Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3 3534 aaronmk
import copy
4 4995 aaronmk
import csv
5 3431 aaronmk
import operator
6 3714 aaronmk
import warnings
7 3431 aaronmk
8 4995 aaronmk
import csvs
9 3077 aaronmk
import exc
10
import dicts
11
import sql
12
import sql_gen
13
import strings
14
import util
15
16 3645 aaronmk
##### Exceptions
17
18
# Can't use built-in SyntaxError because it stringifies to only the first line
19
class SyntaxError(Exception): pass
20
21 3081 aaronmk
##### Data cleanup
22
23 4915 aaronmk
null_strs = ['', '-', r'\N', 'NULL', 'UNKNOWN', 'nulo']
24 4209 aaronmk
25 4447 aaronmk
def cleanup_table(db, table):
26 3081 aaronmk
    table = sql_gen.as_Table(table)
27 4914 aaronmk
    cols = [sql_gen.as_Col(strings.ustr(c), table)
28
        for c in sql.table_cols(db, table)]
29 4407 aaronmk
    cols = filter(lambda c: sql_gen.is_text_col(db, c), cols)
30 5129 aaronmk
    try: cols.remove(sql.pkey_col_(db, table))
31
    except ValueError: pass
32 4928 aaronmk
    if not cols: return
33 3081 aaronmk
34 4993 aaronmk
    db.log_debug('Cleaning up table', level=1.5)
35
36 4209 aaronmk
    expr = 'trim(both from %s)'
37
    for null in null_strs: expr = 'nullif('+expr+', '+db.esc_value(null)+')'
38
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db))) for v in cols]
39 3081 aaronmk
40 4444 aaronmk
    while True:
41
        try:
42
            sql.update(db, table, changes, in_place=True, recover=True)
43
            break # successful
44
        except sql.NullValueException, e:
45 4457 aaronmk
            db.log_debug('Caught exception: '+exc.str_(e))
46 4444 aaronmk
            col, = e.cols
47
            sql.drop_not_null(db, col)
48 4992 aaronmk
49
    db.log_debug('Vacuuming and reanalyzing table', level=1.5)
50
    sql.vacuum(db, table)
51 3081 aaronmk
52 3078 aaronmk
##### Error tracking
53
54
def track_data_error(db, errors_table, cols, value, error_code, error):
55
    '''
56
    @param errors_table If None, does nothing.
57
    '''
58
    if errors_table == None or cols == (): return
59
60
    for col in cols:
61
        try:
62
            sql.insert(db, errors_table, dict(column=col.name, value=value,
63
                error_code=error_code, error=error), recover=True,
64
                cacheable=True, log_level=4)
65
        except sql.DuplicateKeyException: pass
66
67 3506 aaronmk
class ExcToErrorsTable(sql_gen.ExcToWarning):
68
    '''Handles an exception by saving it or converting it to a warning.'''
69 3511 aaronmk
    def __init__(self, return_, srcs, errors_table, value=None):
70 3506 aaronmk
        '''
71
        @param return_ See sql_gen.ExcToWarning
72
        @param srcs The column names for the errors table
73
        @param errors_table None|sql_gen.Table
74 3511 aaronmk
        @param value The value (or an expression for it) that caused the error
75 3506 aaronmk
        @pre The invalid value must be in a local variable "value" of type text.
76
        '''
77
        sql_gen.ExcToWarning.__init__(self, return_)
78
79 3511 aaronmk
        value = sql_gen.as_Code(value)
80
81 3506 aaronmk
        self.srcs = srcs
82
        self.errors_table = errors_table
83 3511 aaronmk
        self.value = value
84 3501 aaronmk
85 3506 aaronmk
    def to_str(self, db):
86
        if not self.srcs or self.errors_table == None:
87
            return sql_gen.ExcToWarning.to_str(self, db)
88
89 3459 aaronmk
        errors_table_cols = map(sql_gen.Col,
90
            ['column', 'value', 'error_code', 'error'])
91 3465 aaronmk
        col_names_query = sql.mk_select(db, sql_gen.NamedValues('c', None,
92 3506 aaronmk
            [[c.name] for c in self.srcs]), order_by=None)
93
        insert_query = sql.mk_insert_select(db, self.errors_table,
94
            errors_table_cols,
95 3465 aaronmk
            sql_gen.Values(errors_table_cols).to_str(db))+';\n'
96 3506 aaronmk
        return '''\
97 3459 aaronmk
-- Save error in errors table.
