_col(in_col)
309
            elif is_func_result(in_col): in_col = table # omit col name
310 3750 aaronmk
        return strings.ustr(in_col)
311 3077 aaronmk
312 4491 aaronmk
    str_ = strings.ustr(out_table)
313 3077 aaronmk
    if is_func:
314
        str_ += '('
315
316
        try: value_in_col = mapping['value']
317
        except KeyError:
318 4491 aaronmk
            str_ += ', '.join((strings.ustr(k)+'='+in_col_str(v)
319 3077 aaronmk
                for k, v in mapping.iteritems()))
320
        else: str_ += in_col_str(value_in_col)
321
322
        str_ += ')'
323
    else:
324
        out_col = 'rank'
325
        try: in_col = mapping[out_col]
326
        except KeyError: str_ += '_pkeys'
327
        else: # has a rank column, so hierarchical
328 4491 aaronmk
            str_ += '['+strings.ustr(out_col)+'='+in_col_str(in_col)+']'
329 3077 aaronmk
    return str_
330
331 3628 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, default=None,
332 3660 aaronmk
    col_defaults={}, on_error=exc.reraise):
333 3077 aaronmk
    '''Recovers from errors.
334
    Only works under PostgreSQL (uses INSERT RETURNING).
335
    IMPORTANT: Must be run at the *beginning* of a transaction.
336
    @param in_tables The main input table to select from, followed by a list of
337
        tables to join with it using the main input table's pkey
338
    @param mapping dict(out_table_col=in_table_col, ...)
339
        * out_table_col: str (*not* sql_gen.Col)
340
        * in_table_col: sql_gen.Col|literal-value
341
    @param default The *output* column to use as the pkey for missing rows.
342
        If this output column does not exist in the mapping, uses None.
343 3618 aaronmk
    @param col_defaults Default values for required columns.
344 3077 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
345
    '''
346 3474 aaronmk
    import psycopg2.extensions
347
348 3077 aaronmk
    out_table = sql_gen.as_Table(out_table)
349
350
    def log_debug(msg): db.log_debug(msg, level=1.5)
351
    def col_ustr(str_):
352
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
353
354
    log_debug('********** New iteration **********')
355
    log_debug('Inserting these input columns into '+strings.as_tt(
356
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
357
358
    is_function = sql.function_exists(db, out_table)
359
360 4984 aaronmk
    # Warn if inserting empty table rows
361
    if not mapping and not is_function: # functions with no args OK
362
        warnings.warn(UserWarning('Inserting empty table row(s)'))
363
364 3077 aaronmk
    if is_function: out_pkey = 'result'
365
    else: out_pkey = sql.pkey(db, out_table, recover=True)
366
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
367
368
    in_tables_ = in_tables[:] # don't modify input!
369 3432 aaronmk
    try: in_tables0 = in_tables_.pop(0) # first table is separate
370
    except IndexError: in_tables0 = None
371
    else:
372
        in_pkey = sql.pkey(db, in_tables0, recover=True)
373
        in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
374 3431 aaronmk
375
    # Determine if can use optimization for only literal values
376
    is_literals = not reduce(operator.or_, map(sql_gen.is_table_col,
377 3434 aaronmk
        mapping.values()), False)
378 3431 aaronmk
    is_literals_or_function = is_literals or is_function
379
380 3432 aaronmk
    if in_tables0 == None: errors_table_ = None
381
    else: errors_table_ = errors_table(db, in_tables0)
382 3431 aaronmk
383
    # Create input joins from list of input tables
384 3077 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
385
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
386
387 3433 aaronmk
    if mapping == {} and not is_function: # need >= one column for INSERT SELECT
388
        mapping = {out_pkey: None} # ColDict will replace with default value
389
390 3431 aaronmk
    if not is_literals:
391 3628 aaronmk
        into = sql_gen.as_Table(into_table_name(out_table, in_tables0, mapping,
392
            is_function))
393 4484 aaronmk
        # Ensure into's out_pkey is different from in_pkey by prepending table
394 4495 aaronmk
        if is_function: into_out_pkey = out_pkey
395
        else: into_out_pkey = strings.ustr(out_pkey_col)
396 3431 aaronmk
397
        # Set column sources
398
        in_cols = filter(sql_gen.is_table_col, mapping.values())
399
        for col in in_cols:
400
            if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
401
402
        log_debug('Joining together input tables into temp table')
403
        # Place in new table so don't modify input and for speed
404
        in_table = sql_gen.Table('in')
405
        mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
406
            in_cols, preserve=[in_pkey_col]))
407
        input_joins = [in_table]
