Project

General

Profile

1 53 aaronmk
#!/usr/bin/env python
2
# Maps one datasource to another, using a map spreadsheet if needed
3 986 aaronmk
# Exit status is the # of errors in the import, up to the maximum exit status
4 3768 aaronmk
# Multi-safe (supports an input appearing multiple times).
5 53 aaronmk
# For outputting an XML file to a PostgreSQL database, use the general format of
6
# http://vegbank.org/vegdocs/xml/vegbank_example_ver1.0.2.xml
7 4213 aaronmk
# Duplicate-column safe (supports multiple columns of the same name, which will
8
# be combined)
9 53 aaronmk
10 2550 aaronmk
import copy
11 1014 aaronmk
import csv
12 1714 aaronmk
import itertools
13 53 aaronmk
import os.path
14 3577 aaronmk
import warnings
15 53 aaronmk
import sys
16 299 aaronmk
import xml.dom.minidom as minidom
17 53 aaronmk
18 266 aaronmk
sys.path.append(os.path.dirname(__file__)+"/../lib")
19 53 aaronmk
20 1389 aaronmk
import csvs
21 2040 aaronmk
import db_xml
22 344 aaronmk
import exc
23 9455 aaronmk
import ints
24 1714 aaronmk
import iters
25 1705 aaronmk
import maps
26 64 aaronmk
import opts
27 2035 aaronmk
import parallelproc
28 281 aaronmk
import Parser
29 982 aaronmk
import profiling
30 131 aaronmk
import sql
31 2288 aaronmk
import sql_gen
32 3103 aaronmk
import sql_io
33 1758 aaronmk
import streams
34 715 aaronmk
import strings
35 828 aaronmk
import term
36 310 aaronmk
import util
37 1014 aaronmk
import xpath
38 133 aaronmk
import xml_dom
39 86 aaronmk
import xml_func
40 1713 aaronmk
import xml_parse
41 53 aaronmk
42 5911 aaronmk
metadata_prefix = ':'
43 4068 aaronmk
collision_suffix = '/_alt/'
44 4047 aaronmk
45 1404 aaronmk
def get_with_prefix(map_, prefixes, key):
46 2040 aaronmk
    '''Gets all entries for the given key with any of the given prefixes
47
    @return tuple(found_key, found_value)
48
    '''
49 1484 aaronmk
    values = []
50 1681 aaronmk
    for key_ in strings.with_prefixes(['']+prefixes, key): # also with no prefix
51
        try: value = map_[key_]
52 1484 aaronmk
        except KeyError, e: continue # keep going
53 2040 aaronmk
        values.append((key_, value))
54 1484 aaronmk
55
    if values != []: return values
56
    else: raise e # re-raise last KeyError
57 1404 aaronmk
58 5927 aaronmk
def is_metadata(str_): return str_.startswith(metadata_prefix)
59
60 5911 aaronmk
def metadata_value(name):
61
    removed_ref = [False]
62
    name = strings.remove_prefix(metadata_prefix, name, removed_ref)
63
    if removed_ref[0]: return name
64
    else: return None
65 84 aaronmk
66 1360 aaronmk
def cleanup(val):
67
    if val == None: return val
68 1374 aaronmk
    return util.none_if(strings.cleanup(strings.ustr(val)), u'', u'\\N')
69 1360 aaronmk
70 847 aaronmk
def main_():
71 131 aaronmk
    env_names = []
72
    def usage_err():
73 944 aaronmk
        raise SystemExit('Usage: '+opts.env_usage(env_names, True)+' '
74 1945 aaronmk
            +sys.argv[0]+' [map_path...] [<input] [>output]\n'
75 1946 aaronmk
            'Note: Row #s start with 1')
76 838 aaronmk
77 1570 aaronmk
    ## Get config from env vars
78 838 aaronmk
79 1570 aaronmk
    # Modes
80 946 aaronmk
    test = opts.env_flag('test', False, env_names)