98
DECLARE
99
    error_code text := SQLSTATE;
100
    error text := SQLERRM;
101 3511 aaronmk
    value text := '''+self.value.to_str(db)+''';
102 3529 aaronmk
    "column" text;
103 3459 aaronmk
BEGIN
104
    -- Insert the value and error for *each* source column.
105 3529 aaronmk
'''+strings.indent(sql_gen.RowExcIgnore(None, col_names_query, insert_query,
106 3467 aaronmk
    row_var=errors_table_cols[0]).to_str(db))+'''
107 3459 aaronmk
END;
108 3501 aaronmk
109 3506 aaronmk
'''+self.return_.to_str(db)
110 3459 aaronmk
111 3507 aaronmk
def data_exception_handler(*args, **kw_args):
112 3506 aaronmk
    '''Handles a data_exception by saving it or converting it to a warning.
113
    For params, see ExcToErrorsTable().
114
    '''
115
    return sql_gen.data_exception_handler(ExcToErrorsTable(*args, **kw_args))
116
117 3078 aaronmk
def cast(db, type_, col, errors_table=None):
118
    '''Casts an (unrenamed) column or value.
119
    If errors_table set and col has srcs, saves errors in errors_table (using
120 3360 aaronmk
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
121 3078 aaronmk
    @param col str|sql_gen.Col|sql_gen.Literal
122
    @param errors_table None|sql_gen.Table|str
123
    '''
124
    col = sql_gen.as_Col(col)
125
126 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
127
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
128
129 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
130
131 3460 aaronmk
    function_name = strings.first_word(type_)
132 3459 aaronmk
    srcs = col.srcs
133 3508 aaronmk
    save_errors = errors_table != None and srcs
134
    if save_errors: # function will be unique for the given srcs
135 3750 aaronmk
        function_name = strings.ustr(sql_gen.FunctionCall(function_name,
136 3508 aaronmk
            *map(sql_gen.to_name_only_col, srcs)))
137 3078 aaronmk
    function = db.TempFunction(function_name)
138
139 3464 aaronmk
    # Create function definition
140
    modifiers = 'STRICT'
141
    if not save_errors: modifiers = 'IMMUTABLE '+modifiers
142 3511 aaronmk
    value_param = sql_gen.FunctionParam('value', 'text')
143
    handler = data_exception_handler('RETURN NULL;\n', srcs, errors_table,
144
        value_param.name)
145 3464 aaronmk
    body = sql_gen.CustomCode(handler.to_str(db, '''\
146 3467 aaronmk
/* The explicit cast to the return type is needed to make the cast happen
147
inside the try block. (Implicit casts to the return type happen at the end
148
of the function, outside any block.) */
149
RETURN value::'''+type_+''';
150 3464 aaronmk
'''))
151
    body.lang='plpgsql'
152 3500 aaronmk
    sql.define_func(db, sql_gen.FunctionDef(function, type_, body,
153 3511 aaronmk
        [value_param], modifiers))
154 3464 aaronmk
155 3078 aaronmk
    return sql_gen.FunctionCall(function, col)
156
157 3538 aaronmk
def func_wrapper_exception_handler(db, return_, args, errors_table):
158 3524 aaronmk
    '''Handles a function call's data_exceptions.
159
    Supports PL/Python functions.
160
    @param return_ See data_exception_handler()
161
    @param args [arg...] Function call's args
162
    @param errors_table See data_exception_handler()
163
    '''
164
    args = filter(sql_gen.has_srcs, args)
165
166
    srcs = sql_gen.cross_join_srcs(args)
167 3538 aaronmk
    value = sql_gen.merge_not_null(db, ',', args)
168 3524 aaronmk
    return sql_gen.NestedExcHandler(
169
        data_exception_handler(return_, srcs, errors_table, value)
170
        , sql_gen.plpythonu_error_handler
171
        )
172
173 3078 aaronmk
def cast_temp_col(db, type_, col, errors_table=None):
174
    '''Like cast(), but creates a new column with the cast values if the input
175
    is a column.
