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aaronmk
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#!/usr/bin/env python
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# Maps one datasource to another, using a map spreadsheet if needed
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986
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aaronmk
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# Exit status is the # of errors in the import, up to the maximum exit status
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53
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aaronmk
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# For outputting an XML file to a PostgreSQL database, use the general format of
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# http://vegbank.org/vegdocs/xml/vegbank_example_ver1.0.2.xml
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2550
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aaronmk
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import copy
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1014
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aaronmk
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import csv
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1714
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aaronmk
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import itertools
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53
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import os.path
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3577
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import warnings
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53
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import sys
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299
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import xml.dom.minidom as minidom
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53
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266
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sys.path.append(os.path.dirname(__file__)+"/../lib")
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53
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aaronmk
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1389
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import csvs
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2040
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import db_xml
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344
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import exc
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1714
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import iters
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1705
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aaronmk
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import maps
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64
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import opts
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2035
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import parallelproc
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281
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import Parser
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982
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import profiling
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131
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import sql
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2288
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import sql_gen
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3103
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import sql_io
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1758
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import streams
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715
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aaronmk
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import strings
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828
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import term
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310
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import util
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1014
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import xpath
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133
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import xml_dom
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86
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import xml_func
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1713
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import xml_parse
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53
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1404
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def get_with_prefix(map_, prefixes, key):
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2040
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aaronmk
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'''Gets all entries for the given key with any of the given prefixes
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@return tuple(found_key, found_value)
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'''
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1484
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aaronmk
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values = []
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1681
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for key_ in strings.with_prefixes(['']+prefixes, key): # also with no prefix
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try: value = map_[key_]
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1484
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aaronmk
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except KeyError, e: continue # keep going
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2040
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values.append((key_, value))
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1484
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if values != []: return values
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else: raise e # re-raise last KeyError
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1404
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aaronmk
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1018
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def metadata_value(name): return None # this feature has been removed
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84
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1360
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def cleanup(val):
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if val == None: return val
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1374
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return util.none_if(strings.cleanup(strings.ustr(val)), u'', u'\\N')
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1360
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847
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def main_():
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131
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env_names = []
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def usage_err():
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raise SystemExit('Usage: '+opts.env_usage(env_names, True)+' '
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1945
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aaronmk
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+sys.argv[0]+' [map_path...] [<input] [>output]\n'
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1946
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'Note: Row #s start with 1')
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838
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aaronmk
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1570
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## Get config from env vars
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838
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1570
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aaronmk
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# Modes
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946
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test = opts.env_flag('test', False, env_names)
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947
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commit = opts.env_flag('commit', False, env_names) and not test
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944
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aaronmk
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# never commit in test mode
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947
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redo = opts.env_flag('redo', test, env_names) and not commit
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2977
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# never redo in commit mode (run `make schemas/reinstall` instead)
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1570
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aaronmk
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# Ranges
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1946
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start = util.cast(int, opts.get_env_var('start', 1, env_names)) # 1-based
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# Make start interally 0-based.
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# It's 1-based to the user to match up with the staging table row #s.
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start -= 1
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1945
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aaronmk
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if test: n_default = 1
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else: n_default = None
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n = util.cast(int, util.none_if(opts.get_env_var('n', n_default, env_names),
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u''))
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end = n
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1570
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aaronmk
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if end != None: end += start
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# Debugging
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3132
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verbosity = util.cast(float, opts.get_env_var('verbosity', None, env_names))
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944
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aaronmk
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opts.get_env_var('profile_to', None, env_names) # add to env_names
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131
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1570
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aaronmk
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# DB
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def get_db_config(prefix):
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1926
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aaronmk
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return opts.get_env_vars(sql.db_config_names, prefix, env_names)
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1570
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aaronmk
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in_db_config = get_db_config('in')
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out_db_config = get_db_config('out')
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in_is_db = 'engine' in in_db_config
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out_is_db = 'engine' in out_db_config
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1982
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aaronmk
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in_schema = opts.get_env_var('in_schema', None, env_names)
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in_table = opts.get_env_var('in_table', None, env_names)
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3339
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if in_schema != None:
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for config in [in_db_config, out_db_config]:
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config['schemas'] += ','+in_schema
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1570
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aaronmk
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102 |
1989
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aaronmk
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# Optimization
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2050
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aaronmk
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cache_sql = opts.env_flag('cache_sql', True, env_names)
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1989
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aaronmk
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by_col = in_db_config == out_db_config and opts.env_flag('by_col', False,
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env_names) # by-column optimization only applies if mapping to same DB
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if test: cpus_default = 0
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2044
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aaronmk
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else: cpus_default = 0 # or None to use parallel processing by default
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1989
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aaronmk
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cpus = util.cast(int, util.none_if(opts.get_env_var('cpus', cpus_default,
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env_names), u''))
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110 |
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3132
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aaronmk
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# Set default verbosity. Must happen after by_col is set.