81 947 aaronmk
    commit = opts.env_flag('commit', False, env_names) and not test
82 944 aaronmk
        # never commit in test mode
83 7122 aaronmk
    redo = opts.env_flag('redo', False, env_names) and not commit
84 2977 aaronmk
        # never redo in commit mode (run `make schemas/reinstall` instead)
85 1570 aaronmk
86
    # Ranges
87 1946 aaronmk
    start = util.cast(int, opts.get_env_var('start', 1, env_names)) # 1-based
88
    # Make start interally 0-based.
89
    # It's 1-based to the user to match up with the staging table row #s.
90
    start -= 1
91 1945 aaronmk
    if test: n_default = 1
92
    else: n_default = None
93
    n = util.cast(int, util.none_if(opts.get_env_var('n', n_default, env_names),
94
        u''))
95
    end = n
96 1570 aaronmk
    if end != None: end += start
97
98
    # Debugging
99 3132 aaronmk
    verbosity = util.cast(float, opts.get_env_var('verbosity', None, env_names))
100 944 aaronmk
    opts.get_env_var('profile_to', None, env_names) # add to env_names
101 131 aaronmk
102 1570 aaronmk
    # DB
103
    def get_db_config(prefix):
104 1926 aaronmk
        return opts.get_env_vars(sql.db_config_names, prefix, env_names)
105 1570 aaronmk
    in_db_config = get_db_config('in')
106
    out_db_config = get_db_config('out')
107
    in_is_db = 'engine' in in_db_config
108
    out_is_db = 'engine' in out_db_config
109 1982 aaronmk
    in_schema = opts.get_env_var('in_schema', None, env_names)
110
    in_table = opts.get_env_var('in_table', None, env_names)
111 3339 aaronmk
    if in_schema != None:
112
        for config in [in_db_config, out_db_config]:
113
            config['schemas'] += ','+in_schema
114 1570 aaronmk
115 1989 aaronmk
    # Optimization
116 2050 aaronmk
    cache_sql = opts.env_flag('cache_sql', True, env_names)
117 1989 aaronmk
    by_col = in_db_config == out_db_config and opts.env_flag('by_col', False,
118
        env_names) # by-column optimization only applies if mapping to same DB
119
    if test: cpus_default = 0
120 2044 aaronmk
    else: cpus_default = 0 # or None to use parallel processing by default
121 1989 aaronmk
    cpus = util.cast(int, util.none_if(opts.get_env_var('cpus', cpus_default,
122
        env_names), u''))
123
124 3132 aaronmk
    # Set default verbosity. Must happen after by_col is set.
125 4026 aaronmk
    if verbosity == None:
126 3132 aaronmk
        if test: verbosity = 0.5 # automated tests should not be verbose
127 9453 aaronmk
        elif by_col: verbosity = 3 # show all queries to assist debugging
128 3132 aaronmk
        else: verbosity = 1.1 # just show row progress
129
130 9455 aaronmk
    # fix verbosity
131
    if by_col and not test: verbosity = ints.set_min(verbosity, 2)