176
    @return The new column or cast value
177
    '''
178
    def cast_(col): return cast(db, type_, col, errors_table)
179
180
    try: col = sql_gen.underlying_col(col)
181
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
182
183
    table = col.table
184 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
185 3078 aaronmk
    expr = cast_(col)
186
187
    # Add column
188
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
189 3750 aaronmk
    sql.add_col(db, table, new_typed_col, comment=strings.urepr(col)+'::'+type_)
190 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
191
192 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
193 3078 aaronmk
194
    return new_col
195
196
def errors_table(db, table, if_exists=True):
197
    '''
198
    @param if_exists If set, returns None if the errors table doesn't exist
199
    @return None|sql_gen.Table
200
    '''
201
    table = sql_gen.as_Table(table)
202
    if table.srcs != (): table = table.srcs[0]
203
204
    errors_table = sql_gen.suffixed_table(table, '.errors')
205
    if if_exists and not sql.table_exists(db, errors_table): return None
206
    return errors_table
207
208 4436 aaronmk
def mk_errors_table(db, table):
209
    errors_table_ = errors_table(db, table, if_exists=False)
210 4557 aaronmk
    if sql.table_exists(db, errors_table_, cacheable=False): return
211 4436 aaronmk
212
    typed_cols = [
213
        sql_gen.TypedCol('column', 'text', nullable=False),
214
        sql_gen.TypedCol('value', 'text'),
215
        sql_gen.TypedCol('error_code', 'character varying(5)', nullable=False),
216
        sql_gen.TypedCol('error', 'text', nullable=False),
217
        ]
218
    sql.create_table(db, errors_table_, typed_cols, has_pkey=False)
219
    index_cols = ['column', 'value', 'error_code', 'error']
220
    sql.add_index(db, index_cols, errors_table_, unique=True)
221
222 3078 aaronmk
##### Import
223
224 5017 aaronmk
def append_csv(db, table, stream_info, stream, use_copy_from=True):
225 5037 aaronmk
    assert sql.table_cols(db, table) == stream_info.header
226
227 5017 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
228
229
    dialect = stream_info.dialect
230
    if csvs.is_tsv(dialect): use_copy_from = False
231
    if use_copy_from:
232
        log('Using COPY FROM')
233
234
        # Create COPY FROM statement
235
        copy_from = ('COPY '+table.to_str(db)+' FROM STDIN DELIMITER '
236
            +db.esc_value(dialect.delimiter)+' NULL '+db.esc_value(''))
237
        assert not csvs.is_tsv(dialect)
238
        copy_from += ' CSV'
239
        if dialect.quoting != csv.QUOTE_NONE:
240
            quote_str = db.esc_value(dialect.quotechar)
241
            copy_from += ' QUOTE '+quote_str
242
            if dialect.doublequote: copy_from += ' ESCAPE '+quote_str
243
        copy_from += ';\n'
244
245
        log(copy_from, level=2)
246
        db.db.cursor().copy_expert(copy_from, stream)
247
    else:
248
        log('Using INSERT')
249
        cols_ct = len(stream_info.header)
250
        for row in csvs.make_reader(stream, dialect):
251
            row = map(strings.to_unicode, row)
252
            util.list_set_length(row, cols_ct) # truncate extra cols
253 5051 aaronmk
            sql.insert(db, table, row, ignore=True, cacheable=False,
254
                log_level=5)
255 5017 aaronmk
256 5027 aaronmk
def import_csv(db, table, stream, use_copy_from=True):
257 4995 aaronmk
    def log(msg, level=1): db.log_debug(msg, level)
258
259
    # Get format info
260
    info = csvs.stream_info(stream, parse_header=True)
261
    col_names = map(strings.to_unicode, info.header)
262
    for i, col in enumerate(col_names): # replace empty column names
263
        if col == '': col_names[i] = 'column_'+str(i)
264
265
    # Select schema and escape names
266
    def esc_name(name): return db.esc_name(name)
267
268
    typed_cols = [sql_gen.TypedCol(v, 'text') for v in col_names]
269
270
    log('Creating table')
271 4999 aaronmk
    # Note that this is not rolled back if the import fails. Instead, it is
272
    # cached, and will not be re-run if the import is retried.
273 4995 aaronmk
    sql.create_table(db, table, typed_cols, has_pkey=False, col_indexes=False)
274
275 5001 aaronmk
    # Free memory used by deleted (rolled back) rows from any failed import.
276
    # This MUST be run so that the rows will be stored in inserted order, and
277
    # the row_num added after import will match up with the CSV's row order.
278 4999 aaronmk
    sql.truncate(db, table)
279
280 4995 aaronmk
    # Load the data
281 5025 aaronmk
    def load(): append_csv(db, table, info, stream, use_copy_from)
282
    if use_copy_from: sql.with_savepoint(db, load)
283
    else: load()
284 4995 aaronmk
285
    cleanup_table(db, table)
286
287 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
288
    '''Recovers from errors.