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if verbosity == None:
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if test: verbosity = 0.5 # automated tests should not be verbose
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elif by_col: verbosity = 3 # show all queries to assist profiling
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else: verbosity = 1.1 # just show row progress
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1570
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aaronmk
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##
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118 |
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119 |
838
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aaronmk
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# Logging
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120 |
2457
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aaronmk
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verbose_errors = test and verbosity > 0
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121 |
3243
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aaronmk
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debug = verbosity >= 1.5
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122 |
2439
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aaronmk
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def log(msg, level=1):
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'''Higher level -> more verbose'''
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124 |
2452
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aaronmk
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if level <= verbosity:
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2490
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aaronmk
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if verbosity <= 2:
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if level == 1.5: msg = '# '+msg # msg is Redmine list item
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127 |
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elif msg.startswith('DB query:'): # remove extra debug info
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first_line, nl, msg = msg.partition('\n')
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elif level > 1: msg = '['+str(level)+'] '+msg # include level in msg
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130 |
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131 |
2883
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aaronmk
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sys.stderr.write(strings.to_raw_str(msg.rstrip('\n')+'\n'))
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132 |
2439
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aaronmk
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if debug: log_debug = lambda msg, level=2: log(msg, level)
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133 |
1901
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aaronmk
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else: log_debug = sql.log_debug_none
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134 |
662
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aaronmk
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|
135 |
53
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aaronmk
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# Parse args
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136 |
510
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aaronmk
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map_paths = sys.argv[1:]
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137 |
512
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aaronmk
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if map_paths == []:
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138 |
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if in_is_db or not out_is_db: usage_err()
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139 |
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else: map_paths = [None]
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140 |
53
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aaronmk
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141 |
646
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aaronmk
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def connect_db(db_config):
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142 |
1901
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aaronmk
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log('Connecting to '+sql.db_config_str(db_config))
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143 |
2920
|
aaronmk
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return sql.connect(db_config, caching=cache_sql, autocommit=commit,
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144 |
2916
|
aaronmk
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debug_temp=verbosity > 3 and commit, log_debug=log_debug)
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145 |
646
|
aaronmk
|
|
146 |
1945
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aaronmk
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if end != None: end_str = str(end-1) # end is one past the last #
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147 |
1573
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aaronmk
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else: end_str = 'end'
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148 |
1901
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aaronmk
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log('Processing input rows '+str(start)+'-'+end_str)
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149 |
1573
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aaronmk
|
|
150 |
1014
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aaronmk
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ex_tracker = exc.ExPercentTracker(iter_text='row')
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151 |
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profiler = profiling.ItersProfiler(start_now=True, iter_text='row')