408
        db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
409 3077 aaronmk
410 3692 aaronmk
    # Wrap mapping in a sql_gen.ColDict.
411
    # sql_gen.ColDict sanitizes both keys and values passed into it.
412
    # Do after applying dicts.join() because that returns a plain dict.
413 3077 aaronmk
    mapping = sql_gen.ColDict(db, out_table, mapping)
414
415
    # Resolve default value column
416
    if default != None:
417
        try: default = mapping[default]
418
        except KeyError:
419
            db.log_debug('Default value column '
420
                +strings.as_tt(strings.repr_no_u(default))
421
                +' does not exist in mapping, falling back to None', level=2.1)
422
            default = None
423
424 3287 aaronmk
    # Save default values for all rows since in_table may have rows deleted
425 3431 aaronmk
    if is_literals: pass
426
    elif is_function: full_in_table = in_table
427 3386 aaronmk
    else:
428
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
429
        full_in_table_cols = [in_pkey_col]
430
        if default != None:
431
            full_in_table_cols.append(default)
432
            default = sql_gen.with_table(default, full_in_table)
433
        sql.run_query_into(db, sql.mk_select(db, in_table, full_in_table_cols,
434
            order_by=None), into=full_in_table, add_pkey_=True)
435 3287 aaronmk
436 3077 aaronmk
    pkeys_table_exists_ref = [False]
437 3499 aaronmk
    def insert_into_pkeys(joins, cols=None, limit=None, **kw_args):
438 3477 aaronmk
        query = sql.mk_select(db, joins, cols, order_by=None, limit=limit)
439 3077 aaronmk
        if pkeys_table_exists_ref[0]:
440 4484 aaronmk
            sql.insert_select(db, into, [in_pkey, into_out_pkey], query,
441
                **kw_args)
442 3077 aaronmk
        else:
443 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
444 3077 aaronmk
            pkeys_table_exists_ref[0] = True
445
446
    limit_ref = [None]
447 3418 aaronmk
    def mk_main_select(joins, cols):
448
        return sql.mk_select(db, joins, cols, limit=limit_ref[0], order_by=None)
449
450 3431 aaronmk
    if is_literals: insert_in_table = None
451
    else:
452
        insert_in_table = in_table
453
        insert_in_tables = [insert_in_table]
454 3352 aaronmk
    join_cols = sql_gen.ColDict(db, out_table)
455 3077 aaronmk
456
    exc_strs = set()
457
    def log_exc(e):
458
        e_str = exc.str_(e, first_line_only=True)
459
        log_debug('Caught exception: '+e_str)
460 3552 aaronmk
        if e_str in exc_strs: # avoid infinite loops
461
            log_debug('Exception already seen, handler broken')
462
            on_error(e)
463
            remove_all_rows()
464
        else: exc_strs.add(e_str)
465 3077 aaronmk
466
    def remove_all_rows():
467
        log_debug('Ignoring all rows')
468
        limit_ref[0] = 0 # just create an empty pkeys table
469
470 3352 aaronmk
    def ignore_cond(cond, e):
471 3704 aaronmk
        if is_literals: remove_all_rows()
472
        else:
473
            out_table_cols = sql_gen.ColDict(db, out_table)
474
            out_table_cols.update(util.dict_subset_right_join({},
475
                sql.table_cols(db, out_table)))
476
477
            in_cols = []
478
            cond = sql.map_expr(db, cond, mapping, in_cols)
479
            cond = sql.map_expr(db, cond, out_table_cols)
480
481
            track_data_error(db, errors_table_, sql_gen.cols_srcs(in_cols),
482
                None, e.cause.pgcode,
483
                strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
484
485
            not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
486
            log_debug('Ignoring rows where '+strings.as_tt(not_cond.to_str(db)))
487
            sql.delete(db, insert_in_table, not_cond)
488 3352 aaronmk
489 3294 aaronmk
    not_null_cols = set()
490 3077 aaronmk
    def ignore(in_col, value, e):
491 3630 aaronmk
        if sql_gen.is_table_col(in_col):
492
            in_col = sql_gen.with_table(in_col, insert_in_table)
493
494
            track_data_error(db, errors_table_, in_col.srcs, value,
495
                e.cause.pgcode, e.cause.pgerror)