132
        # live column-based import MUST be run with verbosity 2+ (3 preferred)
133
        # to provide debugging information for often-complex errors.
134
        # without this, debugging is effectively impossible.
135
        # automated tests are exempt from this because they output to the screen
136
137 1570 aaronmk
    ##
138
139 838 aaronmk
    # Logging
140 2457 aaronmk
    verbose_errors = test and verbosity > 0
141 3243 aaronmk
    debug = verbosity >= 1.5
142 2439 aaronmk
    def log(msg, level=1):
143
        '''Higher level -> more verbose'''
144 2452 aaronmk
        if level <= verbosity:
145 2490 aaronmk
            if verbosity <= 2:
146
                if level == 1.5: msg = '# '+msg # msg is Redmine list item
147
                elif msg.startswith('DB query:'): # remove extra debug info
148
                    first_line, nl, msg = msg.partition('\n')
149
            elif level > 1: msg = '['+str(level)+'] '+msg # include level in msg
150
151 2883 aaronmk
            sys.stderr.write(strings.to_raw_str(msg.rstrip('\n')+'\n'))
152 2439 aaronmk
    if debug: log_debug = lambda msg, level=2: log(msg, level)
153 1901 aaronmk
    else: log_debug = sql.log_debug_none
154 662 aaronmk
155 53 aaronmk
    # Parse args
156 510 aaronmk
    map_paths = sys.argv[1:]
157 512 aaronmk
    if map_paths == []:
158
        if in_is_db or not out_is_db: usage_err()
159
        else: map_paths = [None]
160 53 aaronmk
161 646 aaronmk
    def connect_db(db_config):
162 1901 aaronmk
        log('Connecting to '+sql.db_config_str(db_config))
163 2920 aaronmk
        return sql.connect(db_config, caching=cache_sql, autocommit=commit,
164 2916 aaronmk
            debug_temp=verbosity > 3 and commit, log_debug=log_debug)
165 646 aaronmk
166 1945 aaronmk
    if end != None: end_str = str(end-1) # end is one past the last #
167 1573 aaronmk
    else: end_str = 'end'
168 1901 aaronmk
    log('Processing input rows '+str(start)+'-'+end_str)
169 1573 aaronmk
170 1014 aaronmk
    ex_tracker = exc.ExPercentTracker(iter_text='row')
171
    profiler = profiling.ItersProfiler(start_now=True, iter_text='row')
172
173 1856 aaronmk
    # Parallel processing
174 2035 aaronmk
    pool = parallelproc.MultiProducerPool(cpus)
175 1901 aaronmk
    log('Using '+str(pool.process_ct)+' parallel CPUs')
176 1846 aaronmk
177 3661 aaronmk
    # Set up DB access
178
    row_ins_ct_ref = [0]
179
    if out_is_db:
180
        out_db = connect_db(out_db_config)
181 3689 aaronmk
        def is_rel_func(name):
182
            return (name in db_xml.put_special_funcs
183
                or sql.function_exists(out_db, sql_gen.Function(name)))
184 3661 aaronmk
185 1014 aaronmk
    doc = xml_dom.create_doc()
186
    root = doc.documentElement
187 751 aaronmk
    out_is_xml_ref = [False]
188 3653 aaronmk
189 1014 aaronmk
    in_label_ref = [None]
190 3653 aaronmk
    col_defaults = {}
191 1014 aaronmk
    def update_in_label():
192 10114 aaronmk
        if in_schema != None: os.environ['source'] = in_schema
193
        elif in_label_ref[0] != None: os.environ['source'] = in_label_ref[0]
194 3653 aaronmk
195 1014 aaronmk
    def prep_root():
196
        root.clear()
197
        update_in_label()
198
    prep_root()
199 751 aaronmk
200 838 aaronmk
    def process_input(root, row_ready, map_path):
201 512 aaronmk
        '''Inputs datasource to XML tree, mapping if needed'''
202
        # Load map header
203
        in_is_xpaths = True
204 751 aaronmk
        out_is_xpaths = True
205 512 aaronmk
        out_label = None
206
        if map_path != None:
207
            metadata = []
208
            mappings = []
209
            stream = open(map_path, 'rb')
210
            reader = csv.reader(stream)
211
            in_label, out_label = reader.next()[:2]
212 1402 aaronmk
213 512 aaronmk
            def split_col_name(name):
214 1402 aaronmk
                label, sep, root = name.partition(':')
215 4652 aaronmk
                return label, sep != '', root, []
216 1402 aaronmk
217 1705 aaronmk
            in_label, in_root, prefixes = maps.col_info(in_label)
218
            in_is_xpaths = in_root != None
219 1014 aaronmk
            in_label_ref[0] = in_label
220
            update_in_label()
221 1705 aaronmk
            out_label, out_root = maps.col_info(out_label)[:2]
222
            out_is_xpaths = out_root != None
223 1841 aaronmk
            if out_is_xpaths: has_types = out_root.find('/*s/') >= 0
224 1705 aaronmk
                # outer elements are types
225 1402 aaronmk
226 512 aaronmk
            for row in reader:
227
                in_, out = row[:2]
228 2029 aaronmk
                if out != '': mappings.append([in_, out_root+out])
229 1402 aaronmk
230 512 aaronmk
            stream.close()
231
232
            root.ownerDocument.documentElement.tagName = out_label
233
        in_is_xml = in_is_xpaths and not in_is_db
234 751 aaronmk
        out_is_xml_ref[0] = out_is_xpaths and not out_is_db
235 56 aaronmk
236 1897 aaronmk
        def process_rows(process_row, rows, rows_start=0):
237 4026 aaronmk
            '''Processes input rows
238 838 aaronmk
            @param process_row(in_row, i)
239 1945 aaronmk
            @rows_start The (0-based) row # of the first row in rows. Set this
240
                only if the pre-start rows have already been skipped.