289
    Only works under PostgreSQL (uses INSERT RETURNING).
290
    '''
291 3633 aaronmk
    return put_table(db, table, [], row, row_ct_ref)
292 3077 aaronmk
293
def get(db, table, row, pkey, row_ct_ref=None, create=False):
294
    '''Recovers from errors'''
295
    try:
296
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
297
            recover=True))
298
    except StopIteration:
299
        if not create: raise
300
        return put(db, table, row, pkey, row_ct_ref) # insert new row
301
302
def is_func_result(col):
303
    return col.table.name.find('(') >= 0 and col.name == 'result'
304
305
def into_table_name(out_table, in_tables0, mapping, is_func):
306
    def in_col_str(in_col):
307
        in_col = sql_gen.remove_col_rename(in_col)
308
        if isinstance(in_col, sql_gen.Col):
309
            table = in_col.table
310
            if table == in_tables0:
311
                in_col = sql_gen.to_name_only_col(in_col)
312
            elif is_func_result(in_col): in_col = table # omit col name
313 3750 aaronmk
        return strings.ustr(in_col)
314 3077 aaronmk
315 4491 aaronmk
    str_ = strings.ustr(out_table)
316 3077 aaronmk
    if is_func:
317
        str_ += '('
318
319
        try: value_in_col = mapping['value']
320
        except KeyError:
321 4491 aaronmk
            str_ += ', '.join((strings.ustr(k)+'='+in_col_str(v)
322 3077 aaronmk
                for k, v in mapping.iteritems()))
323
        else: str_ += in_col_str(value_in_col)
324
325
        str_ += ')'
326
    else:
327
        out_col = 'rank'
328
        try: in_col = mapping[out_col]
329
        except KeyError: str_ += '_pkeys'
330
        else: # has a rank column, so hierarchical
331 4491 aaronmk
            str_ += '['+strings.ustr(out_col)+'='+in_col_str(in_col)+']'
332 3077 aaronmk
    return str_
333
334 3628 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, default=None,
335 3660 aaronmk
    col_defaults={}, on_error=exc.reraise):
336 3077 aaronmk
    '''Recovers from errors.
337
    Only works under PostgreSQL (uses INSERT RETURNING).
338
    IMPORTANT: Must be run at the *beginning* of a transaction.
339
    @param in_tables The main input table to select from, followed by a list of
340
        tables to join with it using the main input table's pkey
341
    @param mapping dict(out_table_col=in_table_col, ...)
342
        * out_table_col: str (*not* sql_gen.Col)
343
        * in_table_col: sql_gen.Col|literal-value
344
    @param default The *output* column to use as the pkey for missing rows.
345
        If this output column does not exist in the mapping, uses None.
346 3618 aaronmk
    @param col_defaults Default values for required columns.
347 3077 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
348
    '''
349 3474 aaronmk
    import psycopg2.extensions
350
351 3077 aaronmk
    out_table = sql_gen.as_Table(out_table)
352
353
    def log_debug(msg): db.log_debug(msg, level=1.5)
354
    def col_ustr(str_):
355
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
356
357
    log_debug('********** New iteration **********')
358
    log_debug('Inserting these input columns into '+strings.as_tt(
359
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
360
361
    is_function = sql.function_exists(db, out_table)
362
363 4984 aaronmk
    # Warn if inserting empty table rows
364
    if not mapping and not is_function: # functions with no args OK
365
        warnings.warn(UserWarning('Inserting empty table row(s)'))
366
367 3077 aaronmk
    if is_function: out_pkey = 'result'
368
    else: out_pkey = sql.pkey(db, out_table, recover=True)
369
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
370
371 5069 aaronmk
    in_tables_ = copy.copy(in_tables) # don't modify input!