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152 |
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|
153 |
1856
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aaronmk
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# Parallel processing
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154 |
2035
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aaronmk
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pool = parallelproc.MultiProducerPool(cpus)
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155 |
1901
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aaronmk
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log('Using '+str(pool.process_ct)+' parallel CPUs')
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156 |
1846
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aaronmk
|
|
157 |
1014
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aaronmk
|
doc = xml_dom.create_doc()
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158 |
|
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root = doc.documentElement
|
159 |
751
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aaronmk
|
out_is_xml_ref = [False]
|
160 |
1014
|
aaronmk
|
in_label_ref = [None]
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161 |
|
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def update_in_label():
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162 |
|
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if in_label_ref[0] != None:
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163 |
|
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xpath.get(root, '/_ignore/inLabel="'+in_label_ref[0]+'"', True)
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164 |
|
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def prep_root():
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165 |
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root.clear()
|
166 |
|
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update_in_label()
|
167 |
|
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prep_root()
|
168 |
751
|
aaronmk
|
|
169 |
1991
|
aaronmk
|
# Define before the out_is_db section because it's used by by_col
|
170 |
|
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row_ins_ct_ref = [0]
|
171 |
|
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|
172 |
2601
|
aaronmk
|
if out_is_db:
|
173 |
|
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out_db = connect_db(out_db_config)
|
174 |
2602
|
aaronmk
|
rel_funcs = set(sql.tables(out_db, schema_like='%',
|
175 |
2601
|
aaronmk
|
table_like=r'\__%'))
|
176 |
|
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|
177 |
838
|
aaronmk
|
def process_input(root, row_ready, map_path):
|
178 |
512
|
aaronmk
|
'''Inputs datasource to XML tree, mapping if needed'''
|
179 |
|
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# Load map header
|
180 |
|
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in_is_xpaths = True
|
181 |
751
|
aaronmk
|
out_is_xpaths = True
|
182 |
512
|
aaronmk
|
out_label = None
|
183 |
|
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if map_path != None:
|
184 |
|
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metadata = []
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185 |
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mappings = []
|
186 |
|
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stream = open(map_path, 'rb')
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187 |
|
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reader = csv.reader(stream)
|
188 |
|
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in_label, out_label = reader.next()[:2]
|
189 |
1402
|
aaronmk
|
|
190 |
512
|
aaronmk
|
def split_col_name(name):
|
191 |
1402
|
aaronmk
|
label, sep, root = name.partition(':')
|
192 |
|
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label, sep2, prefixes_str = label.partition('[')
|
193 |
|
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prefixes_str = strings.remove_suffix(']', prefixes_str)
|
194 |
|
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prefixes = strings.split(',', prefixes_str)
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195 |
|
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return label, sep != '', root, prefixes
|
196 |
1198
|
aaronmk
|
# extract datasrc from "datasrc[data_format]"
|
197 |
1402
|
aaronmk
|
|
198 |
1705
|
aaronmk
|
in_label, in_root, prefixes = maps.col_info(in_label)
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199 |
|
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in_is_xpaths = in_root != None
|
200 |
1014
|
aaronmk
|
in_label_ref[0] = in_label
|
201 |
|
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update_in_label()
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202 |
1705
|
aaronmk
|
out_label, out_root = maps.col_info(out_label)[:2]
|
203 |
|
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out_is_xpaths = out_root != None
|
204 |
1841
|
aaronmk
|
if out_is_xpaths: has_types = out_root.find('/*s/') >= 0
|
205 |
1705
|
aaronmk
|
# outer elements are types
|
206 |
1402
|
aaronmk
|
|
207 |
512
|
aaronmk
|
for row in reader:
|
208 |
|
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in_, out = row[:2]
|
209 |
2029
|
aaronmk
|
if out != '': mappings.append([in_, out_root+out])
|
210 |
1402
|
aaronmk
|
|
211 |
512
|
aaronmk
|
stream.close()
|
212 |
|
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|
213 |
|
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root.ownerDocument.documentElement.tagName = out_label
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214 |
|
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in_is_xml = in_is_xpaths and not in_is_db
|
215 |
751
|
aaronmk
|
out_is_xml_ref[0] = out_is_xpaths and not out_is_db
|
216 |
56
|
aaronmk
|
|
217 |
1897
|
aaronmk
|
def process_rows(process_row, rows, rows_start=0):
|
218 |
|
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'''Processes input rows
|
219 |
838
|
aaronmk
|
@param process_row(in_row, i)
|
220 |
1945
|
aaronmk
|
@rows_start The (0-based) row # of the first row in rows. Set this
|
221 |
|
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only if the pre-start rows have already been skipped.