241 297 aaronmk
            '''
242 1897 aaronmk
            rows = iter(rows)
243
244
            if end != None: row_nums = xrange(rows_start, end)
245
            else: row_nums = itertools.count(rows_start)
246 2038 aaronmk
            i = -1
247 1897 aaronmk
            for i in row_nums:
248 1718 aaronmk
                try: row = rows.next()
249 2038 aaronmk
                except StopIteration:
250
                    i -= 1 # last row # didn't count
251
                    break # no more rows
252 1718 aaronmk
                if i < start: continue # not at start row yet
253
254 2881 aaronmk
                # Row # is interally 0-based, but 1-based to the user
255
                log('Processing input row #'+str(i+1), level=1.1)
256 838 aaronmk
                process_row(row, i)
257
                row_ready(i, row)
258 2033 aaronmk
            row_ct = i-start+1
259 982 aaronmk
            return row_ct
260 838 aaronmk
261 1898 aaronmk
        def map_rows(get_value, rows, **kw_args):
262 838 aaronmk
            '''Maps input rows
263
            @param get_value(in_, row):str
264
            '''
265 2030 aaronmk
            # Prevent collisions if multiple inputs mapping to same output
266
            outputs_idxs = dict()
267
            for i, mapping in enumerate(mappings):
268
                in_, out = mapping
269
                default = util.NamedTuple(count=1, first=i)
270
                idxs = outputs_idxs.setdefault(out, default)
271
                if idxs is not default: # key existed, so there was a collision
272 4048 aaronmk
                    if idxs.count == 1: # first key does not yet have suffix
273 4047 aaronmk
                        mappings[idxs.first][1] += collision_suffix+'0'
274
                    mappings[i][1] += collision_suffix+str(idxs.count)
275 2030 aaronmk
                    idxs.count += 1
276
277 2026 aaronmk
            id_node = None
278
            if out_is_db:
279 5927 aaronmk
                mappings_orig = mappings[:] # save a copy
280
                mappings[:] = [] # empty existing elements
281
                for in_, out in mappings_orig:
282
                    in_str = strings.ustr(in_)
283
                    is_metadata_ = is_metadata(in_str)
284
                    if is_metadata_: value = metadata_value(in_str)
285
                    else: value = '$'+in_str # mark as name
286
287 2026 aaronmk
                    # All put_obj()s should return the same id_node
288
                    nodes, id_node = xpath.put_obj(root, out, '-1', has_types,
289 5927 aaronmk
                        value) # value is placeholder that documents name
290
                    if not is_metadata_: mappings.append([in_, nodes])
291 3580 aaronmk
                if id_node == None:
292 8075 aaronmk
                    warnings.warn(UserWarning('Map warning: No mappings or no '
293
                        'column name matches. Are you importing the correct '
294
                        'input table?'))
