1 |
53
|
aaronmk
|
#!/usr/bin/env python
|
2 |
|
|
# Maps one datasource to another, using a map spreadsheet if needed
|
3 |
986
|
aaronmk
|
# Exit status is the # of errors in the import, up to the maximum exit status
|
4 |
53
|
aaronmk
|
# For outputting an XML file to a PostgreSQL database, use the general format of
|
5 |
|
|
# http://vegbank.org/vegdocs/xml/vegbank_example_ver1.0.2.xml
|
6 |
|
|
|
7 |
1014
|
aaronmk
|
import csv
|
8 |
1714
|
aaronmk
|
import itertools
|
9 |
53
|
aaronmk
|
import os.path
|
10 |
|
|
import sys
|
11 |
299
|
aaronmk
|
import xml.dom.minidom as minidom
|
12 |
53
|
aaronmk
|
|
13 |
266
|
aaronmk
|
sys.path.append(os.path.dirname(__file__)+"/../lib")
|
14 |
53
|
aaronmk
|
|
15 |
1389
|
aaronmk
|
import csvs
|
16 |
2040
|
aaronmk
|
import db_xml
|
17 |
344
|
aaronmk
|
import exc
|
18 |
1714
|
aaronmk
|
import iters
|
19 |
1705
|
aaronmk
|
import maps
|
20 |
64
|
aaronmk
|
import opts
|
21 |
2035
|
aaronmk
|
import parallelproc
|
22 |
281
|
aaronmk
|
import Parser
|
23 |
982
|
aaronmk
|
import profiling
|
24 |
131
|
aaronmk
|
import sql
|
25 |
2288
|
aaronmk
|
import sql_gen
|
26 |
1758
|
aaronmk
|
import streams
|
27 |
715
|
aaronmk
|
import strings
|
28 |
828
|
aaronmk
|
import term
|
29 |
310
|
aaronmk
|
import util
|
30 |
1014
|
aaronmk
|
import xpath
|
31 |
133
|
aaronmk
|
import xml_dom
|
32 |
86
|
aaronmk
|
import xml_func
|
33 |
1713
|
aaronmk
|
import xml_parse
|
34 |
53
|
aaronmk
|
|
35 |
1404
|
aaronmk
|
def get_with_prefix(map_, prefixes, key):
|
36 |
2040
|
aaronmk
|
'''Gets all entries for the given key with any of the given prefixes
|
37 |
|
|
@return tuple(found_key, found_value)
|
38 |
|
|
'''
|
39 |
1484
|
aaronmk
|
values = []
|
40 |
1681
|
aaronmk
|
for key_ in strings.with_prefixes(['']+prefixes, key): # also with no prefix
|
41 |
|
|
try: value = map_[key_]
|
42 |
1484
|
aaronmk
|
except KeyError, e: continue # keep going
|
43 |
2040
|
aaronmk
|
values.append((key_, value))
|
44 |
1484
|
aaronmk
|
|
45 |
|
|
if values != []: return values
|
46 |
|
|
else: raise e # re-raise last KeyError
|
47 |
1404
|
aaronmk
|
|
48 |
1018
|
aaronmk
|
def metadata_value(name): return None # this feature has been removed
|
49 |
84
|
aaronmk
|
|
50 |
1360
|
aaronmk
|
def cleanup(val):
|
51 |
|
|
if val == None: return val
|
52 |
1374
|
aaronmk
|
return util.none_if(strings.cleanup(strings.ustr(val)), u'', u'\\N')
|
53 |
1360
|
aaronmk
|
|
54 |
847
|
aaronmk
|
def main_():
|
55 |
131
|
aaronmk
|
env_names = []
|
56 |
|
|
def usage_err():
|
57 |
944
|
aaronmk
|
raise SystemExit('Usage: '+opts.env_usage(env_names, True)+' '
|
58 |
1945
|
aaronmk
|
+sys.argv[0]+' [map_path...] [<input] [>output]\n'
|
59 |
1946
|
aaronmk
|
'Note: Row #s start with 1')
|
60 |
838
|
aaronmk
|
|
61 |
1570
|
aaronmk
|
## Get config from env vars
|
62 |
838
|
aaronmk
|
|
63 |
1570
|
aaronmk
|
# Modes
|
64 |
946
|
aaronmk
|
test = opts.env_flag('test', False, env_names)