372 3432 aaronmk
    try: in_tables0 = in_tables_.pop(0) # first table is separate
373
    except IndexError: in_tables0 = None
374
    else:
375
        in_pkey = sql.pkey(db, in_tables0, recover=True)
376
        in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
377 3431 aaronmk
378
    # Determine if can use optimization for only literal values
379
    is_literals = not reduce(operator.or_, map(sql_gen.is_table_col,
380 3434 aaronmk
        mapping.values()), False)
381 3431 aaronmk
    is_literals_or_function = is_literals or is_function
382
383 3432 aaronmk
    if in_tables0 == None: errors_table_ = None
384
    else: errors_table_ = errors_table(db, in_tables0)
385 3431 aaronmk
386
    # Create input joins from list of input tables
387 3077 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
388
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
389
390 3433 aaronmk
    if mapping == {} and not is_function: # need >= one column for INSERT SELECT
391
        mapping = {out_pkey: None} # ColDict will replace with default value
392
393 3431 aaronmk
    if not is_literals:
394 3628 aaronmk
        into = sql_gen.as_Table(into_table_name(out_table, in_tables0, mapping,
395
            is_function))
396 4484 aaronmk
        # Ensure into's out_pkey is different from in_pkey by prepending table
397 4495 aaronmk
        if is_function: into_out_pkey = out_pkey
398
        else: into_out_pkey = strings.ustr(out_pkey_col)
399 3431 aaronmk
400
        # Set column sources
401
        in_cols = filter(sql_gen.is_table_col, mapping.values())
402
        for col in in_cols:
403
            if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
404
405
        log_debug('Joining together input tables into temp table')
406
        # Place in new table so don't modify input and for speed
407
        in_table = sql_gen.Table('in')
408
        mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
409
            in_cols, preserve=[in_pkey_col]))
410
        input_joins = [in_table]
411
        db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
412 3077 aaronmk
413 3692 aaronmk
    # Wrap mapping in a sql_gen.ColDict.
414
    # sql_gen.ColDict sanitizes both keys and values passed into it.
415
    # Do after applying dicts.join() because that returns a plain dict.
416 3077 aaronmk
    mapping = sql_gen.ColDict(db, out_table, mapping)
417
418
    # Resolve default value column
419
    if default != None:
420
        try: default = mapping[default]
421
        except KeyError:
422
            db.log_debug('Default value column '
423
                +strings.as_tt(strings.repr_no_u(default))
424
                +' does not exist in mapping, falling back to None', level=2.1)
425
            default = None
426
427 3287 aaronmk
    # Save default values for all rows since in_table may have rows deleted
428 3431 aaronmk
    if is_literals: pass
429
    elif is_function: full_in_table = in_table
430 3386 aaronmk
    else:
431
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
432
        full_in_table_cols = [in_pkey_col]
433
        if default != None:
434
            full_in_table_cols.append(default)
435
            default = sql_gen.with_table(default, full_in_table)
436
        sql.run_query_into(db, sql.mk_select(db, in_table, full_in_table_cols,
437
            order_by=None), into=full_in_table, add_pkey_=True)
438 3287 aaronmk
439 3077 aaronmk
    pkeys_table_exists_ref = [False]
440 3499 aaronmk
    def insert_into_pkeys(joins, cols=None, limit=None, **kw_args):
441 3477 aaronmk
        query = sql.mk_select(db, joins, cols, order_by=None, limit=limit)
442 3077 aaronmk
        if pkeys_table_exists_ref[0]:
443 4484 aaronmk
            sql.insert_select(db, into, [in_pkey, into_out_pkey], query,
444
                **kw_args)
445 3077 aaronmk
        else:
446 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
447 3077 aaronmk
            pkeys_table_exists_ref[0] = True
448
449
    limit_ref = [None]
450 3418 aaronmk
    def mk_main_select(joins, cols):
451
        return sql.mk_select(db, joins, cols, limit=limit_ref[0], order_by=None)
452
453 3431 aaronmk
    if is_literals: insert_in_table = None
454
    else:
455
        insert_in_table = in_table
456
        insert_in_tables = [insert_in_table]
457 3352 aaronmk
    join_cols = sql_gen.ColDict(db, out_table)
458 3077 aaronmk
459
    exc_strs = set()
460
    def log_exc(e):
461
        e_str = exc.str_(e, first_line_only=True)
462
        log_debug('Caught exception: '+e_str)
463 3552 aaronmk
        if e_str in exc_strs: # avoid infinite loops
464
            log_debug('Exception already seen, handler broken')
465