|
222 |
297
|
aaronmk
|
'''
|
223 |
1897
|
aaronmk
|
rows = iter(rows)
|
224 |
|
|
|
225 |
|
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if end != None: row_nums = xrange(rows_start, end)
|
226 |
|
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else: row_nums = itertools.count(rows_start)
|
227 |
2038
|
aaronmk
|
i = -1
|
228 |
1897
|
aaronmk
|
for i in row_nums:
|
229 |
1718
|
aaronmk
|
try: row = rows.next()
|
230 |
2038
|
aaronmk
|
except StopIteration:
|
231 |
|
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i -= 1 # last row # didn't count
|
232 |
|
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break # no more rows
|
233 |
1718
|
aaronmk
|
if i < start: continue # not at start row yet
|
234 |
|
|
|
235 |
2881
|
aaronmk
|
# Row # is interally 0-based, but 1-based to the user
|
236 |
|
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log('Processing input row #'+str(i+1), level=1.1)
|
237 |
838
|
aaronmk
|
process_row(row, i)
|
238 |
|
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row_ready(i, row)
|
239 |
2033
|
aaronmk
|
row_ct = i-start+1
|
240 |
982
|
aaronmk
|
return row_ct
|
241 |
838
|
aaronmk
|
|
242 |
1898
|
aaronmk
|
def map_rows(get_value, rows, **kw_args):
|
243 |
838
|
aaronmk
|
'''Maps input rows
|
244 |
|
|
@param get_value(in_, row):str
|
245 |
|
|
'''
|
246 |
2030
|
aaronmk
|
# Prevent collisions if multiple inputs mapping to same output
|
247 |
|
|
outputs_idxs = dict()
|
248 |
|
|
for i, mapping in enumerate(mappings):
|
249 |
|
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in_, out = mapping
|
250 |
|
|
default = util.NamedTuple(count=1, first=i)
|
251 |
|
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idxs = outputs_idxs.setdefault(out, default)
|
252 |
|
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if idxs is not default: # key existed, so there was a collision
|
253 |
|
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if idxs.count == 1: # first key does not yet have /_alt/#
|
254 |
|
|
mappings[idxs.first][1] += '/_alt/0'
|
255 |
|
|
mappings[i][1] += '/_alt/'+str(idxs.count)
|
256 |
|
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idxs.count += 1
|
257 |
|
|
|
258 |
2026
|
aaronmk
|
id_node = None
|
259 |
|
|
if out_is_db:
|
260 |
|
|
for i, mapping in enumerate(mappings):
|
261 |
|
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in_, out = mapping
|
262 |
|
|
# All put_obj()s should return the same id_node
|
263 |
|
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nodes, id_node = xpath.put_obj(root, out, '-1', has_types,
|
264 |
|
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'$'+str(in_)) # value is placeholder that documents name
|
265 |
2032
|
aaronmk
|
mappings[i] = [in_, nodes]
|
266 |
|
|
assert id_node != None
|
267 |
2026
|
aaronmk
|
|
268 |
2119
|
aaronmk
|
if debug: # only calc if debug
|
269 |
2026
|
aaronmk
|
log_debug('Put template:\n'+str(root))
|
270 |
|
|
|
271 |
838
|
aaronmk
|
def process_row(row, i):
|
272 |
316
|
aaronmk
|
row_id = str(i)
|
273 |
2032
|
aaronmk
|
if id_node != None: xml_dom.set_value(id_node, row_id)
|
274 |
316
|
aaronmk
|
for in_, out in mappings:
|
275 |
2027
|
aaronmk
|
log_debug('Getting '+str(in_))
|
276 |
316
|
aaronmk
|