|
65 |
947
|
aaronmk
|
commit = opts.env_flag('commit', False, env_names) and not test
|
66 |
944
|
aaronmk
|
# never commit in test mode
|
67 |
947
|
aaronmk
|
redo = opts.env_flag('redo', test, env_names) and not commit
|
68 |
|
|
# never redo in commit mode (manually run `make empty_db` instead)
|
69 |
1570
|
aaronmk
|
|
70 |
|
|
# Ranges
|
71 |
1946
|
aaronmk
|
start = util.cast(int, opts.get_env_var('start', 1, env_names)) # 1-based
|
72 |
|
|
# Make start interally 0-based.
|
73 |
|
|
# It's 1-based to the user to match up with the staging table row #s.
|
74 |
|
|
start -= 1
|
75 |
1945
|
aaronmk
|
if test: n_default = 1
|
76 |
|
|
else: n_default = None
|
77 |
|
|
n = util.cast(int, util.none_if(opts.get_env_var('n', n_default, env_names),
|
78 |
|
|
u''))
|
79 |
|
|
end = n
|
80 |
1570
|
aaronmk
|
if end != None: end += start
|
81 |
|
|
|
82 |
|
|
# Debugging
|
83 |
2447
|
aaronmk
|
verbosity = util.cast(float, opts.get_env_var('verbose', 0, env_names))
|
84 |
2118
|
aaronmk
|
verbose_errors = opts.env_flag('verbose_errors', test or debug, env_names)
|
85 |
2439
|
aaronmk
|
if opts.env_flag('debug', False, env_names): verbosity = max(verbosity, 2)
|
86 |
944
|
aaronmk
|
opts.get_env_var('profile_to', None, env_names) # add to env_names
|
87 |
131
|
aaronmk
|
|
88 |
1570
|
aaronmk
|
# DB
|
89 |
|
|
def get_db_config(prefix):
|
90 |
1926
|
aaronmk
|
return opts.get_env_vars(sql.db_config_names, prefix, env_names)
|
91 |
1570
|
aaronmk
|
in_db_config = get_db_config('in')
|
92 |
|
|
out_db_config = get_db_config('out')
|
93 |
|
|
in_is_db = 'engine' in in_db_config
|
94 |
|
|
out_is_db = 'engine' in out_db_config
|
95 |
1982
|
aaronmk
|
in_schema = opts.get_env_var('in_schema', None, env_names)
|
96 |
|
|
in_table = opts.get_env_var('in_table', None, env_names)
|
97 |
1570
|
aaronmk
|
|
98 |
1989
|
aaronmk
|
# Optimization
|
99 |
2050
|
aaronmk
|
cache_sql = opts.env_flag('cache_sql', True, env_names)
|
100 |
1989
|
aaronmk
|
by_col = in_db_config == out_db_config and opts.env_flag('by_col', False,
|
101 |
|
|
env_names) # by-column optimization only applies if mapping to same DB
|
102 |
|
|
if test: cpus_default = 0
|
103 |
2044
|
aaronmk
|
else: cpus_default = 0 # or None to use parallel processing by default
|
104 |
1989
|
aaronmk
|
cpus = util.cast(int, util.none_if(opts.get_env_var('cpus', cpus_default,
|
105 |
|
|
env_names), u''))
|
106 |
|
|
|
107 |
1570
|
aaronmk
|
##
|
108 |
|
|
|
109 |
838
|
aaronmk
|
# Logging
|
110 |
2449
|
aaronmk
|
debug = verbosity > 1
|
111 |
2439
|
aaronmk
|
sql.run_raw_query.debug = debug
|
112 |
|
|
def log(msg, level=1):
|
113 |
|
|
'''Higher level -> more verbose'''