            on_error(e)
466
            remove_all_rows()
467
        else: exc_strs.add(e_str)
468 3077 aaronmk
469
    def remove_all_rows():
470
        log_debug('Ignoring all rows')
471
        limit_ref[0] = 0 # just create an empty pkeys table
472
473 3352 aaronmk
    def ignore_cond(cond, e):
474 3704 aaronmk
        if is_literals: remove_all_rows()
475
        else:
476
            out_table_cols = sql_gen.ColDict(db, out_table)
477
            out_table_cols.update(util.dict_subset_right_join({},
478
                sql.table_cols(db, out_table)))
479
480
            in_cols = []
481
            cond = sql.map_expr(db, cond, mapping, in_cols)
482
            cond = sql.map_expr(db, cond, out_table_cols)
483
484
            track_data_error(db, errors_table_, sql_gen.cols_srcs(in_cols),
485
                None, e.cause.pgcode,
486
                strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
487
488
            not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
489
            log_debug('Ignoring rows where '+strings.as_tt(not_cond.to_str(db)))
490
            sql.delete(db, insert_in_table, not_cond)
491 3352 aaronmk
492 3294 aaronmk
    not_null_cols = set()
493 3077 aaronmk
    def ignore(in_col, value, e):
494 3630 aaronmk
        if sql_gen.is_table_col(in_col):
495
            in_col = sql_gen.with_table(in_col, insert_in_table)
496
497
            track_data_error(db, errors_table_, in_col.srcs, value,
498
                e.cause.pgcode, e.cause.pgerror)
499
500
            sql.add_index(db, in_col, insert_in_table) # enable fast filtering
501
            if value != None and in_col not in not_null_cols:
502 4492 aaronmk
                log_debug('Replacing invalid value '
503
                    +strings.as_tt(strings.urepr(value))+' with NULL in column '
504
                    +strings.as_tt(in_col.to_str(db)))
505 3630 aaronmk
                sql.update(db, insert_in_table, [(in_col, None)],
506
                    sql_gen.ColValueCond(in_col, value))
507
            else:
508 3637 aaronmk
                log_debug('Ignoring rows with '+strings.as_tt(in_col.to_str(db))
509 4492 aaronmk
                    +' = '+strings.as_tt(strings.urepr(value)))
510 3630 aaronmk
                sql.delete(db, insert_in_table,
511
                    sql_gen.ColValueCond(in_col, value))
512
                if value == None: not_null_cols.add(in_col)
513 3293 aaronmk
        else:
514 3630 aaronmk
            assert isinstance(in_col, sql_gen.NamedCol)
515 3684 aaronmk
            in_value = sql_gen.remove_col_rename(in_col)
516
            assert sql_gen.is_literal(in_value)
517
            if value == in_value.value:
518
                if value != None:
519
                    log_debug('Replacing invalid literal '
520
                        +strings.as_tt(in_col.to_str(db))+' with NULL')
521
                    mapping[in_col.name] = None
522
                else:
523
                    remove_all_rows()
524
            # otherwise, all columns were being ignore()d because the specific
525
            # column couldn't be identified, and this was not the invalid column
526 3077 aaronmk
527 3431 aaronmk
    if not is_literals:
528
        def insert_pkeys_table(which):
529
            return sql_gen.Table(sql_gen.concat(in_table.name,
530
                '_insert_'+which+'_pkeys'))
531
        insert_out_pkeys = insert_pkeys_table('out')
532
        insert_in_pkeys = insert_pkeys_table('in')
533 3077 aaronmk
534 3918 aaronmk
    def mk_func_call():
535 3550 aaronmk
        args = dict(((k.name, v) for k, v in mapping.iteritems()))
536 4484 aaronmk
        return sql_gen.FunctionCall(out_table, **args), args
537 3550 aaronmk
538 3918 aaronmk
    if is_function and not is_literals:
539
        log_debug('Defining wrapper function')
540
541
        func_call, args = mk_func_call()
542 4484 aaronmk
        func_call = sql_gen.NamedCol(into_out_pkey, func_call)
543 3918 aaronmk
544
        # Create empty pkeys table so its row type can be used
545
        insert_into_pkeys(input_joins, [in_pkey_col, func_call], limit=0,
546
            recover=True)
547 4484 aaronmk
        result_type = db.col_info(sql_gen.Col(into_out_pkey, into)).type
548 3918 aaronmk
549
        ## Create error handling wrapper function
550
551
        wrapper = db.TempFunction(sql_gen.concat(into.name, '_wrap'))
552
553
        select_cols = [in_pkey_col]+args.values()
554
        row_var = copy.copy(sql_gen.row_var)
555
        row_var.set_srcs([in_table])
556
        in_pkey_var = sql_gen.Col(in_pkey, row_var)
557
558
        args = dict(((k, sql_gen.with_table(v, row_var))
559