value = metadata_value(in_)
|
277 |
2027
|
aaronmk
|
if value == None: value = cleanup(get_value(in_, row))
|
278 |
|
|
log_debug('Putting '+repr(value)+' to '+str(out))
|
279 |
2032
|
aaronmk
|
if out_is_db: # out is list of XML nodes
|
280 |
|
|
for node in out: xml_dom.set_value(node, value)
|
281 |
|
|
elif value != None: # out is XPath
|
282 |
1360
|
aaronmk
|
xpath.put_obj(root, out, row_id, has_types, value)
|
283 |
1898
|
aaronmk
|
return process_rows(process_row, rows, **kw_args)
|
284 |
297
|
aaronmk
|
|
285 |
1898
|
aaronmk
|
def map_table(col_names, rows, **kw_args):
|
286 |
1416
|
aaronmk
|
col_names_ct = len(col_names)
|
287 |
1403
|
aaronmk
|
col_idxs = util.list_flip(col_names)
|
288 |
|
|
|
289 |
2029
|
aaronmk
|
# Resolve prefixes
|
290 |
2025
|
aaronmk
|
mappings_orig = mappings[:] # save a copy
|
291 |
|
|
mappings[:] = [] # empty existing elements
|
292 |
|
|
for in_, out in mappings_orig:
|
293 |
1403
|
aaronmk
|
if metadata_value(in_) == None:
|
294 |
2040
|
aaronmk
|
try: cols = get_with_prefix(col_idxs, prefixes, in_)
|
295 |
2025
|
aaronmk
|
except KeyError: pass
|
296 |
2040
|
aaronmk
|
else: mappings[len(mappings):] = [[db_xml.ColRef(*col), out]
|
297 |
|
|
for col in cols] # can't use += because that uses =
|
298 |
1403
|
aaronmk
|
|
299 |
2040
|
aaronmk
|
def get_value(in_, row): return row.list[in_.idx]
|
300 |
1416
|
aaronmk
|
def wrap_row(row):
|
301 |
|
|
return util.ListDict(util.list_as_length(row, col_names_ct),
|
302 |
|
|
col_names, col_idxs) # handle CSV rows of different lengths
|
303 |
1403
|
aaronmk
|
|
304 |
1898
|
aaronmk
|
return map_rows(get_value, util.WrapIter(wrap_row, rows), **kw_args)
|
305 |
1403
|
aaronmk
|
|
306 |
1700
|
aaronmk
|
if in_is_db:
|
307 |
2809
|
aaronmk
|
def on_error(e): ex_tracker.track(e)
|
308 |
|
|
|
309 |
3186
|
aaronmk
|
if by_col: in_db = out_db
|
310 |
|
|
else: in_db = connect_db(in_db_config)
|
311 |
126
|
aaronmk
|
|
312 |
1982
|
aaronmk
|
# Get table and schema name
|
313 |
|
|
schema = in_schema # modified, so can't have same name as outer var
|
314 |
|
|
table = in_table # modified, so can't have same name as outer var
|
315 |
|
|
if table == None:
|
316 |
|
|
assert in_is_xpaths
|
317 |
|
|
schema, sep, table = in_root.partition('.')
|
318 |
|
|
if sep == '': # only the table name was specified
|
319 |
|
|
table = schema
|
320 |
|
|
schema = None
|
321 |
2313
|
aaronmk
|
table = sql_gen.Table(table, schema)
|
322 |
1982
|
aaronmk
|
|
323 |
1991
|
aaronmk
|
# Fetch rows
|
324 |
|
|
if by_col: limit = 0 # only fetch column names
|
325 |
|
|
else: limit = n
|
326 |
2313
|
aaronmk
|
cur = sql.select(in_db, table, limit=limit, start=start,
|
327 |
|
|
cacheable=False)
|
328 |
1991
|
aaronmk
|
col_names = list(sql.col_names(cur))
|
329 |
|
|
|
330 |
1989
|
aaronmk
|
if by_col:
|
331 |
2042
|
aaronmk
|
map_table(col_names, []) # just create the template
|
332 |
2550
|
aaronmk
|
|
333 |
2734
|
aaronmk
|
if n == None: # doing full import
|
334 |
|
|
log('Clearing errors table')
|
335 |
3103
|
aaronmk
|
sql.truncate(in_db, sql_io.errors_table(in_db, table))
|
336 |
2734
|
aaronmk
|
|
337 |
2550
|
aaronmk
|
# Strip XML functions not in the DB
|
338 |
3427
|
aaronmk
|
def is_rel_func(name):
|
339 |
|
|