496
497
            sql.add_index(db, in_col, insert_in_table) # enable fast filtering
498
            if value != None and in_col not in not_null_cols:
499 4492 aaronmk
                log_debug('Replacing invalid value '
500
                    +strings.as_tt(strings.urepr(value))+' with NULL in column '
501
                    +strings.as_tt(in_col.to_str(db)))
502 3630 aaronmk
                sql.update(db, insert_in_table, [(in_col, None)],
503
                    sql_gen.ColValueCond(in_col, value))
504
            else:
505 3637 aaronmk
                log_debug('Ignoring rows with '+strings.as_tt(in_col.to_str(db))
506 4492 aaronmk
                    +' = '+strings.as_tt(strings.urepr(value)))
507 3630 aaronmk
                sql.delete(db, insert_in_table,
508
                    sql_gen.ColValueCond(in_col, value))
509
                if value == None: not_null_cols.add(in_col)
510 3293 aaronmk
        else:
511 3630 aaronmk
            assert isinstance(in_col, sql_gen.NamedCol)
512 3684 aaronmk
            in_value = sql_gen.remove_col_rename(in_col)
513
            assert sql_gen.is_literal(in_value)
514
            if value == in_value.value:
515
                if value != None:
516
                    log_debug('Replacing invalid literal '
517
                        +strings.as_tt(in_col.to_str(db))+' with NULL')
518
                    mapping[in_col.name] = None
519
                else:
520
                    remove_all_rows()
521
            # otherwise, all columns were being ignore()d because the specific
522
            # column couldn't be identified, and this was not the invalid column
523 3077 aaronmk
524 3431 aaronmk
    if not is_literals:
525
        def insert_pkeys_table(which):
526
            return sql_gen.Table(sql_gen.concat(in_table.name,
527
                '_insert_'+which+'_pkeys'))
528
        insert_out_pkeys = insert_pkeys_table('out')
529
        insert_in_pkeys = insert_pkeys_table('in')
530 3077 aaronmk
531 3918 aaronmk
    def mk_func_call():
532 3550 aaronmk
        args = dict(((k.name, v) for k, v in mapping.iteritems()))
533 4484 aaronmk
        return sql_gen.FunctionCall(out_table, **args), args
534 3550 aaronmk
535 3918 aaronmk
    if is_function and not is_literals:
536
        log_debug('Defining wrapper function')
537
538
        func_call, args = mk_func_call()
539 4484 aaronmk
        func_call = sql_gen.NamedCol(into_out_pkey, func_call)
540 3918 aaronmk
541
        # Create empty pkeys table so its row type can be used
542
        insert_into_pkeys(input_joins, [in_pkey_col, func_call], limit=0,
543
            recover=True)
544 4484 aaronmk
        result_type = db.col_info(sql_gen.Col(into_out_pkey, into)).type
545 3918 aaronmk
546
        ## Create error handling wrapper function
547
548
        wrapper = db.TempFunction(sql_gen.concat(into.name, '_wrap'))
549
550
        select_cols = [in_pkey_col]+args.values()
551
        row_var = copy.copy(sql_gen.row_var)
552
        row_var.set_srcs([in_table])
553
        in_pkey_var = sql_gen.Col(in_pkey, row_var)
554
555
        args = dict(((k, sql_gen.with_table(v, row_var))
556
            for k, v in args.iteritems()))
557
        func_call = sql_gen.FunctionCall(out_table, **args)
558
559
        def mk_return(result):
560
            return sql_gen.ReturnQuery(sql.mk_select(db,
561
                fields=[in_pkey_var, result], explain=False))
562
        exc_handler = func_wrapper_exception_handler(db,
563
            mk_return(sql_gen.Cast(result_type, None)), args.values(),
564
            errors_table_)
565
566
        sql.define_func(db, sql_gen.FunctionDef(wrapper, sql_gen.SetOf(into),
567
            sql_gen.RowExcIgnore(sql_gen.RowType(in_table),
568
                sql.mk_select(db, input_joins, order_by=None),
569
                mk_return(func_call), exc_handler=exc_handler)
570
            ))
571
        wrapper_table = sql_gen.FunctionCall(wrapper)
572 3550 aaronmk
573 3077 aaronmk
    # Do inserts and selects
574
    while True:
575 3473 aaronmk
        has_joins = join_cols != {}
576
577 3551 aaronmk
        # Handle unrecoverable errors in a special case
578