|
114 |
2452
|
aaronmk
|
if level <= verbosity:
|
115 |
|
|
if level > 1: msg = '['+str(level)+'] '+msg # include level in msg
|
116 |
|
|
sys.stderr.write(msg+'\n')
|
117 |
2439
|
aaronmk
|
if debug: log_debug = lambda msg, level=2: log(msg, level)
|
118 |
1901
|
aaronmk
|
else: log_debug = sql.log_debug_none
|
119 |
662
|
aaronmk
|
|
120 |
53
|
aaronmk
|
# Parse args
|
121 |
510
|
aaronmk
|
map_paths = sys.argv[1:]
|
122 |
512
|
aaronmk
|
if map_paths == []:
|
123 |
|
|
if in_is_db or not out_is_db: usage_err()
|
124 |
|
|
else: map_paths = [None]
|
125 |
53
|
aaronmk
|
|
126 |
646
|
aaronmk
|
def connect_db(db_config):
|
127 |
1901
|
aaronmk
|
log('Connecting to '+sql.db_config_str(db_config))
|
128 |
2192
|
aaronmk
|
return sql.connect(db_config, caching=cache_sql,
|
129 |
|
|
autocommit=debug and commit, log_debug=log_debug)
|
130 |
646
|
aaronmk
|
|
131 |
1945
|
aaronmk
|
if end != None: end_str = str(end-1) # end is one past the last #
|
132 |
1573
|
aaronmk
|
else: end_str = 'end'
|
133 |
1901
|
aaronmk
|
log('Processing input rows '+str(start)+'-'+end_str)
|
134 |
1573
|
aaronmk
|
|
135 |
1014
|
aaronmk
|
ex_tracker = exc.ExPercentTracker(iter_text='row')
|
136 |
|
|
profiler = profiling.ItersProfiler(start_now=True, iter_text='row')
|
137 |
|
|
|
138 |
1856
|
aaronmk
|
# Parallel processing
|
139 |
2035
|
aaronmk
|
pool = parallelproc.MultiProducerPool(cpus)
|
140 |
1901
|
aaronmk
|
log('Using '+str(pool.process_ct)+' parallel CPUs')
|
141 |
1846
|
aaronmk
|
|
142 |
1014
|
aaronmk
|
doc = xml_dom.create_doc()
|
143 |
|
|
root = doc.documentElement
|
144 |
751
|
aaronmk
|
out_is_xml_ref = [False]
|
145 |
1014
|
aaronmk
|
in_label_ref = [None]
|
146 |
|
|
def update_in_label():
|
147 |
|
|
if in_label_ref[0] != None:
|
148 |
|
|
xpath.get(root, '/_ignore/inLabel="'+in_label_ref[0]+'"', True)
|
149 |
|
|
def prep_root():
|
150 |
|
|
root.clear()
|
151 |
|
|
update_in_label()
|
152 |
|
|
prep_root()
|
153 |
751
|
aaronmk
|
|
154 |
1991
|
aaronmk
|
# Define before the out_is_db section because it's used by by_col
|
155 |
|
|
row_ins_ct_ref = [0]
|
156 |
|
|
|
157 |
838
|
aaronmk
|
def process_input(root, row_ready, map_path):
|
158 |
512
|
aaronmk
|
'''Inputs datasource to XML tree, mapping if needed'''
|
159 |
|
|
# Load map header
|
160 |
|
|
in_is_xpaths = True
|
161 |
751
|
aaronmk
|
out_is_xpaths = True
|
162 |
512
|
aaronmk
|
out_label = None
|
163 |
|
|
if map_path != None:
|
164 |
|
|
metadata = []
|
165 |
|
|
mappings = []
|
166 |
|
|
stream = open(map_path, 'rb')
|
167 |
|
|
reader = csv.reader(stream)
|
168 |
|
|
in_label, out_label = reader.next()[:2]
|
169 |
1402
|
aaronmk
|
|
170 |
512
|