return (name in db_xml.put_table_special_funcs
|
340 |
|
|
or sql.function_exists(in_db, sql_gen.Function(name)))
|
341 |
|
|
xml_func.process(root, is_rel_func=is_rel_func)
|
342 |
2103
|
aaronmk
|
if debug: log_debug('Putting stripped:\n'+str(root))
|
343 |
2119
|
aaronmk
|
# only calc if debug
|
344 |
2550
|
aaronmk
|
|
345 |
|
|
# Import rows
|
346 |
2422
|
aaronmk
|
in_row_ct_ref = [0]
|
347 |
2928
|
aaronmk
|
db_xml.put_table(in_db, root.firstChild, table, in_row_ct_ref,
|
348 |
|
|
row_ins_ct_ref, n, start, on_error)
|
349 |
2422
|
aaronmk
|
row_ct = in_row_ct_ref[0]
|
350 |
1984
|
aaronmk
|
else:
|
351 |
|
|
# Use normal by-row method
|
352 |
1991
|
aaronmk
|
row_ct = map_table(col_names, sql.rows(cur), rows_start=start)
|
353 |
|
|
# rows_start: pre-start rows have been skipped
|
354 |
3186
|
aaronmk
|
|
355 |
|
|
in_db.db.close()
|
356 |
161
|
aaronmk
|
elif in_is_xml:
|
357 |
2809
|
aaronmk
|
stdin = streams.LineCountStream(sys.stdin)
|
358 |
|
|
def on_error(e):
|
359 |
|
|
exc.add_msg(e, term.emph('input line #:')+' '
|
360 |
|
|
+str(stdin.line_num))
|
361 |
|
|
ex_tracker.track(e)
|
362 |
|
|
|
363 |
1715
|
aaronmk
|
def get_rows(doc2rows):
|
364 |
1758
|
aaronmk
|
return iters.flatten(itertools.imap(doc2rows,
|
365 |
|
|
xml_parse.docs_iter(stdin, on_error)))
|
366 |
1715
|
aaronmk
|
|
367 |
1714
|
aaronmk
|
if map_path == None:
|
368 |
1715
|
aaronmk
|
def doc2rows(in_xml_root):
|
369 |
1701
|
aaronmk
|
iter_ = xml_dom.NodeElemIter(in_xml_root)
|
370 |
|
|
util.skip(iter_, xml_dom.is_text) # skip metadata
|
371 |
1715
|
aaronmk
|
return iter_
|
372 |
|
|
|
373 |
|
|
row_ct = process_rows(lambda row, i: root.appendChild(row),
|
374 |
|
|
get_rows(doc2rows))
|
375 |
1714
|
aaronmk
|
else:
|
376 |
1715
|
aaronmk
|
def doc2rows(in_xml_root):
|
377 |
1701
|
aaronmk
|
rows = xpath.get(in_xml_root, in_root, limit=end)
|
378 |
3577
|
aaronmk
|
if rows == []: warnings.warn(UserWarning('Map error: Root "'
|
379 |
|
|
+in_root+'" not found in input'))
|
380 |
1714
|
aaronmk
|
return rows
|
381 |
|
|
|
382 |
|
|
def get_value(in_, row):
|
383 |
|
|
in_ = './{'+(','.join(strings.with_prefixes(
|
384 |
|
|
['']+prefixes, in_)))+'}' # also with no prefix
|
385 |
|
|
nodes = xpath.get(row, in_, allow_rooted=False)
|
386 |
|
|
if nodes != []: return xml_dom.value(nodes[0])
|
387 |
|
|
else: return None
|
388 |
|
|
|
389 |
1715
|
aaronmk
|
row_ct = map_rows(get_value, get_rows(doc2rows))
|
390 |
56
|
aaronmk
|
else: # input is CSV
|
391 |
133
|
aaronmk
|
map_ = dict(mappings)
|
392 |
1389
|
aaronmk
|
reader, col_names = csvs.reader_and_header(sys.stdin)
|
393 |
1403
|
aaronmk
|
row_ct = map_table(col_names, reader)
|
394 |
982
|
aaronmk
|
|
395 |
|
|
return row_ct
|
396 |
53
|
aaronmk
|
|
397 |
838
|
aaronmk
|
def process_inputs(root, row_ready):
|
398 |
982
|
aaronmk
|
row_ct = 0
|
399 |
|
|
for map_path in map_paths:
|
400 |
|
|
row_ct += process_input(root, row_ready, map_path)
|
401 |
|
|
return row_ct
|
402 |
512
|
aaronmk
|
|
403 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
404 |
130
|
aaronmk
|
if out_is_db:
|
405 |
53
|
aaronmk
|
try:
|
406 |
947
|
aaronmk
|
if redo: sql.empty_db(out_db)
|
407 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
408 |
449
|
aaronmk
|
|
409 |
838
|
aaronmk
|