        if limit_ref[0] == 0:
579 4207 aaronmk
            if is_literals or default == None:
580 3686 aaronmk
                default = sql_gen.remove_col_rename(default)
581 4492 aaronmk
                log_debug('Returning default: '
582
                    +strings.as_tt(strings.urepr(default)))
583 3623 aaronmk
                return default
584 3551 aaronmk
            elif is_function: pass # empty pkeys table already created
585
            else:
586
                log_debug('Creating an empty output pkeys table')
587 3745 aaronmk
                has_joins = False # use the no-joins case
588 3551 aaronmk
                cur = sql.run_query_into(db, sql.mk_select(db, out_table,
589
                    [out_pkey], order_by=None, limit=0), into=insert_out_pkeys)
590
591 3077 aaronmk
            break # don't do main case
592
593
        # Prepare to insert new rows
594 3918 aaronmk
        if is_function:
595
            log_debug('Calling function on input rows')
596
            if is_literals: func_call, args = mk_func_call()
597 3077 aaronmk
        else:
598 3550 aaronmk
            log_debug('Trying to insert new rows')
599 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
600
            if has_joins:
601
                insert_args.update(dict(ignore=True))
602
            else:
603 3431 aaronmk
                insert_args.update(dict(returning=out_pkey))
604
                if not is_literals:
605
                    insert_args.update(dict(into=insert_out_pkeys))
606 3291 aaronmk
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
607
                c, insert_in_table) for c in mapping.values()])
608 3077 aaronmk
609 3292 aaronmk
        try:
610
            cur = None
611 3077 aaronmk
            if is_function:
612 3917 aaronmk
                if is_literals:
613
                    cur = sql.select(db, fields=[func_call], recover=True,
614
                        cacheable=True)
615 3499 aaronmk
                else: insert_into_pkeys(wrapper_table, recover=True)
616 3077 aaronmk
            else:
617 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
618 3077 aaronmk
                    main_select, **insert_args)
619
            break # insert successful
620
        except sql.MissingCastException, e:
621
            log_exc(e)
622
623
            type_ = e.type
624 4140 aaronmk
            if e.col == None: out_cols = mapping.keys()
625
            else: out_cols = [e.col]
626 3077 aaronmk
627 4140 aaronmk
            for out_col in out_cols:
628 4171 aaronmk
                log_debug('Casting '+strings.as_tt(strings.repr_no_u(out_col))
629 4140 aaronmk
                    +' input to '+strings.as_tt(type_))
630
                in_col = mapping[out_col]
631
                while True:
632
                    try:
633
                        mapping[out_col] = cast_temp_col(db, type_, in_col,
634
                            errors_table_)
635
                        break # cast successful
636
                    except sql.InvalidValueException, e:
637
                        log_exc(e)
638
639
                        ignore(in_col, e.value, e)
640 3077 aaronmk
        except sql.DuplicateKeyException, e:
641
            log_exc(e)
642
643 3274 aaronmk
            # Different rows violating different unique constraints not
644
            # supported
645
            assert not join_cols
646
647 3077 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
648
            log_debug('Ignoring existing rows, comparing on these columns:\n'
649
                +strings.as_inline_table(join_cols, ustr=col_ustr))
650 3102 aaronmk
651 3431 aaronmk
            if is_literals:
652
                return sql.value(sql.select(db, out_table, [out_pkey_col],
653 4025 aaronmk
                    join_cols, order_by=None))
654 3431 aaronmk
655 3102 aaronmk
            # Uniquify input table to avoid internal duplicate keys
656
            insert_in_table = sql.distinct_table(db, insert_in_table,
657 3358 aaronmk
                join_cols.values())
658 3144 aaronmk
            insert_in_tables.append(insert_in_table)
659 3077 aaronmk
        except sql.NullValueException, e:
660
            log_exc(e)
661
662
            out_col, = e.cols
663
            try: in_col = mapping[out_col]
664 3618 aaronmk
            except KeyError, e:
665
                try: in_col = mapping[out_col] = col_defaults[out_col]
666
                except KeyError:
667
                    msg = 'Missing mapping for NOT NULL column '+out_col
668
                    log_debug(msg)
669 3713 aaronmk
                    if default == None: warnings.warn(UserWarning(msg))
670
                        # not an error because sometimes the mappings include
671
                        # extra tables which aren't used by the dataset
672 3618 aaronmk
                    remove_all_rows()
673 3294 aaronmk
            else: ignore(in_col, None, e)
674 3352 aaronmk
        except sql.CheckException, e:
675
            log_exc(e)
676
677
            ignore_cond(e.cond, e)
678 3413 aaronmk
        except sql.InvalidValueException, e:
679
            log_exc(e)
680
681
            for in_col in mapping.values(): ignore(in_col, e.value, e)
682 3474 aaronmk
        except psycopg2.extensions.TransactionRollbackError, e:
683
            log_exc(e)
684
            # retry
685 3077 aaronmk
        except sql.DatabaseErrors, e:
686
            log_exc(e)
687
688
            log_debug('No handler for exception')
689
            on_error(e)
690
            remove_all_rows()
691
        # after exception handled, rerun loop with additional constraints
692
693
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
694
        row_ct_ref[0] += cur.rowcount
695
696 3530 aaronmk
    if is_literals: return sql.value(cur)
697
698
    if is_function: pass # pkeys table already created
699 3077 aaronmk
    elif has_joins:
700
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
701
        log_debug('Getting output table pkeys of existing/inserted rows')
702 4484 aaronmk
        insert_into_pkeys(select_joins, [in_pkey_col,
703
            sql_gen.NamedCol(into_out_pkey, out_pkey_col)])
704 3077 aaronmk
    else:
705
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
706
707
        log_debug('Getting input table pkeys of inserted rows')
708 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
709
        # since the SELECT query is identical to the one used in INSERT SELECT,
710
        # its rows will be retrieved in the same order.
711 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
712
            into=insert_in_pkeys)
713
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
714
715
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
716
            db, insert_in_pkeys)
717
718
        log_debug('Combining output and input pkeys in inserted order')
719
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
720
            {sql.row_num_col: sql_gen.join_same_not_null})]
721 4484 aaronmk
        in_col = sql_gen.Col(in_pkey, insert_in_pkeys)
722
        out_col = sql_gen.NamedCol(into_out_pkey,
723
            sql_gen.Col(out_pkey, insert_out_pkeys))
724
        insert_into_pkeys(pkey_joins, [in_col, out_col])
725 3077 aaronmk
726
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
727
728 3531 aaronmk
    if limit_ref[0] == 0 or not is_function: # is_function doesn't leave holes
729 3187 aaronmk
        log_debug('Setting pkeys of missing rows to '
730 4492 aaronmk
            +strings.as_tt(strings.urepr(default)))
731 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
732 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
733
            # must use join_same_not_null or query will take forever
734
        insert_into_pkeys(missing_rows_joins,
735 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
736 4484 aaronmk
            sql_gen.NamedCol(into_out_pkey, default)])
737 3187 aaronmk
    # otherwise, there is already an entry for every row
738 3077 aaronmk
739 3530 aaronmk
    assert (sql.table_row_count(db, into)
740
        == sql.table_row_count(db, full_in_table))
741
742
    sql.empty_temp(db, insert_in_tables+[full_in_table])
743
744
    srcs = []
745 3619 aaronmk
    if is_function: srcs = sql_gen.cols_srcs(in_cols)
746 4484 aaronmk
    return sql_gen.Col(into_out_pkey, into, srcs)