aaronmk
|
def split_col_name(name):
|
171 |
1402
|
aaronmk
|
label, sep, root = name.partition(':')
|
172 |
|
|
label, sep2, prefixes_str = label.partition('[')
|
173 |
|
|
prefixes_str = strings.remove_suffix(']', prefixes_str)
|
174 |
|
|
prefixes = strings.split(',', prefixes_str)
|
175 |
|
|
return label, sep != '', root, prefixes
|
176 |
1198
|
aaronmk
|
# extract datasrc from "datasrc[data_format]"
|
177 |
1402
|
aaronmk
|
|
178 |
1705
|
aaronmk
|
in_label, in_root, prefixes = maps.col_info(in_label)
|
179 |
|
|
in_is_xpaths = in_root != None
|
180 |
1014
|
aaronmk
|
in_label_ref[0] = in_label
|
181 |
|
|
update_in_label()
|
182 |
1705
|
aaronmk
|
out_label, out_root = maps.col_info(out_label)[:2]
|
183 |
|
|
out_is_xpaths = out_root != None
|
184 |
1841
|
aaronmk
|
if out_is_xpaths: has_types = out_root.find('/*s/') >= 0
|
185 |
1705
|
aaronmk
|
# outer elements are types
|
186 |
1402
|
aaronmk
|
|
187 |
512
|
aaronmk
|
for row in reader:
|
188 |
|
|
in_, out = row[:2]
|
189 |
2029
|
aaronmk
|
if out != '': mappings.append([in_, out_root+out])
|
190 |
1402
|
aaronmk
|
|
191 |
512
|
aaronmk
|
stream.close()
|
192 |
|
|
|
193 |
|
|
root.ownerDocument.documentElement.tagName = out_label
|
194 |
|
|
in_is_xml = in_is_xpaths and not in_is_db
|
195 |
751
|
aaronmk
|
out_is_xml_ref[0] = out_is_xpaths and not out_is_db
|
196 |
56
|
aaronmk
|
|
197 |
1897
|
aaronmk
|
def process_rows(process_row, rows, rows_start=0):
|
198 |
|
|
'''Processes input rows
|
199 |
838
|
aaronmk
|
@param process_row(in_row, i)
|
200 |
1945
|
aaronmk
|
@rows_start The (0-based) row # of the first row in rows. Set this
|
201 |
|
|
only if the pre-start rows have already been skipped.
|
202 |
297
|
aaronmk
|
'''
|
203 |
1897
|
aaronmk
|
rows = iter(rows)
|
204 |
|
|
|
205 |
|
|
if end != None: row_nums = xrange(rows_start, end)
|
206 |
|
|
else: row_nums = itertools.count(rows_start)
|
207 |
2038
|
aaronmk
|
i = -1
|
208 |
1897
|
aaronmk
|
for i in row_nums:
|
209 |
1718
|
aaronmk
|
try: row = rows.next()
|
210 |
2038
|
aaronmk
|
except StopIteration:
|
211 |
|
|
i -= 1 # last row # didn't count
|
212 |
|
|
break # no more rows
|
213 |
1718
|
aaronmk
|
if i < start: continue # not at start row yet
|
214 |
|
|
|
215 |
838
|
aaronmk
|
process_row(row, i)
|
216 |
|
|
row_ready(i, row)
|
217 |
2033
|
aaronmk
|
row_ct = i-start+1
|
218 |
982
|
aaronmk
|
return row_ct
|
219 |
838
|
aaronmk
|
|
220 |
1898
|
aaronmk
|
def map_rows(get_value, rows, **kw_args):
|
221 |
838
|
aaronmk
|
'''Maps input rows
|
222 |
|
|
@param get_value(in_, row):str
|
223 |
|
|
'''
|
224 |
2030
|
aaronmk
|
# Prevent collisions if multiple inputs mapping to same output
|