def row_ready(row_num, input_row):
|
410 |
2119
|
aaronmk
|
row_str_ = [None]
|
411 |
|
|
def row_str():
|
412 |
|
|
if row_str_[0] == None:
|
413 |
|
|
# Row # is interally 0-based, but 1-based to the user
|
414 |
|
|
row_str_[0] = (term.emph('row #:')+' '+str(row_num+1)
|
415 |
|
|
+'\n'+term.emph('input row:')+'\n'+str(input_row))
|
416 |
|
|
if verbose_errors: row_str_[0] += ('\n'
|
417 |
|
|
+term.emph('output row:')+'\n'+str(root))
|
418 |
|
|
return row_str_[0]
|
419 |
|
|
|
420 |
|
|
if debug: log_debug(row_str()) # only calc if debug
|
421 |
|
|
|
422 |
452
|
aaronmk
|
def on_error(e):
|
423 |
2119
|
aaronmk
|
exc.add_msg(e, row_str())
|
424 |
2046
|
aaronmk
|
ex_tracker.track(e, row_num, detail=verbose_errors)
|
425 |
1886
|
aaronmk
|
pool.share_vars(locals())
|
426 |
452
|
aaronmk
|
|
427 |
2032
|
aaronmk
|
row_root = root.cloneNode(True) # deep copy so don't modify root
|
428 |
3424
|
aaronmk
|
xml_func.process(row_root, on_error, lambda f: f in rel_funcs,
|
429 |
|
|
out_db)
|
430 |
2032
|
aaronmk
|
if not xml_dom.is_empty(row_root):
|
431 |
|
|
assert xml_dom.has_one_child(row_root)
|
432 |
442
|
aaronmk
|
try:
|
433 |
982
|
aaronmk
|
sql.with_savepoint(out_db,
|
434 |
2032
|
aaronmk
|
lambda: db_xml.put(out_db, row_root.firstChild,
|
435 |
1850
|
aaronmk
|
row_ins_ct_ref, on_error))
|
436 |
449
|
aaronmk
|
except sql.DatabaseErrors, e: on_error(e)
|
437 |
|
|
|
438 |
982
|
aaronmk
|
row_ct = process_inputs(root, row_ready)
|
439 |
|
|
sys.stdout.write('Inserted '+str(row_ins_ct_ref[0])+
|
440 |
460
|
aaronmk
|
' new rows into database\n')
|
441 |
1868
|
aaronmk
|
|
442 |
|
|
# Consume asynchronous tasks
|
443 |
|
|
pool.main_loop()
|
444 |
3117
|
aaronmk
|
finally: out_db.close()
|
445 |
751
|
aaronmk
|
else:
|
446 |
759
|
aaronmk
|
def on_error(e): ex_tracker.track(e)
|
447 |
838
|
aaronmk
|
def row_ready(row_num, input_row): pass
|
448 |
982
|
aaronmk
|
row_ct = process_inputs(root, row_ready)
|
449 |
759
|
aaronmk
|
xml_func.process(root, on_error)
|
450 |
751
|
aaronmk
|
if out_is_xml_ref[0]:
|
451 |
|
|
doc.writexml(sys.stdout, **xml_dom.prettyxml_config)
|
452 |
|
|
else: # output is CSV
|
453 |
|
|
raise NotImplementedError('CSV output not supported yet')
|
454 |
985
|
aaronmk
|
|
455 |
1868
|
aaronmk
|
# Consume any asynchronous tasks not already consumed above
|
456 |
1862
|
aaronmk
|
pool.main_loop()
|
457 |
|
|
|
458 |
982
|
aaronmk
|
profiler.stop(row_ct)
|
459 |
3324
|
aaronmk
|
if not by_col: ex_tracker.add_iters(row_ct) # only if errors are done by row
|
460 |
2439
|
aaronmk
|
log('Processed '+str(row_ct)+' input rows')
|
461 |
|
|
log(profiler.msg())
|
462 |
|
|
log(ex_tracker.msg())
|
463 |
985
|
aaronmk
|
ex_tracker.exit()
|
464 |
53
|
aaronmk
|
|
465 |
847
|
aaronmk
|
def main():
|
466 |
|
|
try: main_()
|
467 |
1719
|
aaronmk
|
except Parser.SyntaxError, e: raise SystemExit(str(e))
|
468 |
847
|
aaronmk
|
|
469 |
846
|
aaronmk
|
if __name__ == '__main__':
|
470 |
847
|
aaronmk
|
profile_to = opts.get_env_var('profile_to', None)
|
471 |
|
|
if profile_to != None:
|
472 |
|
|
import cProfile
|
473 |
1584
|
aaronmk
|
sys.stderr.write('Profiling to '+profile_to+'\n')
|
474 |
847
|
aaronmk
|
cProfile.run(main.func_code, profile_to)
|
475 |
|
|
else: main()
|