295 4042 aaronmk
                xml_func.simplify(root)
296 4491 aaronmk
                sys.stdout.write(strings.to_raw_str('Put template:\n'
297
                    +strings.ustr(root)))
298 3669 aaronmk
                sys.stdout.flush()
299 2026 aaronmk
300 838 aaronmk
            def process_row(row, i):
301 316 aaronmk
                row_id = str(i)
302 2032 aaronmk
                if id_node != None: xml_dom.set_value(id_node, row_id)
303 316 aaronmk
                for in_, out in mappings:
304 4491 aaronmk
                    log_debug('Getting '+strings.ustr(in_))
305 5927 aaronmk
                    value = cleanup(get_value(in_, row))
306 4492 aaronmk
                    log_debug('Putting '+strings.urepr(value)+' to '
307
                        +strings.ustr(out))
308 2032 aaronmk
                    if out_is_db: # out is list of XML nodes
309
                        for node in out: xml_dom.set_value(node, value)
310
                    elif value != None: # out is XPath
311 1360 aaronmk
                        xpath.put_obj(root, out, row_id, has_types, value)
312 1898 aaronmk
            return process_rows(process_row, rows, **kw_args)
313 297 aaronmk
314 1898 aaronmk
        def map_table(col_names, rows, **kw_args):
315 1416 aaronmk
            col_names_ct = len(col_names)
316 1403 aaronmk
            col_idxs = util.list_flip(col_names)
317 6740 aaronmk
            col_names_map = dict(zip(col_names, col_names))
318 4503 aaronmk
            prefixes_simp = map(maps.simplify, prefixes)
319 1403 aaronmk
320 2029 aaronmk
            # Resolve prefixes
321 2025 aaronmk
            mappings_orig = mappings[:] # save a copy
322
            mappings[:] = [] # empty existing elements
323
            for in_, out in mappings_orig:
324 7148 aaronmk
                if is_metadata(in_): mappings.append([in_, out])
325 5928 aaronmk
                else:
326 4503 aaronmk
                    try:
327 4505 aaronmk
                        cols = get_with_prefix(col_names_map, prefixes_simp,
328 6740 aaronmk
                            in_)
329 2025 aaronmk
                    except KeyError: pass
330 4503 aaronmk
                    else:
331 10115 aaronmk
                        mappings[len(mappings):] = [[db_xml.ColRef(
332
                            orig, col_idxs[orig]), out] for simp, orig in cols]
333
                            # can't use += because that uses =
334 1403 aaronmk
335 2040 aaronmk
            def get_value(in_, row): return row.list[in_.idx]
336 1416 aaronmk
            def wrap_row(row):
337
                return util.ListDict(util.list_as_length(row, col_names_ct),
338
                    col_names, col_idxs) # handle CSV rows of different lengths
339 1403 aaronmk
340 1898 aaronmk
            return map_rows(get_value, util.WrapIter(wrap_row, rows), **kw_args)
341 1403 aaronmk
342 1700 aaronmk
        if in_is_db:
343 2809 aaronmk
            def on_error(e): ex_tracker.track(e)
344
345 3186 aaronmk
            if by_col: in_db = out_db
346
            else: in_db = connect_db(in_db_config)
347 126 aaronmk
348 1982 aaronmk
            # Get table and schema name
349
            schema = in_schema # modified, so can't have same name as outer var
350
            table = in_table # modified, so can't have same name as outer var
351
            if table == None:
352
                assert in_is_xpaths
353
                schema, sep, table = in_root.partition('.')
354
                if sep == '': # only the table name was specified
355
                    table = schema
356
                    schema = None
357 2313 aaronmk
            table = sql_gen.Table(table, schema)
358 1982 aaronmk
359 1991 aaronmk
            # Fetch rows
360
            if by_col: limit = 0 # only fetch column names
361
            else: limit = n
362 6385 aaronmk
            try:
363
                cur = sql.select(in_db, table, limit=limit, start=start,
364
                    recover=True, cacheable=False)
365
            except sql.DoesNotExistException:
366 6445 aaronmk
                table = None
367 6385 aaronmk
                col_names = []
368
                rows = []
369
            else:
370