225 |
|
|
outputs_idxs = dict()
|
226 |
|
|
for i, mapping in enumerate(mappings):
|
227 |
|
|
in_, out = mapping
|
228 |
|
|
default = util.NamedTuple(count=1, first=i)
|
229 |
|
|
idxs = outputs_idxs.setdefault(out, default)
|
230 |
|
|
if idxs is not default: # key existed, so there was a collision
|
231 |
|
|
if idxs.count == 1: # first key does not yet have /_alt/#
|
232 |
|
|
mappings[idxs.first][1] += '/_alt/0'
|
233 |
|
|
mappings[i][1] += '/_alt/'+str(idxs.count)
|
234 |
|
|
idxs.count += 1
|
235 |
|
|
|
236 |
2026
|
aaronmk
|
id_node = None
|
237 |
|
|
if out_is_db:
|
238 |
|
|
for i, mapping in enumerate(mappings):
|
239 |
|
|
in_, out = mapping
|
240 |
|
|
# All put_obj()s should return the same id_node
|
241 |
|
|
nodes, id_node = xpath.put_obj(root, out, '-1', has_types,
|
242 |
|
|
'$'+str(in_)) # value is placeholder that documents name
|
243 |
2032
|
aaronmk
|
mappings[i] = [in_, nodes]
|
244 |
|
|
assert id_node != None
|
245 |
2026
|
aaronmk
|
|
246 |
2119
|
aaronmk
|
if debug: # only calc if debug
|
247 |
2026
|
aaronmk
|
log_debug('Put template:\n'+str(root))
|
248 |
|
|
|
249 |
838
|
aaronmk
|
def process_row(row, i):
|
250 |
316
|
aaronmk
|
row_id = str(i)
|
251 |
2032
|
aaronmk
|
if id_node != None: xml_dom.set_value(id_node, row_id)
|
252 |
316
|
aaronmk
|
for in_, out in mappings:
|
253 |
2027
|
aaronmk
|
log_debug('Getting '+str(in_))
|
254 |
316
|
aaronmk
|
value = metadata_value(in_)
|
255 |
2027
|
aaronmk
|
if value == None: value = cleanup(get_value(in_, row))
|
256 |
|
|
log_debug('Putting '+repr(value)+' to '+str(out))
|
257 |
2032
|
aaronmk
|
if out_is_db: # out is list of XML nodes
|
258 |
|
|
for node in out: xml_dom.set_value(node, value)
|
259 |
|
|
elif value != None: # out is XPath
|
260 |
1360
|
aaronmk
|
xpath.put_obj(root, out, row_id, has_types, value)
|
261 |
1898
|
aaronmk
|
return process_rows(process_row, rows, **kw_args)
|
262 |
297
|
aaronmk
|
|
263 |
1898
|
aaronmk
|
def map_table(col_names, rows, **kw_args):
|
264 |
1416
|
aaronmk
|
col_names_ct = len(col_names)
|
265 |
1403
|
aaronmk
|
col_idxs = util.list_flip(col_names)
|
266 |
|
|
|
267 |
2029
|
aaronmk
|
# Resolve prefixes
|
268 |
2025
|
aaronmk
|
mappings_orig = mappings[:] # save a copy
|
269 |
|
|
mappings[:] = [] # empty existing elements
|
270 |
|
|
for in_, out in mappings_orig:
|
271 |
1403
|
aaronmk
|
if metadata_value(in_) == None:
|
272 |
2040
|
aaronmk
|
try: cols = get_with_prefix(col_idxs, prefixes, in_)
|
273 |
2025
|
aaronmk
|
except KeyError: pass
|
274 |
2040
|
aaronmk
|
else: mappings[len(mappings):] = [[db_xml.ColRef(*col), out]
|
275 |
|
|
for col in cols] # can't use += because that uses =