            for k, v in args.iteritems()))
560
        func_call = sql_gen.FunctionCall(out_table, **args)
561
562
        def mk_return(result):
563
            return sql_gen.ReturnQuery(sql.mk_select(db,
564
                fields=[in_pkey_var, result], explain=False))
565
        exc_handler = func_wrapper_exception_handler(db,
566
            mk_return(sql_gen.Cast(result_type, None)), args.values(),
567
            errors_table_)
568
569
        sql.define_func(db, sql_gen.FunctionDef(wrapper, sql_gen.SetOf(into),
570
            sql_gen.RowExcIgnore(sql_gen.RowType(in_table),
571
                sql.mk_select(db, input_joins, order_by=None),
572
                mk_return(func_call), exc_handler=exc_handler)
573
            ))
574
        wrapper_table = sql_gen.FunctionCall(wrapper)
575 3550 aaronmk
576 3077 aaronmk
    # Do inserts and selects
577
    while True:
578 3473 aaronmk
        has_joins = join_cols != {}
579
580 3551 aaronmk
        # Handle unrecoverable errors in a special case
581
        if limit_ref[0] == 0:
582 4207 aaronmk
            if is_literals or default == None:
583 3686 aaronmk
                default = sql_gen.remove_col_rename(default)
584 4492 aaronmk
                log_debug('Returning default: '
585
                    +strings.as_tt(strings.urepr(default)))
586 3623 aaronmk
                return default
587 3551 aaronmk
            elif is_function: pass # empty pkeys table already created
588
            else:
589
                log_debug('Creating an empty output pkeys table')
590 3745 aaronmk
                has_joins = False # use the no-joins case
591 3551 aaronmk
                cur = sql.run_query_into(db, sql.mk_select(db, out_table,
592
                    [out_pkey], order_by=None, limit=0), into=insert_out_pkeys)
593
594 3077 aaronmk
            break # don't do main case
595
596
        # Prepare to insert new rows
597 3918 aaronmk
        if is_function:
598
            log_debug('Calling function on input rows')
599
            if is_literals: func_call, args = mk_func_call()
600 3077 aaronmk
        else:
601 3550 aaronmk
            log_debug('Trying to insert new rows')
602 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
603
            if has_joins:
604
                insert_args.update(dict(ignore=True))
605
            else:
606 3431 aaronmk
                insert_args.update(dict(returning=out_pkey))
607
                if not is_literals:
608
                    insert_args.update(dict(into=insert_out_pkeys))
609 3291 aaronmk
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
610
                c, insert_in_table) for c in mapping.values()])
611 3077 aaronmk
612 3292 aaronmk
        try:
613
            cur = None
614 3077 aaronmk
            if is_function:
615 3917 aaronmk
                if is_literals:
616
                    cur = sql.select(db, fields=[func_call], recover=True,
617
                        cacheable=True)
618 3499 aaronmk
                else: insert_into_pkeys(wrapper_table, recover=True)
619 3077 aaronmk
            else:
620 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
621 3077 aaronmk
                    main_select, **insert_args)
622
            break # insert successful
623
        except sql.MissingCastException, e:
624
            log_exc(e)
625
626
            type_ = e.type
627 4140 aaronmk
            if e.col == None: out_cols = mapping.keys()
628
            else: out_cols = [e.col]
629 3077 aaronmk
630 4140 aaronmk
            for out_col in out_cols:
631 4171 aaronmk
                log_debug('Casting '+strings.as_tt(strings.repr_no_u(out_col))
632 4140 aaronmk
                    +' input to '+strings.as_tt(type_))
633
                in_col = mapping[out_col]
634
                while True:
635
                    try:
636
                        mapping[out_col] = cast_temp_col(db, type_, in_col,
637
                            errors_table_)
638
                        break # cast successful
639
                    except sql.InvalidValueException, e:
640
                        log_exc(e)
641
642
                        ignore(in_col, e.value, e)
643 3077 aaronmk
        except sql.DuplicateKeyException, e:
644
            log_exc(e)
645
646 3274 aaronmk
            # Different rows violating different unique constraints not
647
            # supported
648
            assert not join_cols
649
650 3077 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
651
            log_debug('Ignoring existing rows, comparing on these columns:\n'
652
                +strings.as_inline_table(join_cols, ustr=col_ustr))
653 3102 aaronmk
654 3431 aaronmk
            if is_literals:
655
                return sql.value(sql.select(db, out_table, [out_pkey_col],
656 4025 aaronmk
                    join_cols, order_by=None))
657 3431 aaronmk
658 3102 aaronmk
            # Uniquify input table to avoid internal duplicate keys
659
            insert_in_table = sql.distinct_table(db, insert_in_table,
660 3358 aaronmk
                join_cols.values())
661 3144 aaronmk
            insert_in_tables.append(insert_in_table)
662 3077 aaronmk
        except sql.NullValueException, e:
663
            log_exc(e)
664
665
            out_col, = e.cols
666
            try: in_col = mapping[out_col]
667 3618 aaronmk
            except KeyError, e:
668
                try: in_col = mapping[out_col] = col_defaults[out_col]
669
                except KeyError:
670
                    msg = 'Missing mapping for NOT NULL column '+out_col
671
                    log_debug(msg)
672 3713 aaronmk
                    if default == None: warnings.warn(UserWarning(msg))
673
                        # not an error because sometimes the mappings include
674
                        # extra tables which aren't used by the dataset
675 3618 aaronmk
                    remove_all_rows()
676 3294 aaronmk
            else: ignore(in_col, None, e)
677 3352 aaronmk
        except sql.CheckException, e:
678
            log_exc(e)
679
680
            ignore_cond(e.cond, e)
681 3413 aaronmk
        except sql.InvalidValueException, e:
682
            log_exc(e)
683
684
            for in_col in mapping.values(): ignore(in_col, e.value, e)
685 3474 aaronmk
        except psycopg2.extensions.TransactionRollbackError, e:
686
            log_exc(e)
687
            # retry
688 3077 aaronmk
        except sql.DatabaseErrors, e:
689
            log_exc(e)
690
691
            log_debug('No handler for exception')
692
            on_error(e)
693
            remove_all_rows()
694
        # after exception handled, rerun loop with additional constraints
695
696
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
697
        row_ct_ref[0] += cur.rowcount
698
699 3530 aaronmk
    if is_literals: return sql.value(cur)
700
701
    if is_function: pass # pkeys table already created
702 3077 aaronmk
    elif has_joins:
703
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
704
        log_debug('Getting output table pkeys of existing/inserted rows')
705 4484 aaronmk
        insert_into_pkeys(select_joins, [in_pkey_col,
706
            sql_gen.NamedCol(into_out_pkey, out_pkey_col)])
707 3077 aaronmk
    else:
708
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
709
710
        log_debug('Getting input table pkeys of inserted rows')
711 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
712
        # since the SELECT query is identical to the one used in INSERT SELECT,
713
        # its rows will be retrieved in the same order.
714 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
715
            into=insert_in_pkeys)
716
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
717
718
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
719
            db, insert_in_pkeys)
720
721
        log_debug('Combining output and input pkeys in inserted order')
722
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
723
            {sql.row_num_col: sql_gen.join_same_not_null})]
724 4484 aaronmk
        in_col = sql_gen.Col(in_pkey, insert_in_pkeys)
725
        out_col = sql_gen.NamedCol(into_out_pkey,
726
            sql_gen.Col(out_pkey, insert_out_pkeys))
727
        insert_into_pkeys(pkey_joins, [in_col, out_col])
728 3077 aaronmk
729
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
730
731 3531 aaronmk
    if limit_ref[0] == 0 or not is_function: # is_function doesn't leave holes
732 3187 aaronmk
        log_debug('Setting pkeys of missing rows to '
733 4492 aaronmk
            +strings.as_tt(strings.urepr(default)))
734 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
735 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
736
            # must use join_same_not_null or query will take forever
737
        insert_into_pkeys(missing_rows_joins,
738 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
739 4484 aaronmk
            sql_gen.NamedCol(into_out_pkey, default)])
740 3187 aaronmk
    # otherwise, there is already an entry for every row
741 3077 aaronmk
742 3530 aaronmk
    assert (sql.table_row_count(db, into)
743
        == sql.table_row_count(db, full_in_table))
744
745
    sql.empty_temp(db, insert_in_tables+[full_in_table])
746
747
    srcs = []
748 3619 aaronmk
    if is_function: srcs = sql_gen.cols_srcs(in_cols)
749 4484 aaronmk
    return sql_gen.Col(into_out_pkey, into, srcs)