                col_names = list(sql.col_names(cur))
371
                rows = sql.rows(cur)
372 1991 aaronmk
373 10140 aaronmk
            # inline metadata value columns
374
            col_default_values = {}
375
            for col_name in col_names:
376
                col = sql_gen.Col(col_name, table)
377
                if sql.col_is_constant(in_db, col):
378
                    col_default_values[col_name] = (metadata_prefix +
379
                        sql.col_default_value(in_db, col))
380
            for i, mapping in enumerate(mappings):
381
                in_, out = mapping
382
                mappings[i] = (col_default_values.get(in_, in_), out)
383
384 1989 aaronmk
            if by_col:
385 2042 aaronmk
                map_table(col_names, []) # just create the template
386 2550 aaronmk
387 6454 aaronmk
                if table != None and start == 0 and n == None: # full re-import
388 2734 aaronmk
                    log('Clearing errors table')
389 4474 aaronmk
                    errors_table_ = sql_io.errors_table(in_db, table)
390
                    if errors_table_ != None:
391
                        sql.drop_table(in_db, errors_table_)
392 2734 aaronmk
393 2550 aaronmk
                # Strip XML functions not in the DB
394 3427 aaronmk
                xml_func.process(root, is_rel_func=is_rel_func)
395 4491 aaronmk
                if debug: log_debug('Putting stripped:\n'+strings.ustr(root))
396 2119 aaronmk
                    # only calc if debug
397 2550 aaronmk
398
                # Import rows
399 2422 aaronmk
                in_row_ct_ref = [0]
400 2928 aaronmk
                db_xml.put_table(in_db, root.firstChild, table, in_row_ct_ref,
401 3627 aaronmk
                    row_ins_ct_ref, n, start, on_error, col_defaults)
402 2422 aaronmk
                row_ct = in_row_ct_ref[0]
403 1984 aaronmk
            else:
404
                # Use normal by-row method
405 6385 aaronmk
                row_ct = map_table(col_names, rows, rows_start=start)
406 1991 aaronmk
                    # rows_start: pre-start rows have been skipped
407 3186 aaronmk
408
                in_db.db.close()
409 161 aaronmk
        elif in_is_xml:
410 2809 aaronmk
            stdin = streams.LineCountStream(sys.stdin)
411
            def on_error(e):
412
                exc.add_msg(e, term.emph('input line #:')+' '
413
                    +str(stdin.line_num))
414
                ex_tracker.track(e)
415
416 1715 aaronmk
            def get_rows(doc2rows):
417 1758 aaronmk
                return iters.flatten(itertools.imap(doc2rows,
418
                    xml_parse.docs_iter(stdin, on_error)))
419 1715 aaronmk
420 1714 aaronmk
            if map_path == None:
421 1715 aaronmk
                def doc2rows(in_xml_root):
422 1701 aaronmk
                    iter_ = xml_dom.NodeElemIter(in_xml_root)
423
                    util.skip(iter_, xml_dom.is_text) # skip metadata
424 1715 aaronmk
                    return iter_
425
426
                row_ct = process_rows(lambda row, i: root.appendChild(row),
427
                    get_rows(doc2rows))
428 1714 aaronmk
            else:
429 1715 aaronmk
                def doc2rows(in_xml_root):
430 1701 aaronmk
                    rows = xpath.get(in_xml_root, in_root, limit=end)
431 3581 aaronmk
                    if rows == []: warnings.warn(UserWarning('Map warning: '
432
                        'Root "'+in_root+'" not found in input'))
433 1714 aaronmk
                    return rows
434
435
                def get_value(in_, row):
436
                    in_ = './{'+(','.join(strings.with_prefixes(
437
                        ['']+prefixes, in_)))+'}' # also with no prefix
438
                    nodes = xpath.get(row, in_, allow_rooted=False)
439
                    if nodes != []: return xml_dom.value(nodes[0])
440
                    else: return None
441
442 1715 aaronmk
                row_ct = map_rows(get_value, get_rows(doc2rows))
443 56 aaronmk
        else: # input is CSV
444 1389 aaronmk
            reader, col_names = csvs.reader_and_header(sys.stdin)
445 1403 aaronmk
            row_ct = map_table(col_names, reader)
446 982 aaronmk
447
        return row_ct
448 53 aaronmk
449 838 aaronmk