|
276 |
1403
|
aaronmk
|
|
277 |
2040
|
aaronmk
|
def get_value(in_, row): return row.list[in_.idx]
|
278 |
1416
|
aaronmk
|
def wrap_row(row):
|
279 |
|
|
return util.ListDict(util.list_as_length(row, col_names_ct),
|
280 |
|
|
col_names, col_idxs) # handle CSV rows of different lengths
|
281 |
1403
|
aaronmk
|
|
282 |
1898
|
aaronmk
|
return map_rows(get_value, util.WrapIter(wrap_row, rows), **kw_args)
|
283 |
1403
|
aaronmk
|
|
284 |
1758
|
aaronmk
|
stdin = streams.LineCountStream(sys.stdin)
|
285 |
|
|
def on_error(e):
|
286 |
|
|
exc.add_msg(e, term.emph('input line #:')+' '+str(stdin.line_num))
|
287 |
|
|
ex_tracker.track(e)
|
288 |
|
|
|
289 |
1700
|
aaronmk
|
if in_is_db:
|
290 |
1982
|
aaronmk
|
in_db = connect_db(in_db_config)
|
291 |
126
|
aaronmk
|
|
292 |
1982
|
aaronmk
|
# Get table and schema name
|
293 |
|
|
schema = in_schema # modified, so can't have same name as outer var
|
294 |
|
|
table = in_table # modified, so can't have same name as outer var
|
295 |
|
|
if table == None:
|
296 |
|
|
assert in_is_xpaths
|
297 |
|
|
schema, sep, table = in_root.partition('.')
|
298 |
|
|
if sep == '': # only the table name was specified
|
299 |
|
|
table = schema
|
300 |
|
|
schema = None
|
301 |
2313
|
aaronmk
|
table = sql_gen.Table(table, schema)
|
302 |
1982
|
aaronmk
|
|
303 |
1991
|
aaronmk
|
# Fetch rows
|
304 |
|
|
if by_col: limit = 0 # only fetch column names
|
305 |
|
|
else: limit = n
|
306 |
2313
|
aaronmk
|
cur = sql.select(in_db, table, limit=limit, start=start,
|
307 |
|
|
cacheable=False)
|
308 |
1991
|
aaronmk
|
col_names = list(sql.col_names(cur))
|
309 |
|
|
|
310 |
1989
|
aaronmk
|
if by_col:
|
311 |
2042
|
aaronmk
|
map_table(col_names, []) # just create the template
|
312 |
2435
|
aaronmk
|
xml_func.strip(root, ['_simplifyPath'])
|
313 |
2103
|
aaronmk
|
if debug: log_debug('Putting stripped:\n'+str(root))
|
314 |
2119
|
aaronmk
|
# only calc if debug
|
315 |
2422
|
aaronmk
|
in_row_ct_ref = [0]
|
316 |
2417
|
aaronmk
|
db_xml.put_table(in_db, root.firstChild, table, commit,
|
317 |
2422
|
aaronmk
|
in_row_ct_ref, row_ins_ct_ref, n, start)
|
318 |
|
|
row_ct = in_row_ct_ref[0]
|
319 |
1984
|
aaronmk
|
else:
|
320 |
|
|
# Use normal by-row method
|
321 |
1991
|
aaronmk
|
row_ct = map_table(col_names, sql.rows(cur), rows_start=start)
|
322 |
|
|
# rows_start: pre-start rows have been skipped
|
323 |
1136
|
aaronmk
|
|
324 |
1849
|
aaronmk
|
in_db.db.close()
|
325 |
161
|
aaronmk
|
elif in_is_xml:
|
326 |
1715
|
aaronmk
|
def get_rows(doc2rows):
|
327 |
1758
|
aaronmk
|
return iters.flatten(itertools.imap(doc2rows,
|
328 |
|
|
xml_parse.docs_iter(stdin, on_error)))
|
329 |
1715
|
aaronmk
|
|
330 |
1714
|
aaronmk
|
if map_path == None:
|
331 |
1715
|
aaronmk
|
def doc2rows(in_xml_root):
|
332 |
1701
|
aaronmk
|
iter_ = xml_dom.NodeElemIter(in_xml_root)
|
333 |
|
|
util.skip(iter_, xml_dom.is_text) # skip metadata
|
334 |
1715
|
aaronmk
|
return iter_
|
335 |
|
|
|
336 |
|
|
row_ct = process_rows(lambda row, i: root.appendChild(row),
|
337 |
|
|
get_rows(doc2rows))
|
338 |
1714
|
aaronmk
|
else:
|
339 |
1715
|
aaronmk
|
def doc2rows(in_xml_root):
|
340 |
1701
|
aaronmk
|
rows = xpath.get(in_xml_root, in_root, limit=end)
|
341 |
1714
|
aaronmk
|
if rows == []: raise SystemExit('Map error: Root "'
|
342 |
|
|
+in_root+'" not found in input')
|
343 |
|
|
return rows
|
344 |
|
|
|
345 |
|
|
def get_value(in_, row):
|
346 |
|
|
in_ = './{'+(','.join(strings.with_prefixes(
|
347 |
|
|
['']+prefixes, in_)))+'}' # also with no prefix
|
348 |
|
|
nodes = xpath.get(row, in_, allow_rooted=False)
|
349 |
|
|
if nodes != []: return xml_dom.value(nodes[0])
|
350 |
|
|
else: return None
|
351 |
|
|
|
352 |
1715
|
aaronmk
|
row_ct = map_rows(get_value, get_rows(doc2rows))
|
353 |
56
|
aaronmk
|
else: # input is CSV
|
354 |
133
|
aaronmk
|
map_ = dict(mappings)
|
355 |
1389
|
aaronmk
|
reader, col_names = csvs.reader_and_header(sys.stdin)
|
356 |
1403
|
aaronmk
|
row_ct = map_table(col_names, reader)
|
357 |
982
|
aaronmk
|
|
358 |
|
|
return row_ct
|
359 |
53
|
aaronmk
|
|
360 |
838
|
aaronmk
|
def process_inputs(root, row_ready):
|
361 |
982
|
aaronmk
|
row_ct = 0
|
362 |
|
|
for map_path in map_paths:
|
363 |
|
|
row_ct += process_input(root, row_ready, map_path)
|
364 |
|
|
return row_ct
|
365 |
512
|
aaronmk
|
|
366 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
367 |
130
|
aaronmk
|
if out_is_db:
|
368 |
646
|
aaronmk
|
out_db = connect_db(out_db_config)
|
369 |
53
|
aaronmk
|
try:
|
370 |
947
|
aaronmk
|
if redo: sql.empty_db(out_db)
|
371 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
372 |
449
|
aaronmk
|
|
373 |
838
|
aaronmk
|
def row_ready(row_num, input_row):
|
374 |
2119
|
aaronmk
|
row_str_ = [None]
|
375 |
|
|
def row_str():
|
376 |
|
|
if row_str_[0] == None:
|
377 |
|
|
# Row # is interally 0-based, but 1-based to the user
|
378 |
|
|
row_str_[0] = (term.emph('row #:')+' '+str(row_num+1)
|
379 |
|
|
+'\n'+term.emph('input row:')+'\n'+str(input_row))
|
380 |
|
|
if verbose_errors: row_str_[0] += ('\n'
|
381 |
|
|
+term.emph('output row:')+'\n'+str(root))
|
382 |
|
|
return row_str_[0]
|
383 |
|
|
|
384 |
|
|
if debug: log_debug(row_str()) # only calc if debug
|
385 |
|
|
|
386 |
452
|
aaronmk
|
def on_error(e):
|
387 |
2119
|
aaronmk
|
exc.add_msg(e, row_str())