    def process_inputs(root, row_ready):
450 982 aaronmk
        row_ct = 0
451
        for map_path in map_paths:
452
            row_ct += process_input(root, row_ready, map_path)
453
        return row_ct
454 512 aaronmk
455 1886 aaronmk
    pool.share_vars(locals())
456 130 aaronmk
    if out_is_db:
457 53 aaronmk
        try:
458 947 aaronmk
            if redo: sql.empty_db(out_db)
459 1886 aaronmk
            pool.share_vars(locals())
460 449 aaronmk
461 838 aaronmk
            def row_ready(row_num, input_row):
462 2119 aaronmk
                row_str_ = [None]
463
                def row_str():
464
                    if row_str_[0] == None:
465
                        # Row # is interally 0-based, but 1-based to the user
466
                        row_str_[0] = (term.emph('row #:')+' '+str(row_num+1)
467 4491 aaronmk
                            +'\n'+term.emph('input row:')+'\n'
468
                            +strings.ustr(input_row))
469 2119 aaronmk
                        if verbose_errors: row_str_[0] += ('\n'
470 4491 aaronmk
                            +term.emph('output row:')+'\n'+strings.ustr(root))
471 2119 aaronmk
                    return row_str_[0]
472
473
                if debug: log_debug(row_str()) # only calc if debug
474
475 452 aaronmk
                def on_error(e):
476 2119 aaronmk
                    exc.add_msg(e, row_str())
477 2046 aaronmk
                    ex_tracker.track(e, row_num, detail=verbose_errors)
478 1886 aaronmk
                pool.share_vars(locals())
479 452 aaronmk
480 2032 aaronmk
                row_root = root.cloneNode(True) # deep copy so don't modify root
481 3689 aaronmk
                xml_func.process(row_root, on_error, is_rel_func, out_db)
482 4491 aaronmk
                if debug: log_debug('Putting processed:\n'
483
                    +strings.ustr(row_root)) # only calc if debug
484 2032 aaronmk
                if not xml_dom.is_empty(row_root):
485
                    assert xml_dom.has_one_child(row_root)
486 442 aaronmk
                    try:
487 982 aaronmk
                        sql.with_savepoint(out_db,
488 2032 aaronmk
                            lambda: db_xml.put(out_db, row_root.firstChild,
489 3653 aaronmk
                                row_ins_ct_ref, on_error, col_defaults))
490 449 aaronmk
                    except sql.DatabaseErrors, e: on_error(e)
491
492 982 aaronmk
            row_ct = process_inputs(root, row_ready)
493
            sys.stdout.write('Inserted '+str(row_ins_ct_ref[0])+
494 460 aaronmk
                ' new rows into database\n')
495 3669 aaronmk
            sys.stdout.flush()
496 1868 aaronmk
497
            # Consume asynchronous tasks
498
            pool.main_loop()
499 3117 aaronmk
        finally: out_db.close()
500 751 aaronmk
    else:
501 759 aaronmk
        def on_error(e): ex_tracker.track(e)
502 838 aaronmk
        def row_ready(row_num, input_row): pass
503 982 aaronmk
        row_ct = process_inputs(root, row_ready)
504 759 aaronmk
        xml_func.process(root, on_error)
505 751 aaronmk
        if out_is_xml_ref[0]:
506
            doc.writexml(sys.stdout, **xml_dom.prettyxml_config)
507
        else: # output is CSV
508
            raise NotImplementedError('CSV output not supported yet')
509 985 aaronmk
510 1868 aaronmk
    # Consume any asynchronous tasks not already consumed above
511 1862 aaronmk
    pool.main_loop()
512
513 982 aaronmk
    profiler.stop(row_ct)
514 3324 aaronmk
    if not by_col: ex_tracker.add_iters(row_ct) # only if errors are done by row
515 2439 aaronmk
    log('Processed '+str(row_ct)+' input rows')
516
    log(profiler.msg())
517
    log(ex_tracker.msg())
518 985 aaronmk
    ex_tracker.exit()
519 53 aaronmk
520 847 aaronmk
def main():
521
    try: main_()
522 4491 aaronmk
    except Parser.SyntaxError, e: raise SystemExit(strings.ustr(e))
523 847 aaronmk
524 846 aaronmk
if __name__ == '__main__':
525 847 aaronmk
    profile_to = opts.get_env_var('profile_to', None)
526
    if profile_to != None:
527
        import cProfile
528 1584 aaronmk
        sys.stderr.write('Profiling to '+profile_to+'\n')
529 847 aaronmk
        cProfile.run(main.func_code, profile_to)
530
    else: main()