|
388 |
2046
|
aaronmk
|
ex_tracker.track(e, row_num, detail=verbose_errors)
|
389 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
390 |
452
|
aaronmk
|
|
391 |
2032
|
aaronmk
|
row_root = root.cloneNode(True) # deep copy so don't modify root
|
392 |
2106
|
aaronmk
|
xml_func.process(row_root, on_error, out_db)
|
393 |
2032
|
aaronmk
|
if not xml_dom.is_empty(row_root):
|
394 |
|
|
assert xml_dom.has_one_child(row_root)
|
395 |
442
|
aaronmk
|
try:
|
396 |
982
|
aaronmk
|
sql.with_savepoint(out_db,
|
397 |
2032
|
aaronmk
|
lambda: db_xml.put(out_db, row_root.firstChild,
|
398 |
1850
|
aaronmk
|
row_ins_ct_ref, on_error))
|
399 |
1849
|
aaronmk
|
if commit: out_db.db.commit()
|
400 |
449
|
aaronmk
|
except sql.DatabaseErrors, e: on_error(e)
|
401 |
|
|
|
402 |
982
|
aaronmk
|
row_ct = process_inputs(root, row_ready)
|
403 |
|
|
sys.stdout.write('Inserted '+str(row_ins_ct_ref[0])+
|
404 |
460
|
aaronmk
|
' new rows into database\n')
|
405 |
1868
|
aaronmk
|
|
406 |
|
|
# Consume asynchronous tasks
|
407 |
|
|
pool.main_loop()
|
408 |
53
|
aaronmk
|
finally:
|
409 |
2166
|
aaronmk
|
if out_db.connected():
|
410 |
|
|
out_db.db.rollback()
|
411 |
|
|
out_db.db.close()
|
412 |
751
|
aaronmk
|
else:
|
413 |
759
|
aaronmk
|
def on_error(e): ex_tracker.track(e)
|
414 |
838
|
aaronmk
|
def row_ready(row_num, input_row): pass
|
415 |
982
|
aaronmk
|
row_ct = process_inputs(root, row_ready)
|
416 |
759
|
aaronmk
|
xml_func.process(root, on_error)
|
417 |
751
|
aaronmk
|
if out_is_xml_ref[0]:
|
418 |
|
|
doc.writexml(sys.stdout, **xml_dom.prettyxml_config)
|
419 |
|
|
else: # output is CSV
|
420 |
|
|
raise NotImplementedError('CSV output not supported yet')
|
421 |
985
|
aaronmk
|
|
422 |
1868
|
aaronmk
|
# Consume any asynchronous tasks not already consumed above
|
423 |
1862
|
aaronmk
|
pool.main_loop()
|
424 |
|
|
|
425 |
982
|
aaronmk
|
profiler.stop(row_ct)
|
426 |
|
|
ex_tracker.add_iters(row_ct)
|
427 |
2439
|
aaronmk
|
log('Processed '+str(row_ct)+' input rows')
|
428 |
|
|
log(profiler.msg())
|
429 |
|
|
log(ex_tracker.msg())
|
430 |
985
|
aaronmk
|
ex_tracker.exit()
|
431 |
53
|
aaronmk
|
|
432 |
847
|
aaronmk
|
def main():
|
433 |
|
|
try: main_()
|
434 |
1719
|
aaronmk
|
except Parser.SyntaxError, e: raise SystemExit(str(e))
|
435 |
847
|
aaronmk
|
|
436 |
846
|
aaronmk
|
if __name__ == '__main__':
|
437 |
847
|
aaronmk
|
profile_to = opts.get_env_var('profile_to', None)
|
438 |
|
|
if profile_to != None:
|
439 |
|
|
import cProfile
|
440 |
1584
|
aaronmk
|
sys.stderr.write('Profiling to '+profile_to+'\n')
|
441 |
847
|
aaronmk
|
cProfile.run(main.func_code, profile_to)
|
442 |
|
|
else: main()
|